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Port details
py-ruffus Lightweight library for computational pipelines
2.8.1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Version of this port present on the latest quarterly branch.
Maintainer: kai@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-07-11 16:51:11
Last Update: 2019-07-11 17:50:44
SVN Revision: 506415
Also Listed In: python
License: MIT
The Ruffus module is a lightweight way to add support for running computational
pipelines.

Computational pipelines are often conceptually quite simple, especially if we
breakdown the process into simple stages, or separate tasks.

Each stage or task in a computational pipeline is represented by a Python
function. Each Python function can be called in parallel to run multiple jobs.

Ruffus was originally designed for use in bioinformatics to analyse multiple
genome data sets.

WWW: http://www.ruffus.org.uk
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • py36-ruffus>0:science/py-ruffus

To install the port: cd /usr/ports/science/py-ruffus/ && make install clean
To add the package: pkg install py36-ruffus

PKGNAME: py36-ruffus

Package flavors (<flavor>: <package>)
  • py36: py36-ruffus
  • py27: py27-ruffus

distinfo:

TIMESTAMP = 1558449615
SHA256 (ruffus-2.8.1.tar.gz) = 90bc1e57ffb95be11e9c4461a406fee63395898beacd35a1dce9dd2c468c2582
SIZE (ruffus-2.8.1.tar.gz) = 12182187


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. py36-sqlite3>0 : databases/py-sqlite3@py36
  2. py36-setuptools>0 : devel/py-setuptools@py36
  3. python3.6 : lang/python36
  4. py36-setuptools>0 : devel/py-setuptools@py36
  5. python3.6 : lang/python36
Runtime dependencies:
  1. py36-sqlite3>0 : databases/py-sqlite3@py36
  2. py36-setuptools>0 : devel/py-setuptools@py36
  3. python3.6 : lang/python36

This port is required by:

for Run
Configuration Options
     No options to configure

USES:
python shebangfix

Master Sites:
  1. https://files.pythonhosted.org/packages/source/r/ruffus/
  2. https://pypi.org/packages/source/r/ruffus/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
11 Jul 2019 16:50:44
Original commit files touched by this commit  2.8.1
Revision:506415
kai search for other commits by this committer
New port: science/py-ruffus

The Ruffus module is a lightweight way to add support for running
computational pipelines.

Computational pipelines are often conceptually quite simple, especially if
we breakdown the process into simple stages, or separate tasks.

Each stage or task in a computational pipeline is represented by a Python
function. Each Python function can be called in parallel to run multiple
jobs.

Ruffus was originally designed for use in bioinformatics to analyse multiple
genome data sets.

WWW: http://www.ruffus.org.uk

Number of commits found: 1

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Last updated:
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