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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: www/codeigniter/files/pkg-message-apache.in
SVNWeb
Number of commits found XX: 4
Wed, 14 Aug 2019
[ 12:25 mat ] 508913 www/Stikked/files/pkg-message.in 508913 www/ach/files/pkg-message.in 508913 www/adzap/files/pkg-message.in 508913 www/analog/files/pkg-message.in 508913 www/apache-forrest/files/pkg-message.in 508913 www/apache-mode.el/pkg-message 508913 www/apache24/pkg-message 508913 www/apt-cacher-ng/files/pkg-message.in 508913 www/awstats/files/pkg-message.in 508913 www/bacula-web/files/pkg-message.in (Only the first 10 of 251 ports in this commit are shown above. ) Convert to UCL & cleanup pkg-message (categories w)
Thu, 19 May 2016
[ 11:09 amdmi3 ] 415503 audio/icecast-kh/files/pkg-message.in 415503 audio/icecast2/files/pkg-message.in 415503 audio/lollypop/files/pkg-message.in 415503 audio/mpdas/files/pkg-message.in 415503 audio/nas/files/pkg-message.in 415503 audio/ripit/pkg-message 415503 benchmarks/thrulay/pkg-message 415503 biology/bcftools/files/pkg-message.in 415503 biology/blat/files/pkg-message.in 415503 biology/emboss/files/pkg-message.in (Only the first 10 of 385 ports in this commit are shown above. ) - Fix trailing whitespace in pkg-messages Approved by: portmgr blanket
Tue, 3 May 2011
[ 14:38 glarkin ] 1.16 www/codeigniter/Makefile 1.10 www/codeigniter/distinfo 1.2 www/codeigniter/files/pkg-message-apache.in 1.2 www/codeigniter/files/pkg-message-noapache.in 1.10 www/codeigniter/pkg-plist - Renamed www/codeigniter-devel to www/codeigniter by updating to version 2.0.3 here - Added CONFLICTS for www/codeigniter17 Approved by: appleboy.tw@gmail.com (maintainer)
Wed, 5 Mar 2008
[ 04:16 beech ] 1.5 www/codeigniter/Makefile 1.2 www/codeigniter/distinfo 1.1 www/codeigniter/files/pkg-message-apache.in 1.1 www/codeigniter/files/pkg-message-noapache.in 1.2 www/codeigniter/files/pkg-message.in 1.2 www/codeigniter/pkg-descr 1.2 www/codeigniter/pkg-plist - Update to 1.6.1 - Found all of the CI files that could be modified by the user and install .sample versions of each - Add an informational message when a user-editable config file is modified and the port is deinstalled (e.g. the file is preserved) - Display different pkg-message depending on WITH_APACHE knob PR: ports/121358 Submitted by: Greg Larkin <glarkin@sourcehosting.net> (maintainer)
Number of commits found XX: 4

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