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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: www/gitlab/files/patch-6130
SVNWeb

Number of commits found XX: 2

Fri, 24 Feb 2017
[ 09:45 tz ] Original commit   Revision:434703
434703 www/gitlab/Makefile
434703 www/gitlab/distinfo
434703 www/gitlab/files/patch-6130
434703 www/gitlab/files/patch-Gemfile
434703 www/gitlab/files/patch-config_database.yml.postgresql
434703 www/gitlab/files/patch-config_gitlab.yml.example
434703 www/gitlab/files/patch-config_initializers_1__settings.rb
434703 www/gitlab/files/patch-config_unicorn.rb.example
434703 www/gitlab/files/patch-lib_support_nginx_gitlab
434703 www/gitlab/files/patch-lib_support_nginx_gitlab-ssl

(Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit) 
www/gitlab: Update from 8.11.11 to 8.12.13

Changelog: https://github.com/gitlabhq/gitlabhq/blob/v8.12.13/CHANGELOG
Tue, 31 Jan 2017
[ 16:33 tz ] Original commit   Revision:432936
432936 www/gitlab/Makefile
432936 www/gitlab/files/patch-6130
432936 www/gitlab/files/patch-Gemfile
432936 www/gitlab/files/patch-new-gitlab-git 
www/gitlab: Unbreak GitLab and fix web editing

Switch to rubygem-jquery-ui-rails5-rails4 and
pull in patch for safer ref updates

PR:           215787
Submitted by: swills

Number of commits found XX: 2
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