Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

cufflinks Cufflinks assembles transcripts, estimates their abundance, etc

2.2.1.89 2.2.1.89Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-07-08 10:38:14

License: BSL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• cufflinks>0:biology/cufflinks

mapm3 Constructs linkage maps of markers segregating in experimental crosses

3.0_1 3.0_1Version of this port present on the latest quarterly branch.

Maintainer: tphilipp@potion-studios.com

Port Added: 2020-09-04 11:30:48

License: MAPMAKER

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• mapm3>0:biology/mapm3

paml Phylogenetic Analysis by Maximum Likelihood (PAML)

4.9j 4.9jVersion of this port present on the latest quarterly branch.

Maintainer: jrm@FreeBSD.org

Port Added: 2020-08-20 21:11:49

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• paml>0:biology/paml

py-scikit-bio Data structures, algorithms, educational resources for bioinformatics

0.5.6 0.5.6Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-09-25 01:39:37

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scikit-bio>0:biology/py-scikit-bio@${PY_FLAVOR}