Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

gkl Accelerated kernel library for genomics

0.9.1 0.9.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-08-28 06:03:08

Also Listed In: devel

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• gkl>0:biology/gkl

ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool

2.17.0 2.17.0Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2025-08-26 11:30:06

Also Listed In: perl5 python

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-blast+>0:biology/ncbi-blast+

salmon Transcript-level quantification of RNA-seq from lightweight alignments

1.10.3 1.10.3Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2025-08-26 11:33:08

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• salmon>0:biology/salmon