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Port details
ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
2.10.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. 2.10.0_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2014-12-30 20:03:26
Last Update: 2020-05-16 11:51:33
SVN Revision: 535391
Also Listed In: perl5 python
License: PD
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4296 items)
  1. @ldconfig
  2. /usr/local/share/licenses/ncbi-blast+-2.10.0_1/catalog.mk
  3. /usr/local/share/licenses/ncbi-blast+-2.10.0_1/LICENSE
  4. /usr/local/share/licenses/ncbi-blast+-2.10.0_1/PD
  5. bin/blast_formatter
  6. bin/blast_report
  7. bin/blastdb_aliastool
  8. bin/blastdb_convert
  9. bin/blastdb_path
  10. bin/blastdbcheck
  11. bin/blastdbcmd
  12. bin/blastdbcp
  13. bin/blastn
  14. bin/blastp
  15. bin/blastx
  16. bin/cleanup-blastdb-volumes.py
  17. bin/convert2blastmask
  18. bin/datatool
  19. bin/deltablast
  20. bin/dustmasker
  21. bin/gc_cli
  22. bin/gene_info_reader
  23. bin/get_species_taxids.sh
  24. bin/legacy_blast.pl
  25. bin/lmdbxx_sample
  26. bin/makeblastdb
  27. bin/makembindex
  28. bin/makeprofiledb
  29. bin/project_tree_builder
  30. bin/psiblast
  31. bin/rpsblast
  32. bin/rpstblastn
  33. bin/run_with_lock
  34. bin/seedtop
  35. bin/segmasker
  36. bin/seqdb_demo
  37. bin/seqdb_perf
  38. bin/tblastn
  39. bin/tblastx
  40. bin/update_blastdb.pl
  41. bin/windowmasker
  42. bin/windowmasker_2.2.22_adapter.py
  43. include/ncbi-tools++/algo/blast/api/bl2seq.hpp
  44. include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp
  45. include/ncbi-tools++/algo/blast/api/blast_aux.hpp
  46. include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp
  47. include/ncbi-tools++/algo/blast/api/blast_exception.hpp
  48. include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
  49. include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
  50. include/ncbi-tools++/algo/blast/api/blast_options.hpp
  51. include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp
  52. include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
  53. include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
  54. include/ncbi-tools++/algo/blast/api/blast_results.hpp
  55. include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
  56. include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
  57. include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
  58. include/ncbi-tools++/algo/blast/api/blast_types.hpp
  59. include/ncbi-tools++/algo/blast/api/blastp_kmer_options.hpp
  60. include/ncbi-tools++/algo/blast/api/blastx_options.hpp
  61. include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp
  62. include/ncbi-tools++/algo/blast/api/deltablast.hpp
  63. include/ncbi-tools++/algo/blast/api/deltablast_options.hpp
  64. include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp
  65. include/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp
  66. include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp
  67. include/ncbi-tools++/algo/blast/api/local_blast.hpp
  68. include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp
  69. include/ncbi-tools++/algo/blast/api/local_search.hpp
  70. include/ncbi-tools++/algo/blast/api/magicblast.hpp
  71. include/ncbi-tools++/algo/blast/api/magicblast_options.hpp
  72. include/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp
  73. include/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp
  74. include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp
  75. include/ncbi-tools++/algo/blast/api/phiblast_nucl_options.hpp
  76. include/ncbi-tools++/algo/blast/api/phiblast_prot_options.hpp
  77. include/ncbi-tools++/algo/blast/api/prelim_stage.hpp
  78. include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
  79. include/ncbi-tools++/algo/blast/api/psibl2seq.hpp
  80. include/ncbi-tools++/algo/blast/api/psiblast.hpp
  81. include/ncbi-tools++/algo/blast/api/psiblast_iteration.hpp
  82. include/ncbi-tools++/algo/blast/api/psiblast_options.hpp
  83. include/ncbi-tools++/algo/blast/api/pssm_engine.hpp
  84. include/ncbi-tools++/algo/blast/api/pssm_input.hpp
  85. include/ncbi-tools++/algo/blast/api/query_data.hpp
  86. include/ncbi-tools++/algo/blast/api/remote_blast.hpp
  87. include/ncbi-tools++/algo/blast/api/remote_search.hpp
  88. include/ncbi-tools++/algo/blast/api/repeats_filter.hpp
  89. include/ncbi-tools++/algo/blast/api/rps_aux.hpp
  90. include/ncbi-tools++/algo/blast/api/rpsblast_local.hpp
  91. include/ncbi-tools++/algo/blast/api/rpstblastn_options.hpp
  92. include/ncbi-tools++/algo/blast/api/search_strategy.hpp
  93. include/ncbi-tools++/algo/blast/api/seedtop.hpp
  94. include/ncbi-tools++/algo/blast/api/seqinfosrc_seqdb.hpp
  95. include/ncbi-tools++/algo/blast/api/seqinfosrc_seqvec.hpp
  96. include/ncbi-tools++/algo/blast/api/seqsrc_multiseq.hpp
  97. include/ncbi-tools++/algo/blast/api/seqsrc_seqdb.hpp
  98. include/ncbi-tools++/algo/blast/api/setup_factory.hpp
  99. include/ncbi-tools++/algo/blast/api/sseqloc.hpp
  100. include/ncbi-tools++/algo/blast/api/subj_ranges_set.hpp
  101. include/ncbi-tools++/algo/blast/api/tblastn_options.hpp
  102. include/ncbi-tools++/algo/blast/api/tblastx_options.hpp
  103. include/ncbi-tools++/algo/blast/api/traceback_stage.hpp
  104. include/ncbi-tools++/algo/blast/api/uniform_search.hpp
  105. include/ncbi-tools++/algo/blast/api/version.hpp
  106. include/ncbi-tools++/algo/blast/api/windowmask_filter.hpp
  107. include/ncbi-tools++/algo/blast/blastinput/blast_args.hpp
  108. include/ncbi-tools++/algo/blast/blastinput/blast_asn1_input.hpp
  109. include/ncbi-tools++/algo/blast/blastinput/blast_fasta_input.hpp
  110. include/ncbi-tools++/algo/blast/blastinput/blast_input.hpp
  111. include/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp
  112. include/ncbi-tools++/algo/blast/blastinput/blast_scope_src.hpp
  113. include/ncbi-tools++/algo/blast/blastinput/blastn_args.hpp
  114. include/ncbi-tools++/algo/blast/blastinput/blastp_args.hpp
  115. include/ncbi-tools++/algo/blast/blastinput/blastx_args.hpp
  116. include/ncbi-tools++/algo/blast/blastinput/cmdline_flags.hpp
  117. include/ncbi-tools++/algo/blast/blastinput/deltablast_args.hpp
  118. include/ncbi-tools++/algo/blast/blastinput/igblastn_args.hpp
  119. include/ncbi-tools++/algo/blast/blastinput/igblastp_args.hpp
  120. include/ncbi-tools++/algo/blast/blastinput/kblastp_args.hpp
  121. include/ncbi-tools++/algo/blast/blastinput/magicblast_args.hpp
  122. include/ncbi-tools++/algo/blast/blastinput/psiblast_args.hpp
  123. include/ncbi-tools++/algo/blast/blastinput/rmblastn_args.hpp
  124. include/ncbi-tools++/algo/blast/blastinput/rpsblast_args.hpp
  125. include/ncbi-tools++/algo/blast/blastinput/rpstblastn_args.hpp
  126. include/ncbi-tools++/algo/blast/blastinput/tblastn_args.hpp
  127. include/ncbi-tools++/algo/blast/blastinput/tblastx_args.hpp
  128. include/ncbi-tools++/algo/blast/composition_adjustment/compo_heap.h
  129. include/ncbi-tools++/algo/blast/composition_adjustment/compo_mode_condition.h
  130. include/ncbi-tools++/algo/blast/composition_adjustment/composition_adjustment.h
  131. include/ncbi-tools++/algo/blast/composition_adjustment/composition_constants.h
  132. include/ncbi-tools++/algo/blast/composition_adjustment/matrix_frequency_data.h
  133. include/ncbi-tools++/algo/blast/composition_adjustment/nlm_linear_algebra.h
  134. include/ncbi-tools++/algo/blast/composition_adjustment/optimize_target_freq.h
  135. include/ncbi-tools++/algo/blast/composition_adjustment/redo_alignment.h
  136. include/ncbi-tools++/algo/blast/composition_adjustment/smith_waterman.h
  137. include/ncbi-tools++/algo/blast/composition_adjustment/unified_pvalues.h
  138. include/ncbi-tools++/algo/blast/core/aa_ungapped.h
  139. include/ncbi-tools++/algo/blast/core/blast_aalookup.h
  140. include/ncbi-tools++/algo/blast/core/blast_aascan.h
  141. include/ncbi-tools++/algo/blast/core/blast_def.h
  142. include/ncbi-tools++/algo/blast/core/blast_diagnostics.h
  143. include/ncbi-tools++/algo/blast/core/blast_encoding.h
  144. include/ncbi-tools++/algo/blast/core/blast_engine.h
  145. include/ncbi-tools++/algo/blast/core/blast_export.h
  146. include/ncbi-tools++/algo/blast/core/blast_extend.h
  147. include/ncbi-tools++/algo/blast/core/blast_filter.h
  148. include/ncbi-tools++/algo/blast/core/blast_gapalign.h
  149. include/ncbi-tools++/algo/blast/core/blast_hits.h
  150. include/ncbi-tools++/algo/blast/core/blast_hspfilter.h
  151. include/ncbi-tools++/algo/blast/core/blast_hspstream.h
  152. include/ncbi-tools++/algo/blast/core/blast_kappa.h
  153. include/ncbi-tools++/algo/blast/core/blast_lookup.h
  154. include/ncbi-tools++/algo/blast/core/blast_message.h
  155. include/ncbi-tools++/algo/blast/core/blast_nalookup.h
  156. include/ncbi-tools++/algo/blast/core/blast_nascan.h
  157. include/ncbi-tools++/algo/blast/core/blast_options.h
  158. include/ncbi-tools++/algo/blast/core/blast_parameters.h
  159. include/ncbi-tools++/algo/blast/core/blast_program.h
  160. include/ncbi-tools++/algo/blast/core/blast_psi.h
  161. include/ncbi-tools++/algo/blast/core/blast_query_info.h
  162. include/ncbi-tools++/algo/blast/core/blast_rps.h
  163. include/ncbi-tools++/algo/blast/core/blast_seg.h
  164. include/ncbi-tools++/algo/blast/core/blast_seqsrc.h
  165. include/ncbi-tools++/algo/blast/core/blast_seqsrc_impl.h
  166. include/ncbi-tools++/algo/blast/core/blast_setup.h
  167. include/ncbi-tools++/algo/blast/core/blast_stat.h
  168. include/ncbi-tools++/algo/blast/core/blast_sw.h
  169. include/ncbi-tools++/algo/blast/core/blast_toolkit.h
  170. include/ncbi-tools++/algo/blast/core/blast_traceback.h
  171. include/ncbi-tools++/algo/blast/core/blast_tune.h
  172. include/ncbi-tools++/algo/blast/core/blast_util.h
  173. include/ncbi-tools++/algo/blast/core/gapinfo.h
  174. include/ncbi-tools++/algo/blast/core/gencode_singleton.h
  175. include/ncbi-tools++/algo/blast/core/greedy_align.h
  176. include/ncbi-tools++/algo/blast/core/hspfilter_besthit.h
  177. include/ncbi-tools++/algo/blast/core/hspfilter_collector.h
  178. include/ncbi-tools++/algo/blast/core/hspfilter_culling.h
  179. include/ncbi-tools++/algo/blast/core/hspfilter_mapper.h
  180. include/ncbi-tools++/algo/blast/core/link_hsps.h
  181. include/ncbi-tools++/algo/blast/core/lookup_util.h
  182. include/ncbi-tools++/algo/blast/core/lookup_wrap.h
  183. include/ncbi-tools++/algo/blast/core/mb_indexed_lookup.h
  184. include/ncbi-tools++/algo/blast/core/na_ungapped.h
  185. include/ncbi-tools++/algo/blast/core/ncbi_math.h
  186. include/ncbi-tools++/algo/blast/core/ncbi_std.h
  187. include/ncbi-tools++/algo/blast/core/pattern.h
  188. include/ncbi-tools++/algo/blast/core/phi_extend.h
  189. include/ncbi-tools++/algo/blast/core/phi_gapalign.h
  190. include/ncbi-tools++/algo/blast/core/phi_lookup.h
  191. include/ncbi-tools++/algo/blast/core/spliced_hits.h
  192. include/ncbi-tools++/algo/blast/core/split_query.h
  193. include/ncbi-tools++/algo/blast/dbindex/dbindex.hpp
  194. include/ncbi-tools++/algo/blast/dbindex/dbindex_sp.hpp
  195. include/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp
  196. include/ncbi-tools++/algo/blast/dbindex/sequence_istream_bdb.hpp
  197. include/ncbi-tools++/algo/blast/dbindex/sequence_istream_fasta.hpp
  198. include/ncbi-tools++/algo/blast/format/blast_async_format.hpp
  199. include/ncbi-tools++/algo/blast/format/blast_format.hpp
  200. include/ncbi-tools++/algo/blast/format/blastfmtutil.hpp
  201. include/ncbi-tools++/algo/blast/format/blastxml2_format.hpp
  202. include/ncbi-tools++/algo/blast/format/blastxml_format.hpp
  203. include/ncbi-tools++/algo/blast/format/build_archive.hpp
  204. include/ncbi-tools++/algo/blast/format/data4xml2format.hpp
  205. include/ncbi-tools++/algo/blast/format/data4xmlformat.hpp
  206. include/ncbi-tools++/algo/blast/format/sam.hpp
  207. include/ncbi-tools++/algo/blast/format/vecscreen_run.hpp
  208. include/ncbi-tools++/algo/blast/igblast/igblast.hpp
  209. include/ncbi-tools++/algo/blast/proteinkmer/blastkmer.hpp
  210. include/ncbi-tools++/algo/blast/proteinkmer/blastkmerindex.hpp
  211. include/ncbi-tools++/algo/blast/proteinkmer/blastkmeroptions.hpp
  212. include/ncbi-tools++/algo/blast/proteinkmer/blastkmerresults.hpp
  213. include/ncbi-tools++/algo/blast/proteinkmer/blastkmerutils.hpp
  214. include/ncbi-tools++/algo/blast/proteinkmer/kblastapi.hpp
  215. include/ncbi-tools++/algo/blast/proteinkmer/mhfile.hpp
  216. include/ncbi-tools++/algo/dustmask/sdust.tex
  217. include/ncbi-tools++/algo/dustmask/symdust.hpp
  218. include/ncbi-tools++/algo/segmask/segmask.hpp
  219. include/ncbi-tools++/algo/winmask/README.API
  220. include/ncbi-tools++/algo/winmask/seq_masker.hpp
  221. include/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp
  222. include/ncbi-tools++/algo/winmask/seq_masker_istat.hpp
  223. include/ncbi-tools++/algo/winmask/seq_masker_istat_ascii.hpp
  224. include/ncbi-tools++/algo/winmask/seq_masker_istat_bin.hpp
  225. include/ncbi-tools++/algo/winmask/seq_masker_istat_factory.hpp
  226. include/ncbi-tools++/algo/winmask/seq_masker_istat_oascii.hpp
  227. include/ncbi-tools++/algo/winmask/seq_masker_istat_obinary.hpp
  228. include/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp
  229. include/ncbi-tools++/algo/winmask/seq_masker_ostat_ascii.hpp
  230. include/ncbi-tools++/algo/winmask/seq_masker_ostat_bin.hpp
  231. include/ncbi-tools++/algo/winmask/seq_masker_ostat_factory.hpp
  232. include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp
  233. include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_ascii.hpp
  234. include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_bin.hpp
  235. include/ncbi-tools++/algo/winmask/seq_masker_score.hpp
  236. include/ncbi-tools++/algo/winmask/seq_masker_score_mean.hpp
  237. include/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp
  238. include/ncbi-tools++/algo/winmask/seq_masker_score_min.hpp
  239. include/ncbi-tools++/algo/winmask/seq_masker_uset_array.hpp
  240. include/ncbi-tools++/algo/winmask/seq_masker_uset_hash.hpp
  241. include/ncbi-tools++/algo/winmask/seq_masker_uset_simple.hpp
  242. include/ncbi-tools++/algo/winmask/seq_masker_util.hpp
  243. include/ncbi-tools++/algo/winmask/seq_masker_version.hpp
  244. include/ncbi-tools++/algo/winmask/seq_masker_window.hpp
  245. include/ncbi-tools++/algo/winmask/seq_masker_window_ambig.hpp
  246. include/ncbi-tools++/algo/winmask/seq_masker_window_pattern.hpp
  247. include/ncbi-tools++/algo/winmask/seq_masker_window_pattern_ambig.hpp
  248. include/ncbi-tools++/algo/winmask/win_mask_config.hpp
  249. include/ncbi-tools++/algo/winmask/win_mask_counts_converter.hpp
  250. include/ncbi-tools++/algo/winmask/win_mask_dup_table.hpp
  251. include/ncbi-tools++/algo/winmask/win_mask_gen_counts.hpp
  252. include/ncbi-tools++/algo/winmask/win_mask_util.hpp
  253. include/ncbi-tools++/cgi/caf.hpp
  254. include/ncbi-tools++/cgi/cgi_exception.hpp
  255. include/ncbi-tools++/cgi/cgi_serial.hpp
  256. include/ncbi-tools++/cgi/cgi_session.hpp
  257. include/ncbi-tools++/cgi/cgi_util.hpp
  258. include/ncbi-tools++/cgi/cgiapp.hpp
  259. include/ncbi-tools++/cgi/cgiapp_cached.hpp
  260. include/ncbi-tools++/cgi/cgictx.hpp
  261. include/ncbi-tools++/cgi/error_codes.hpp
  262. include/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp
  263. include/ncbi-tools++/cgi/ncbicgi.hpp
  264. include/ncbi-tools++/cgi/ncbicgir.hpp
  265. include/ncbi-tools++/cgi/ncbires.hpp
  266. include/ncbi-tools++/cgi/ref_args.hpp
  267. include/ncbi-tools++/cgi/user_agent.hpp
  268. include/ncbi-tools++/common/boost_skew_guard.hpp
  269. include/ncbi-tools++/common/config/ncbiconf_msvc.h
  270. include/ncbi-tools++/common/config/ncbiconf_universal.h
  271. include/ncbi-tools++/common/config/ncbiconf_xcode.h
  272. include/ncbi-tools++/common/header_template.hpp
  273. include/ncbi-tools++/common/metamodules_doxygen.h
  274. include/ncbi-tools++/common/ncbi_build_info.h
  275. include/ncbi-tools++/common/ncbi_build_ver.h
  276. include/ncbi-tools++/common/ncbi_build_ver.h.last
  277. include/ncbi-tools++/common/ncbi_export.h
  278. include/ncbi-tools++/common/ncbi_package_ver.h
  279. include/ncbi-tools++/common/ncbi_pch_impl.hpp
  280. include/ncbi-tools++/common/ncbi_revision.h
  281. include/ncbi-tools++/common/ncbi_skew_guard.h
  282. include/ncbi-tools++/common/ncbi_source_ver.cmake_nodep
  283. include/ncbi-tools++/common/ncbi_source_ver.h
  284. include/ncbi-tools++/common/ncbiconf_impl.h
  285. include/ncbi-tools++/common/test_assert.h
  286. include/ncbi-tools++/common/test_assert_impl.h
  287. include/ncbi-tools++/common/test_data_path.h
  288. include/ncbi-tools++/connect/connect_export.h
  289. include/ncbi-tools++/connect/email_diag_handler.hpp
  290. include/ncbi-tools++/connect/error_codes.hpp
  291. include/ncbi-tools++/connect/impl/server_connection.hpp
  292. include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp
  293. include/ncbi-tools++/connect/ncbi_base64.h
  294. include/ncbi-tools++/connect/ncbi_blowfish.h
  295. include/ncbi-tools++/connect/ncbi_buffer.h
  296. include/ncbi-tools++/connect/ncbi_conn_exception.hpp
  297. include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp
  298. include/ncbi-tools++/connect/ncbi_conn_stream.hpp
  299. include/ncbi-tools++/connect/ncbi_conn_test.hpp
  300. include/ncbi-tools++/connect/ncbi_connection.h
  301. include/ncbi-tools++/connect/ncbi_connector.h
  302. include/ncbi-tools++/connect/ncbi_connutil.h
  303. include/ncbi-tools++/connect/ncbi_core.h
  304. include/ncbi-tools++/connect/ncbi_core_cxx.hpp
  305. include/ncbi-tools++/connect/ncbi_file_connector.h
  306. include/ncbi-tools++/connect/ncbi_ftp_connector.h
  307. include/ncbi-tools++/connect/ncbi_gnutls.h
  308. include/ncbi-tools++/connect/ncbi_heapmgr.h
  309. include/ncbi-tools++/connect/ncbi_host_info.h
  310. include/ncbi-tools++/connect/ncbi_http_connector.h
  311. include/ncbi-tools++/connect/ncbi_http_session.hpp
  312. include/ncbi-tools++/connect/ncbi_iprange.h
  313. include/ncbi-tools++/connect/ncbi_ipv6.h
  314. include/ncbi-tools++/connect/ncbi_lbos.hpp
  315. include/ncbi-tools++/connect/ncbi_localip.h
  316. include/ncbi-tools++/connect/ncbi_mbedtls.h
  317. include/ncbi-tools++/connect/ncbi_memory_connector.h
  318. include/ncbi-tools++/connect/ncbi_misc.hpp
  319. include/ncbi-tools++/connect/ncbi_monkey.hpp
  320. include/ncbi-tools++/connect/ncbi_namedpipe.hpp
  321. include/ncbi-tools++/connect/ncbi_namedpipe_connector.hpp
  322. include/ncbi-tools++/connect/ncbi_pipe.hpp
  323. include/ncbi-tools++/connect/ncbi_pipe_connector.hpp
  324. include/ncbi-tools++/connect/ncbi_sendmail.h
  325. include/ncbi-tools++/connect/ncbi_server_info.h
  326. include/ncbi-tools++/connect/ncbi_service.h
  327. include/ncbi-tools++/connect/ncbi_service.hpp
  328. include/ncbi-tools++/connect/ncbi_service_connector.h
  329. include/ncbi-tools++/connect/ncbi_service_cxx.hpp
  330. include/ncbi-tools++/connect/ncbi_socket.h
  331. include/ncbi-tools++/connect/ncbi_socket.hpp
  332. include/ncbi-tools++/connect/ncbi_socket_connector.h
  333. include/ncbi-tools++/connect/ncbi_socket_unix.h
  334. include/ncbi-tools++/connect/ncbi_socket_unix.hpp
  335. include/ncbi-tools++/connect/ncbi_tls.h
  336. include/ncbi-tools++/connect/ncbi_types.h
  337. include/ncbi-tools++/connect/ncbi_userhost.hpp
  338. include/ncbi-tools++/connect/ncbi_util.h
  339. include/ncbi-tools++/connect/server.hpp
  340. include/ncbi-tools++/connect/server_monitor.hpp
  341. include/ncbi-tools++/connect/services/blob_storage_netcache.hpp
  342. include/ncbi-tools++/connect/services/clparser.hpp
  343. include/ncbi-tools++/connect/services/compound_id.hpp
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  1346. include/ncbi-tools++/objects/genomecoll/NCBI_GencollClient_module.hpp
  1347. include/ncbi-tools++/objects/genomecoll/NCBI_GenomeCollection_module.hpp
  1348. include/ncbi-tools++/objects/genomecoll/cached_assembly.hpp
  1349. include/ncbi-tools++/objects/genomecoll/gencoll_client__.hpp
  1350. include/ncbi-tools++/objects/genomecoll/genome_collection__.hpp
  1351. include/ncbi-tools++/objects/genomecoll/genomic_collections_cli.hpp
  1352. include/ncbi-tools++/objects/genomecoll/genomic_collections_cli_.hpp
  1353. include/ncbi-tools++/objects/homologene/.cvsignore
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  1355. include/ncbi-tools++/objects/homologene/HG_Alignment.hpp
  1356. include/ncbi-tools++/objects/homologene/HG_AlignmentSet.hpp
  1357. include/ncbi-tools++/objects/homologene/HG_AlignmentSet_.hpp
  1358. include/ncbi-tools++/objects/homologene/HG_Alignment_.hpp
  1359. include/ncbi-tools++/objects/homologene/HG_Commentary.hpp
  1360. include/ncbi-tools++/objects/homologene/HG_CommentaryContainer.hpp
  1361. include/ncbi-tools++/objects/homologene/HG_CommentaryContainer_.hpp
  1362. include/ncbi-tools++/objects/homologene/HG_CommentarySet.hpp
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  1364. include/ncbi-tools++/objects/homologene/HG_Commentary_.hpp
  1365. include/ncbi-tools++/objects/homologene/HG_Domain.hpp
  1366. include/ncbi-tools++/objects/homologene/HG_Domain_.hpp
  1367. include/ncbi-tools++/objects/homologene/HG_Entry.hpp
  1368. include/ncbi-tools++/objects/homologene/HG_EntrySet.hpp
  1369. include/ncbi-tools++/objects/homologene/HG_EntrySet_.hpp
  1370. include/ncbi-tools++/objects/homologene/HG_Entry_.hpp
  1371. include/ncbi-tools++/objects/homologene/HG_Gene.hpp
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  1373. include/ncbi-tools++/objects/homologene/HG_Link.hpp
  1374. include/ncbi-tools++/objects/homologene/HG_Link_.hpp
  1375. include/ncbi-tools++/objects/homologene/HG_Node.hpp
  1376. include/ncbi-tools++/objects/homologene/HG_Node_.hpp
  1377. include/ncbi-tools++/objects/homologene/HG_Node_id.hpp
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  1379. include/ncbi-tools++/objects/homologene/HG_Stats.hpp
  1380. include/ncbi-tools++/objects/homologene/HG_Stats_.hpp
  1381. include/ncbi-tools++/objects/homologene/HomoloGene_module.hpp
  1382. include/ncbi-tools++/objects/homologene/homologene__.hpp
  1383. include/ncbi-tools++/objects/id1/.cvsignore
  1384. include/ncbi-tools++/objects/id1/.gitignore
  1385. include/ncbi-tools++/objects/id1/Entry_complexities.hpp
  1386. include/ncbi-tools++/objects/id1/Entry_complexities_.hpp
  1387. include/ncbi-tools++/objects/id1/ID1SeqEntry_info.hpp
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  1389. include/ncbi-tools++/objects/id1/ID1Seq_hist.hpp
  1390. include/ncbi-tools++/objects/id1/ID1Seq_hist_.hpp
  1391. include/ncbi-tools++/objects/id1/ID1blob_info.hpp
  1392. include/ncbi-tools++/objects/id1/ID1blob_info_.hpp
  1393. include/ncbi-tools++/objects/id1/ID1server_back.hpp
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  1397. include/ncbi-tools++/objects/id1/ID1server_maxcomplex.hpp
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  1399. include/ncbi-tools++/objects/id1/ID1server_request.hpp
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  1401. include/ncbi-tools++/objects/id1/NCBI_ID1Access_module.hpp
  1402. include/ncbi-tools++/objects/id1/id1__.hpp
  1403. include/ncbi-tools++/objects/id1/id1_client.hpp
  1404. include/ncbi-tools++/objects/id1/id1_client_.hpp
  1405. include/ncbi-tools++/objects/id2/.cvsignore
  1406. include/ncbi-tools++/objects/id2/.gitignore
  1407. include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk.hpp
  1408. include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk_.hpp
  1409. include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Split_Info.hpp
  1410. include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Split_Info_.hpp
  1411. include/ncbi-tools++/objects/id2/ID2S_Request_Get_Chunks.hpp
  1412. include/ncbi-tools++/objects/id2/ID2S_Request_Get_Chunks_.hpp
  1413. include/ncbi-tools++/objects/id2/ID2_Blob_Id.hpp
  1414. include/ncbi-tools++/objects/id2/ID2_Blob_Id_.hpp
  1415. include/ncbi-tools++/objects/id2/ID2_Blob_Seq_id.hpp
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  1417. include/ncbi-tools++/objects/id2/ID2_Blob_Seq_ids.hpp
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  1419. include/ncbi-tools++/objects/id2/ID2_Blob_State.hpp
  1420. include/ncbi-tools++/objects/id2/ID2_Blob_State_.hpp
  1421. include/ncbi-tools++/objects/id2/ID2_Error.hpp
  1422. include/ncbi-tools++/objects/id2/ID2_Error_.hpp
  1423. include/ncbi-tools++/objects/id2/ID2_Get_Blob_Details.hpp
  1424. include/ncbi-tools++/objects/id2/ID2_Get_Blob_Details_.hpp
  1425. include/ncbi-tools++/objects/id2/ID2_Param.hpp
  1426. include/ncbi-tools++/objects/id2/ID2_Param_.hpp
  1427. include/ncbi-tools++/objects/id2/ID2_Params.hpp
  1428. include/ncbi-tools++/objects/id2/ID2_Params_.hpp
  1429. include/ncbi-tools++/objects/id2/ID2_Reply.hpp
  1430. include/ncbi-tools++/objects/id2/ID2_Reply_.hpp
  1431. include/ncbi-tools++/objects/id2/ID2_Reply_Data.hpp
  1432. include/ncbi-tools++/objects/id2/ID2_Reply_Data_.hpp
  1433. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob.hpp
  1434. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_.hpp
  1435. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Id.hpp
  1436. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Id_.hpp
  1437. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Seq_ids.hpp
  1438. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Seq_ids_.hpp
  1439. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Package.hpp
  1440. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Package_.hpp
  1441. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Seq_id.hpp
  1442. include/ncbi-tools++/objects/id2/ID2_Reply_Get_Seq_id_.hpp
  1443. include/ncbi-tools++/objects/id2/ID2_Reply_ReGet_Blob.hpp
  1444. include/ncbi-tools++/objects/id2/ID2_Reply_ReGet_Blob_.hpp
  1445. include/ncbi-tools++/objects/id2/ID2_Request.hpp
  1446. include/ncbi-tools++/objects/id2/ID2_Request_.hpp
  1447. include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Id.hpp
  1448. include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Id_.hpp
  1449. include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Info.hpp
  1450. include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Info_.hpp
  1451. include/ncbi-tools++/objects/id2/ID2_Request_Get_Packages.hpp
  1452. include/ncbi-tools++/objects/id2/ID2_Request_Get_Packages_.hpp
  1453. include/ncbi-tools++/objects/id2/ID2_Request_Get_Seq_id.hpp
  1454. include/ncbi-tools++/objects/id2/ID2_Request_Get_Seq_id_.hpp
  1455. include/ncbi-tools++/objects/id2/ID2_Request_Packet.hpp
  1456. include/ncbi-tools++/objects/id2/ID2_Request_Packet_.hpp
  1457. include/ncbi-tools++/objects/id2/ID2_Request_ReGet_Blob.hpp
  1458. include/ncbi-tools++/objects/id2/ID2_Request_ReGet_Blob_.hpp
  1459. include/ncbi-tools++/objects/id2/ID2_Seq_id.hpp
  1460. include/ncbi-tools++/objects/id2/ID2_Seq_id_.hpp
  1461. include/ncbi-tools++/objects/id2/NCBI_ID2Access_module.hpp
  1462. include/ncbi-tools++/objects/id2/id2__.hpp
  1463. include/ncbi-tools++/objects/id2/id2_client.hpp
  1464. include/ncbi-tools++/objects/id2/id2_client_.hpp
  1465. include/ncbi-tools++/objects/id2/id2processor.hpp
  1466. include/ncbi-tools++/objects/id2/id2processor_interface.hpp
  1467. include/ncbi-tools++/objects/insdseq/.cvsignore
  1468. include/ncbi-tools++/objects/insdseq/.gitignore
  1469. include/ncbi-tools++/objects/insdseq/INSDAltSeqData.hpp
  1470. include/ncbi-tools++/objects/insdseq/INSDAltSeqData_.hpp
  1471. include/ncbi-tools++/objects/insdseq/INSDAltSeqItem.hpp
  1472. include/ncbi-tools++/objects/insdseq/INSDAltSeqItem_.hpp
  1473. include/ncbi-tools++/objects/insdseq/INSDAuthor.hpp
  1474. include/ncbi-tools++/objects/insdseq/INSDAuthor_.hpp
  1475. include/ncbi-tools++/objects/insdseq/INSDComment.hpp
  1476. include/ncbi-tools++/objects/insdseq/INSDCommentParagraph.hpp
  1477. include/ncbi-tools++/objects/insdseq/INSDCommentParagraph_.hpp
  1478. include/ncbi-tools++/objects/insdseq/INSDComment_.hpp
  1479. include/ncbi-tools++/objects/insdseq/INSDFeature.hpp
  1480. include/ncbi-tools++/objects/insdseq/INSDFeatureSet.hpp
  1481. include/ncbi-tools++/objects/insdseq/INSDFeatureSet_.hpp
  1482. include/ncbi-tools++/objects/insdseq/INSDFeature_.hpp
  1483. include/ncbi-tools++/objects/insdseq/INSDInterval.hpp
  1484. include/ncbi-tools++/objects/insdseq/INSDInterval_.hpp
  1485. include/ncbi-tools++/objects/insdseq/INSDKeyword.hpp
  1486. include/ncbi-tools++/objects/insdseq/INSDKeyword_.hpp
  1487. include/ncbi-tools++/objects/insdseq/INSDQualifier.hpp
  1488. include/ncbi-tools++/objects/insdseq/INSDQualifier_.hpp
  1489. include/ncbi-tools++/objects/insdseq/INSDReference.hpp
  1490. include/ncbi-tools++/objects/insdseq/INSDReference_.hpp
  1491. include/ncbi-tools++/objects/insdseq/INSDSecondary_accn.hpp
  1492. include/ncbi-tools++/objects/insdseq/INSDSecondary_accn_.hpp
  1493. include/ncbi-tools++/objects/insdseq/INSDSeq.hpp
  1494. include/ncbi-tools++/objects/insdseq/INSDSeq_.hpp
  1495. include/ncbi-tools++/objects/insdseq/INSDSeqid.hpp
  1496. include/ncbi-tools++/objects/insdseq/INSDSeqid_.hpp
  1497. include/ncbi-tools++/objects/insdseq/INSDSet.hpp
  1498. include/ncbi-tools++/objects/insdseq/INSDSet_.hpp
  1499. include/ncbi-tools++/objects/insdseq/INSDStrucComment.hpp
  1500. include/ncbi-tools++/objects/insdseq/INSDStrucCommentItem.hpp
  1501. include/ncbi-tools++/objects/insdseq/INSDStrucCommentItem_.hpp
  1502. include/ncbi-tools++/objects/insdseq/INSDStrucComment_.hpp
  1503. include/ncbi-tools++/objects/insdseq/INSDXref.hpp
  1504. include/ncbi-tools++/objects/insdseq/INSDXref_.hpp
  1505. include/ncbi-tools++/objects/insdseq/INSD_INSDSeq_module.hpp
  1506. include/ncbi-tools++/objects/insdseq/insdseq__.hpp
  1507. include/ncbi-tools++/objects/macro/.cvsignore
  1508. include/ncbi-tools++/objects/macro/.gitignore
  1509. include/ncbi-tools++/objects/macro/AECRParse_action.hpp
  1510. include/ncbi-tools++/objects/macro/AECRParse_action_.hpp
  1511. include/ncbi-tools++/objects/macro/AECR_action.hpp
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  1513. include/ncbi-tools++/objects/macro/Action_choice.hpp
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  1515. include/ncbi-tools++/objects/macro/Add_descriptor_list_action.hpp
  1516. include/ncbi-tools++/objects/macro/Add_descriptor_list_action_.hpp
  1517. include/ncbi-tools++/objects/macro/Add_file_action.hpp
  1518. include/ncbi-tools++/objects/macro/Add_file_action_.hpp
  1519. include/ncbi-tools++/objects/macro/Adjus_featu_for_gaps_actio.hpp
  1520. include/ncbi-tools++/objects/macro/Adjus_featu_for_gaps_actio_.hpp
  1521. include/ncbi-tools++/objects/macro/Apply_action.hpp
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  1523. include/ncbi-tools++/objects/macro/Apply_feature_action.hpp
  1524. include/ncbi-tools++/objects/macro/Apply_feature_action_.hpp
  1525. include/ncbi-tools++/objects/macro/Apply_table_action.hpp
  1526. include/ncbi-tools++/objects/macro/Apply_table_action_.hpp
  1527. include/ncbi-tools++/objects/macro/Apply_table_extra_data.hpp
  1528. include/ncbi-tools++/objects/macro/Apply_table_extra_data_.hpp
  1529. include/ncbi-tools++/objects/macro/Author_fix_action.hpp
  1530. include/ncbi-tools++/objects/macro/Author_fix_action_.hpp
  1531. include/ncbi-tools++/objects/macro/Author_fix_type.hpp
  1532. include/ncbi-tools++/objects/macro/Author_fix_type_.hpp
  1533. include/ncbi-tools++/objects/macro/Autod_misc_feat_parse_rule.hpp
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  1535. include/ncbi-tools++/objects/macro/Autodef_action.hpp
  1536. include/ncbi-tools++/objects/macro/Autodef_action_.hpp
  1537. include/ncbi-tools++/objects/macro/Autodef_list_type.hpp
  1538. include/ncbi-tools++/objects/macro/Autodef_list_type_.hpp
  1539. include/ncbi-tools++/objects/macro/Autofix_action.hpp
  1540. include/ncbi-tools++/objects/macro/Autofix_action_.hpp
  1541. include/ncbi-tools++/objects/macro/Bond_type.hpp
  1542. include/ncbi-tools++/objects/macro/Bond_type_.hpp
  1543. include/ncbi-tools++/objects/macro/CDSGen_featur_type_constra.hpp
  1544. include/ncbi-tools++/objects/macro/CDSGen_featur_type_constra_.hpp
  1545. include/ncbi-tools++/objects/macro/CDSGenePr_constraint_field.hpp
  1546. include/ncbi-tools++/objects/macro/CDSGenePr_constraint_field_.hpp
  1547. include/ncbi-tools++/objects/macro/CDSGenePr_pseudo_constrain.hpp
  1548. include/ncbi-tools++/objects/macro/CDSGenePr_pseudo_constrain_.hpp
  1549. include/ncbi-tools++/objects/macro/CDSGenePro_qual_constraint.hpp
  1550. include/ncbi-tools++/objects/macro/CDSGenePro_qual_constraint_.hpp
  1551. include/ncbi-tools++/objects/macro/CDSGeneProt_field.hpp
  1552. include/ncbi-tools++/objects/macro/CDSGeneProt_field_.hpp
  1553. include/ncbi-tools++/objects/macro/CDSGeneProt_field_pair.hpp
  1554. include/ncbi-tools++/objects/macro/CDSGeneProt_field_pair_.hpp
  1555. include/ncbi-tools++/objects/macro/Cap_change.hpp
  1556. include/ncbi-tools++/objects/macro/Cap_change_.hpp
  1557. include/ncbi-tools++/objects/macro/Completedness_type.hpp
  1558. include/ncbi-tools++/objects/macro/Completedness_type_.hpp
  1559. include/ncbi-tools++/objects/macro/Constraint_choice.hpp
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  1561. include/ncbi-tools++/objects/macro/Constraint_choice_set.hpp
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  1563. include/ncbi-tools++/objects/macro/Conver_feature_dst_options.hpp
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  1565. include/ncbi-tools++/objects/macro/Conver_feature_src_options.hpp
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  1567. include/ncbi-tools++/objects/macro/Convert_action.hpp
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  1569. include/ncbi-tools++/objects/macro/Convert_feature_action.hpp
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  1571. include/ncbi-tools++/objects/macro/Convert_from_CDS_options.hpp
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  1573. include/ncbi-tools++/objects/macro/Convert_location_type.hpp
  1574. include/ncbi-tools++/objects/macro/Convert_location_type_.hpp
  1575. include/ncbi-tools++/objects/macro/Copy_action.hpp
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  1577. include/ncbi-tools++/objects/macro/Create_TSA_ids_action.hpp
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  1579. include/ncbi-tools++/objects/macro/Create_TSA_ids_src.hpp
  1580. include/ncbi-tools++/objects/macro/Create_TSA_ids_src_.hpp
  1581. include/ncbi-tools++/objects/macro/DBLink_field_pair.hpp
  1582. include/ncbi-tools++/objects/macro/DBLink_field_pair_.hpp
  1583. include/ncbi-tools++/objects/macro/DBLink_field_type.hpp
  1584. include/ncbi-tools++/objects/macro/DBLink_field_type_.hpp
  1585. include/ncbi-tools++/objects/macro/Descriptor_type.hpp
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  1587. include/ncbi-tools++/objects/macro/Edit_action.hpp
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  1589. include/ncbi-tools++/objects/macro/Edit_featur_locatio_action.hpp
  1590. include/ncbi-tools++/objects/macro/Edit_featur_locatio_action_.hpp
  1591. include/ncbi-tools++/objects/macro/Edit_location_strand.hpp
  1592. include/ncbi-tools++/objects/macro/Edit_location_strand_.hpp
  1593. include/ncbi-tools++/objects/macro/ExistingTextOption.hpp
  1594. include/ncbi-tools++/objects/macro/ExistingTextOption_.hpp
  1595. include/ncbi-tools++/objects/macro/Extend_to_feature.hpp
  1596. include/ncbi-tools++/objects/macro/Extend_to_feature_.hpp
  1597. include/ncbi-tools++/objects/macro/Feat_qual_choice.hpp
  1598. include/ncbi-tools++/objects/macro/Feat_qual_choice_.hpp
  1599. include/ncbi-tools++/objects/macro/Feat_qual_legal.hpp
  1600. include/ncbi-tools++/objects/macro/Feat_qual_legal_.hpp
  1601. include/ncbi-tools++/objects/macro/Feat_qual_legal_set.hpp
  1602. include/ncbi-tools++/objects/macro/Feat_qual_legal_set_.hpp
  1603. include/ncbi-tools++/objects/macro/Feat_qual_legal_val.hpp
  1604. include/ncbi-tools++/objects/macro/Feat_qual_legal_val_.hpp
  1605. include/ncbi-tools++/objects/macro/Feat_qual_legal_val_choice.hpp
  1606. include/ncbi-tools++/objects/macro/Feat_qual_legal_val_choice_.hpp
  1607. include/ncbi-tools++/objects/macro/Featur_locatio_strand_from.hpp
  1608. include/ncbi-tools++/objects/macro/Featur_locatio_strand_from_.hpp
  1609. include/ncbi-tools++/objects/macro/Feature_field.hpp
  1610. include/ncbi-tools++/objects/macro/Feature_field_.hpp
  1611. include/ncbi-tools++/objects/macro/Feature_field_legal.hpp
  1612. include/ncbi-tools++/objects/macro/Feature_field_legal_.hpp
  1613. include/ncbi-tools++/objects/macro/Feature_field_pair.hpp
  1614. include/ncbi-tools++/objects/macro/Feature_field_pair_.hpp
  1615. include/ncbi-tools++/objects/macro/Feature_location_strand_to.hpp
  1616. include/ncbi-tools++/objects/macro/Feature_location_strand_to_.hpp
  1617. include/ncbi-tools++/objects/macro/Feature_stranded_constrain.hpp
  1618. include/ncbi-tools++/objects/macro/Feature_stranded_constrain_.hpp
  1619. include/ncbi-tools++/objects/macro/Field_constraint.hpp
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  1621. include/ncbi-tools++/objects/macro/Field_edit.hpp
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  1623. include/ncbi-tools++/objects/macro/Field_edit_location.hpp
  1624. include/ncbi-tools++/objects/macro/Field_edit_location_.hpp
  1625. include/ncbi-tools++/objects/macro/Field_pair_type.hpp
  1626. include/ncbi-tools++/objects/macro/Field_pair_type_.hpp
  1627. include/ncbi-tools++/objects/macro/Field_type.hpp
  1628. include/ncbi-tools++/objects/macro/Field_type_.hpp
  1629. include/ncbi-tools++/objects/macro/Fix_author_caps.hpp
  1630. include/ncbi-tools++/objects/macro/Fix_author_caps_.hpp
  1631. include/ncbi-tools++/objects/macro/Fix_caps_action.hpp
  1632. include/ncbi-tools++/objects/macro/Fix_caps_action_.hpp
  1633. include/ncbi-tools++/objects/macro/Fix_format_action.hpp
  1634. include/ncbi-tools++/objects/macro/Fix_format_action_.hpp
  1635. include/ncbi-tools++/objects/macro/Fix_pub_caps_action.hpp
  1636. include/ncbi-tools++/objects/macro/Fix_pub_caps_action_.hpp
  1637. include/ncbi-tools++/objects/macro/Fix_sets_action.hpp
  1638. include/ncbi-tools++/objects/macro/Fix_sets_action_.hpp
  1639. include/ncbi-tools++/objects/macro/Fix_type.hpp
  1640. include/ncbi-tools++/objects/macro/Fix_type_.hpp
  1641. include/ncbi-tools++/objects/macro/Gene_xref_necessary_type.hpp
  1642. include/ncbi-tools++/objects/macro/Gene_xref_necessary_type_.hpp
  1643. include/ncbi-tools++/objects/macro/Gene_xref_suppression_type.hpp
  1644. include/ncbi-tools++/objects/macro/Gene_xref_suppression_type_.hpp
  1645. include/ncbi-tools++/objects/macro/Gene_xref_type.hpp
  1646. include/ncbi-tools++/objects/macro/Gene_xref_type_.hpp
  1647. include/ncbi-tools++/objects/macro/Location_choice.hpp
  1648. include/ncbi-tools++/objects/macro/Location_choice_.hpp
  1649. include/ncbi-tools++/objects/macro/Location_constraint.hpp
  1650. include/ncbi-tools++/objects/macro/Location_constraint_.hpp
  1651. include/ncbi-tools++/objects/macro/Location_edit_type.hpp
  1652. include/ncbi-tools++/objects/macro/Location_edit_type_.hpp
  1653. include/ncbi-tools++/objects/macro/Location_interval.hpp
  1654. include/ncbi-tools++/objects/macro/Location_interval_.hpp
  1655. include/ncbi-tools++/objects/macro/Location_pos_constraint.hpp
  1656. include/ncbi-tools++/objects/macro/Location_pos_constraint_.hpp
  1657. include/ncbi-tools++/objects/macro/Location_type_constraint.hpp
  1658. include/ncbi-tools++/objects/macro/Location_type_constraint_.hpp
  1659. include/ncbi-tools++/objects/macro/Macro_action_choice.hpp
  1660. include/ncbi-tools++/objects/macro/Macro_action_choice_.hpp
  1661. include/ncbi-tools++/objects/macro/Macro_action_list.hpp
  1662. include/ncbi-tools++/objects/macro/Macro_action_list_.hpp
  1663. include/ncbi-tools++/objects/macro/Macro_feature_type.hpp
  1664. include/ncbi-tools++/objects/macro/Macro_feature_type_.hpp
  1665. include/ncbi-tools++/objects/macro/Make_gene_xref_action.hpp
  1666. include/ncbi-tools++/objects/macro/Make_gene_xref_action_.hpp
  1667. include/ncbi-tools++/objects/macro/Match_type_constraint.hpp
  1668. include/ncbi-tools++/objects/macro/Match_type_constraint_.hpp
  1669. include/ncbi-tools++/objects/macro/Misc_field.hpp
  1670. include/ncbi-tools++/objects/macro/Misc_field_.hpp
  1671. include/ncbi-tools++/objects/macro/Molecule_class_type.hpp
  1672. include/ncbi-tools++/objects/macro/Molecule_class_type_.hpp
  1673. include/ncbi-tools++/objects/macro/Molecule_type.hpp
  1674. include/ncbi-tools++/objects/macro/Molecule_type_.hpp
  1675. include/ncbi-tools++/objects/macro/Molinfo_block.hpp
  1676. include/ncbi-tools++/objects/macro/Molinfo_block_.hpp
  1677. include/ncbi-tools++/objects/macro/Molinfo_completedness_pair.hpp
  1678. include/ncbi-tools++/objects/macro/Molinfo_completedness_pair_.hpp
  1679. include/ncbi-tools++/objects/macro/Molinfo_field.hpp
  1680. include/ncbi-tools++/objects/macro/Molinfo_field_.hpp
  1681. include/ncbi-tools++/objects/macro/Molinfo_field_constraint.hpp
  1682. include/ncbi-tools++/objects/macro/Molinfo_field_constraint_.hpp
  1683. include/ncbi-tools++/objects/macro/Molinfo_field_list.hpp
  1684. include/ncbi-tools++/objects/macro/Molinfo_field_list_.hpp
  1685. include/ncbi-tools++/objects/macro/Molinfo_field_pair.hpp
  1686. include/ncbi-tools++/objects/macro/Molinfo_field_pair_.hpp
  1687. include/ncbi-tools++/objects/macro/Molinfo_mol_class_pair.hpp
  1688. include/ncbi-tools++/objects/macro/Molinfo_mol_class_pair_.hpp
  1689. include/ncbi-tools++/objects/macro/Molinfo_molecule_pair.hpp
  1690. include/ncbi-tools++/objects/macro/Molinfo_molecule_pair_.hpp
  1691. include/ncbi-tools++/objects/macro/Molinfo_strand_pair.hpp
  1692. include/ncbi-tools++/objects/macro/Molinfo_strand_pair_.hpp
  1693. include/ncbi-tools++/objects/macro/Molinfo_technique_pair.hpp
  1694. include/ncbi-tools++/objects/macro/Molinfo_technique_pair_.hpp
  1695. include/ncbi-tools++/objects/macro/Molinfo_topology_pair.hpp
  1696. include/ncbi-tools++/objects/macro/Molinfo_topology_pair_.hpp
  1697. include/ncbi-tools++/objects/macro/NCBI_Macro_module.hpp
  1698. include/ncbi-tools++/objects/macro/Object_type_constraint.hpp
  1699. include/ncbi-tools++/objects/macro/Object_type_constraint_.hpp
  1700. include/ncbi-tools++/objects/macro/Parse_action.hpp
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  1704. include/ncbi-tools++/objects/macro/Parse_dst_org.hpp
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  1706. include/ncbi-tools++/objects/macro/Parse_src.hpp
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  1708. include/ncbi-tools++/objects/macro/Parse_src_general_id.hpp
  1709. include/ncbi-tools++/objects/macro/Parse_src_general_id_.hpp
  1710. include/ncbi-tools++/objects/macro/Parse_src_org.hpp
  1711. include/ncbi-tools++/objects/macro/Parse_src_org_.hpp
  1712. include/ncbi-tools++/objects/macro/Parse_src_org_choice.hpp
  1713. include/ncbi-tools++/objects/macro/Parse_src_org_choice_.hpp
  1714. include/ncbi-tools++/objects/macro/Partial_3_clear_constraint.hpp
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  1716. include/ncbi-tools++/objects/macro/Partial_3_set_action.hpp
  1717. include/ncbi-tools++/objects/macro/Partial_3_set_action_.hpp
  1718. include/ncbi-tools++/objects/macro/Partial_3_set_constraint.hpp
  1719. include/ncbi-tools++/objects/macro/Partial_3_set_constraint_.hpp
  1720. include/ncbi-tools++/objects/macro/Partial_5_clear_constraint.hpp
  1721. include/ncbi-tools++/objects/macro/Partial_5_clear_constraint_.hpp
  1722. include/ncbi-tools++/objects/macro/Partial_5_set_action.hpp
  1723. include/ncbi-tools++/objects/macro/Partial_5_set_action_.hpp
  1724. include/ncbi-tools++/objects/macro/Partial_5_set_constraint.hpp
  1725. include/ncbi-tools++/objects/macro/Partial_5_set_constraint_.hpp
  1726. include/ncbi-tools++/objects/macro/Partial_both_clear_constra.hpp
  1727. include/ncbi-tools++/objects/macro/Partial_both_clear_constra_.hpp
  1728. include/ncbi-tools++/objects/macro/Partial_both_set_action.hpp
  1729. include/ncbi-tools++/objects/macro/Partial_both_set_action_.hpp
  1730. include/ncbi-tools++/objects/macro/Partial_both_set_constrain.hpp
  1731. include/ncbi-tools++/objects/macro/Partial_both_set_constrain_.hpp
  1732. include/ncbi-tools++/objects/macro/Partial_constraint.hpp
  1733. include/ncbi-tools++/objects/macro/Partial_constraint_.hpp
  1734. include/ncbi-tools++/objects/macro/Pub_field_constraint.hpp
  1735. include/ncbi-tools++/objects/macro/Pub_field_constraint_.hpp
  1736. include/ncbi-tools++/objects/macro/Pub_field_speci_const_type.hpp
  1737. include/ncbi-tools++/objects/macro/Pub_field_speci_const_type_.hpp
  1738. include/ncbi-tools++/objects/macro/Pub_field_special_constrai.hpp
  1739. include/ncbi-tools++/objects/macro/Pub_field_special_constrai_.hpp
  1740. include/ncbi-tools++/objects/macro/Pub_type.hpp
  1741. include/ncbi-tools++/objects/macro/Pub_type_.hpp
  1742. include/ncbi-tools++/objects/macro/Publication_constraint.hpp
  1743. include/ncbi-tools++/objects/macro/Publication_constraint_.hpp
  1744. include/ncbi-tools++/objects/macro/Publication_field.hpp
  1745. include/ncbi-tools++/objects/macro/Publication_field_.hpp
  1746. include/ncbi-tools++/objects/macro/Quantity_constraint.hpp
  1747. include/ncbi-tools++/objects/macro/Quantity_constraint_.hpp
  1748. include/ncbi-tools++/objects/macro/Region_type.hpp
  1749. include/ncbi-tools++/objects/macro/Region_type_.hpp
  1750. include/ncbi-tools++/objects/macro/Remov_duplic_featur_action.hpp
  1751. include/ncbi-tools++/objects/macro/Remov_duplic_featur_action_.hpp
  1752. include/ncbi-tools++/objects/macro/Remove_action.hpp
  1753. include/ncbi-tools++/objects/macro/Remove_action_.hpp
  1754. include/ncbi-tools++/objects/macro/Remove_descriptor_action.hpp
  1755. include/ncbi-tools++/objects/macro/Remove_descriptor_action_.hpp
  1756. include/ncbi-tools++/objects/macro/Remove_feature_action.hpp
  1757. include/ncbi-tools++/objects/macro/Remove_feature_action_.hpp
  1758. include/ncbi-tools++/objects/macro/Remove_outside_action.hpp
  1759. include/ncbi-tools++/objects/macro/Remove_outside_action_.hpp
  1760. include/ncbi-tools++/objects/macro/Remove_sequences_action.hpp
  1761. include/ncbi-tools++/objects/macro/Remove_sequences_action_.hpp
  1762. include/ncbi-tools++/objects/macro/Remove_xrefs_action.hpp
  1763. include/ncbi-tools++/objects/macro/Remove_xrefs_action_.hpp
  1764. include/ncbi-tools++/objects/macro/Replace_func.hpp
  1765. include/ncbi-tools++/objects/macro/Replace_func_.hpp
  1766. include/ncbi-tools++/objects/macro/Replace_rule.hpp
  1767. include/ncbi-tools++/objects/macro/Replace_rule_.hpp
  1768. include/ncbi-tools++/objects/macro/Retranslate_cds_action.hpp
  1769. include/ncbi-tools++/objects/macro/Retranslate_cds_action_.hpp
  1770. include/ncbi-tools++/objects/macro/Rna_feat_type.hpp
  1771. include/ncbi-tools++/objects/macro/Rna_feat_type_.hpp
  1772. include/ncbi-tools++/objects/macro/Rna_field.hpp
  1773. include/ncbi-tools++/objects/macro/Rna_field_.hpp
  1774. include/ncbi-tools++/objects/macro/Rna_qual.hpp
  1775. include/ncbi-tools++/objects/macro/Rna_qual_.hpp
  1776. include/ncbi-tools++/objects/macro/Rna_qual_pair.hpp
  1777. include/ncbi-tools++/objects/macro/Rna_qual_pair_.hpp
  1778. include/ncbi-tools++/objects/macro/Search_func.hpp
  1779. include/ncbi-tools++/objects/macro/Search_func_.hpp
  1780. include/ncbi-tools++/objects/macro/Seqtype_constraint.hpp
  1781. include/ncbi-tools++/objects/macro/Seqtype_constraint_.hpp
  1782. include/ncbi-tools++/objects/macro/Seque_const_mol_type_const.hpp
  1783. include/ncbi-tools++/objects/macro/Seque_const_mol_type_const_.hpp
  1784. include/ncbi-tools++/objects/macro/Sequence_constraint.hpp
  1785. include/ncbi-tools++/objects/macro/Sequence_constraint_.hpp
  1786. include/ncbi-tools++/objects/macro/Sequence_constraint_rnamol.hpp
  1787. include/ncbi-tools++/objects/macro/Sequence_constraint_rnamol_.hpp
  1788. include/ncbi-tools++/objects/macro/Sequence_list.hpp
  1789. include/ncbi-tools++/objects/macro/Sequence_list_.hpp
  1790. include/ncbi-tools++/objects/macro/Sequence_list_choice.hpp
  1791. include/ncbi-tools++/objects/macro/Sequence_list_choice_.hpp
  1792. include/ncbi-tools++/objects/macro/Simple_replace.hpp
  1793. include/ncbi-tools++/objects/macro/Simple_replace_.hpp
  1794. include/ncbi-tools++/objects/macro/Site_type.hpp
  1795. include/ncbi-tools++/objects/macro/Site_type_.hpp
  1796. include/ncbi-tools++/objects/macro/Sort_fields_action.hpp
  1797. include/ncbi-tools++/objects/macro/Sort_fields_action_.hpp
  1798. include/ncbi-tools++/objects/macro/Sort_order.hpp
  1799. include/ncbi-tools++/objects/macro/Sort_order_.hpp
  1800. include/ncbi-tools++/objects/macro/Source_constraint.hpp
  1801. include/ncbi-tools++/objects/macro/Source_constraint_.hpp
  1802. include/ncbi-tools++/objects/macro/Source_location.hpp
  1803. include/ncbi-tools++/objects/macro/Source_location_.hpp
  1804. include/ncbi-tools++/objects/macro/Source_origin.hpp
  1805. include/ncbi-tools++/objects/macro/Source_origin_.hpp
  1806. include/ncbi-tools++/objects/macro/Source_qual.hpp
  1807. include/ncbi-tools++/objects/macro/Source_qual_.hpp
  1808. include/ncbi-tools++/objects/macro/Source_qual_choice.hpp
  1809. include/ncbi-tools++/objects/macro/Source_qual_choice_.hpp
  1810. include/ncbi-tools++/objects/macro/Source_qual_pair.hpp
  1811. include/ncbi-tools++/objects/macro/Source_qual_pair_.hpp
  1812. include/ncbi-tools++/objects/macro/Source_qual_text_val.hpp
  1813. include/ncbi-tools++/objects/macro/Source_qual_text_val_.hpp
  1814. include/ncbi-tools++/objects/macro/Source_qual_val_choice.hpp
  1815. include/ncbi-tools++/objects/macro/Source_qual_val_choice_.hpp
  1816. include/ncbi-tools++/objects/macro/Source_qual_val_set.hpp
  1817. include/ncbi-tools++/objects/macro/Source_qual_val_set_.hpp
  1818. include/ncbi-tools++/objects/macro/Strand_constraint.hpp
  1819. include/ncbi-tools++/objects/macro/Strand_constraint_.hpp
  1820. include/ncbi-tools++/objects/macro/Strand_type.hpp
  1821. include/ncbi-tools++/objects/macro/Strand_type_.hpp
  1822. include/ncbi-tools++/objects/macro/String_constraint.hpp
  1823. include/ncbi-tools++/objects/macro/String_constraint_.hpp
  1824. include/ncbi-tools++/objects/macro/String_constraint_set.hpp
  1825. include/ncbi-tools++/objects/macro/String_constraint_set_.hpp
  1826. include/ncbi-tools++/objects/macro/String_location.hpp
  1827. include/ncbi-tools++/objects/macro/String_location_.hpp
  1828. include/ncbi-tools++/objects/macro/Structu_comment_field_pair.hpp
  1829. include/ncbi-tools++/objects/macro/Structu_comment_field_pair_.hpp
  1830. include/ncbi-tools++/objects/macro/Structured_comment_field.hpp
  1831. include/ncbi-tools++/objects/macro/Structured_comment_field_.hpp
  1832. include/ncbi-tools++/objects/macro/Suspect_rule.hpp
  1833. include/ncbi-tools++/objects/macro/Suspect_rule_.hpp
  1834. include/ncbi-tools++/objects/macro/Suspect_rule_set.hpp
  1835. include/ncbi-tools++/objects/macro/Suspect_rule_set_.hpp
  1836. include/ncbi-tools++/objects/macro/Swap_action.hpp
  1837. include/ncbi-tools++/objects/macro/Swap_action_.hpp
  1838. include/ncbi-tools++/objects/macro/Table_match.hpp
  1839. include/ncbi-tools++/objects/macro/Table_match_.hpp
  1840. include/ncbi-tools++/objects/macro/Table_match_type.hpp
  1841. include/ncbi-tools++/objects/macro/Table_match_type_.hpp
  1842. include/ncbi-tools++/objects/macro/Technique_type.hpp
  1843. include/ncbi-tools++/objects/macro/Technique_type_.hpp
  1844. include/ncbi-tools++/objects/macro/Text_marker.hpp
  1845. include/ncbi-tools++/objects/macro/Text_marker_.hpp
  1846. include/ncbi-tools++/objects/macro/Text_portion.hpp
  1847. include/ncbi-tools++/objects/macro/Text_portion_.hpp
  1848. include/ncbi-tools++/objects/macro/Text_transform.hpp
  1849. include/ncbi-tools++/objects/macro/Text_transform_.hpp
  1850. include/ncbi-tools++/objects/macro/Text_transform_set.hpp
  1851. include/ncbi-tools++/objects/macro/Text_transform_set_.hpp
  1852. include/ncbi-tools++/objects/macro/Topology_type.hpp
  1853. include/ncbi-tools++/objects/macro/Topology_type_.hpp
  1854. include/ncbi-tools++/objects/macro/Translation_constraint.hpp
  1855. include/ncbi-tools++/objects/macro/Translation_constraint_.hpp
  1856. include/ncbi-tools++/objects/macro/Truncate_ends_partial_type.hpp
  1857. include/ncbi-tools++/objects/macro/Truncate_ends_partial_type_.hpp
  1858. include/ncbi-tools++/objects/macro/Updat_repla_ec_numbe_actio.hpp
  1859. include/ncbi-tools++/objects/macro/Updat_repla_ec_numbe_actio_.hpp
  1860. include/ncbi-tools++/objects/macro/Update_sequences_action.hpp
  1861. include/ncbi-tools++/objects/macro/Update_sequences_action_.hpp
  1862. include/ncbi-tools++/objects/macro/Word_substitution.hpp
  1863. include/ncbi-tools++/objects/macro/Word_substitution_.hpp
  1864. include/ncbi-tools++/objects/macro/Word_substitution_set.hpp
  1865. include/ncbi-tools++/objects/macro/Word_substitution_set_.hpp
  1866. include/ncbi-tools++/objects/macro/Xref_type.hpp
  1867. include/ncbi-tools++/objects/macro/Xref_type_.hpp
  1868. include/ncbi-tools++/objects/macro/macro__.hpp
  1869. include/ncbi-tools++/objects/medlars/.cvsignore
  1870. include/ncbi-tools++/objects/medlars/.gitignore
  1871. include/ncbi-tools++/objects/medlars/Medlars_entry.hpp
  1872. include/ncbi-tools++/objects/medlars/Medlars_entry_.hpp
  1873. include/ncbi-tools++/objects/medlars/Medlars_record.hpp
  1874. include/ncbi-tools++/objects/medlars/Medlars_record_.hpp
  1875. include/ncbi-tools++/objects/medlars/NCBI_Medlars_module.hpp
  1876. include/ncbi-tools++/objects/medlars/medlars__.hpp
  1877. include/ncbi-tools++/objects/medline/.cvsignore
  1878. include/ncbi-tools++/objects/medline/.gitignore
  1879. include/ncbi-tools++/objects/medline/DocRef.hpp
  1880. include/ncbi-tools++/objects/medline/DocRef_.hpp
  1881. include/ncbi-tools++/objects/medline/Medline_entry.hpp
  1882. include/ncbi-tools++/objects/medline/Medline_entry_.hpp
  1883. include/ncbi-tools++/objects/medline/Medline_field.hpp
  1884. include/ncbi-tools++/objects/medline/Medline_field_.hpp
  1885. include/ncbi-tools++/objects/medline/Medline_mesh.hpp
  1886. include/ncbi-tools++/objects/medline/Medline_mesh_.hpp
  1887. include/ncbi-tools++/objects/medline/Medline_qual.hpp
  1888. include/ncbi-tools++/objects/medline/Medline_qual_.hpp
  1889. include/ncbi-tools++/objects/medline/Medline_rn.hpp
  1890. include/ncbi-tools++/objects/medline/Medline_rn_.hpp
  1891. include/ncbi-tools++/objects/medline/Medline_si.hpp
  1892. include/ncbi-tools++/objects/medline/Medline_si_.hpp
  1893. include/ncbi-tools++/objects/medline/NCBI_Medline_module.hpp
  1894. include/ncbi-tools++/objects/medline/medline__.hpp
  1895. include/ncbi-tools++/objects/mim/.cvsignore
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  1897. include/ncbi-tools++/objects/mim/Mim_allelic_variant.hpp
  1898. include/ncbi-tools++/objects/mim/Mim_allelic_variant_.hpp
  1899. include/ncbi-tools++/objects/mim/Mim_author.hpp
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  1901. include/ncbi-tools++/objects/mim/Mim_cit.hpp
  1902. include/ncbi-tools++/objects/mim/Mim_cit_.hpp
  1903. include/ncbi-tools++/objects/mim/Mim_date.hpp
  1904. include/ncbi-tools++/objects/mim/Mim_date_.hpp
  1905. include/ncbi-tools++/objects/mim/Mim_edit_item.hpp
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  1907. include/ncbi-tools++/objects/mim/Mim_entries.hpp
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  1914. include/ncbi-tools++/objects/mim/Mim_link_.hpp
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  1917. include/ncbi-tools++/objects/mim/Mim_reference.hpp
  1918. include/ncbi-tools++/objects/mim/Mim_reference_.hpp
  1919. include/ncbi-tools++/objects/mim/Mim_set.hpp
  1920. include/ncbi-tools++/objects/mim/Mim_set_.hpp
  1921. include/ncbi-tools++/objects/mim/Mim_text.hpp
  1922. include/ncbi-tools++/objects/mim/Mim_text_.hpp
  1923. include/ncbi-tools++/objects/mim/NCBI_Mim_module.hpp
  1924. include/ncbi-tools++/objects/mim/mim__.hpp
  1925. include/ncbi-tools++/objects/misc/error_codes.hpp
  1926. include/ncbi-tools++/objects/misc/sequence_macros.hpp
  1927. include/ncbi-tools++/objects/misc/sequence_util_macros.hpp
  1928. include/ncbi-tools++/objects/mla/.cvsignore
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  1930. include/ncbi-tools++/objects/mla/Error_val.hpp
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  1933. include/ncbi-tools++/objects/mla/Mla_back_.hpp
  1934. include/ncbi-tools++/objects/mla/Mla_request.hpp
  1935. include/ncbi-tools++/objects/mla/Mla_request_.hpp
  1936. include/ncbi-tools++/objects/mla/NCBI_MedArchive_module.hpp
  1937. include/ncbi-tools++/objects/mla/Title_msg.hpp
  1938. include/ncbi-tools++/objects/mla/Title_msg_.hpp
  1939. include/ncbi-tools++/objects/mla/Title_msg_list.hpp
  1940. include/ncbi-tools++/objects/mla/Title_msg_list_.hpp
  1941. include/ncbi-tools++/objects/mla/Title_type.hpp
  1942. include/ncbi-tools++/objects/mla/Title_type_.hpp
  1943. include/ncbi-tools++/objects/mla/mla__.hpp
  1944. include/ncbi-tools++/objects/mla/mla_client.hpp
  1945. include/ncbi-tools++/objects/mla/mla_client_.hpp
  1946. include/ncbi-tools++/objects/mmdb1/.cvsignore
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  1948. include/ncbi-tools++/objects/mmdb1/Atom.hpp
  1949. include/ncbi-tools++/objects/mmdb1/Atom_.hpp
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  1951. include/ncbi-tools++/objects/mmdb1/Atom_id_.hpp
  1952. include/ncbi-tools++/objects/mmdb1/Atom_pntr.hpp
  1953. include/ncbi-tools++/objects/mmdb1/Atom_pntr_.hpp
  1954. include/ncbi-tools++/objects/mmdb1/Atom_pntr_set.hpp
  1955. include/ncbi-tools++/objects/mmdb1/Atom_pntr_set_.hpp
  1956. include/ncbi-tools++/objects/mmdb1/Biomol_descr.hpp
  1957. include/ncbi-tools++/objects/mmdb1/Biomol_descr_.hpp
  1958. include/ncbi-tools++/objects/mmdb1/Biost_resid_graph_set_pntr.hpp
  1959. include/ncbi-tools++/objects/mmdb1/Biost_resid_graph_set_pntr_.hpp
  1960. include/ncbi-tools++/objects/mmdb1/Biostruc.hpp
  1961. include/ncbi-tools++/objects/mmdb1/Biostruc_.hpp
  1962. include/ncbi-tools++/objects/mmdb1/Biostruc_annot_set.hpp
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  1964. include/ncbi-tools++/objects/mmdb1/Biostruc_descr.hpp
  1965. include/ncbi-tools++/objects/mmdb1/Biostruc_descr_.hpp
  1966. include/ncbi-tools++/objects/mmdb1/Biostruc_graph.hpp
  1967. include/ncbi-tools++/objects/mmdb1/Biostruc_graph_.hpp
  1968. include/ncbi-tools++/objects/mmdb1/Biostruc_graph_pntr.hpp
  1969. include/ncbi-tools++/objects/mmdb1/Biostruc_graph_pntr_.hpp
  1970. include/ncbi-tools++/objects/mmdb1/Biostruc_history.hpp
  1971. include/ncbi-tools++/objects/mmdb1/Biostruc_history_.hpp
  1972. include/ncbi-tools++/objects/mmdb1/Biostruc_id.hpp
  1973. include/ncbi-tools++/objects/mmdb1/Biostruc_id_.hpp
  1974. include/ncbi-tools++/objects/mmdb1/Biostruc_replace.hpp
  1975. include/ncbi-tools++/objects/mmdb1/Biostruc_replace_.hpp
  1976. include/ncbi-tools++/objects/mmdb1/Biostruc_residue_graph_set.hpp
  1977. include/ncbi-tools++/objects/mmdb1/Biostruc_residue_graph_set_.hpp
  1978. include/ncbi-tools++/objects/mmdb1/Biostruc_set.hpp
  1979. include/ncbi-tools++/objects/mmdb1/Biostruc_set_.hpp
  1980. include/ncbi-tools++/objects/mmdb1/Biostruc_source.hpp
  1981. include/ncbi-tools++/objects/mmdb1/Biostruc_source_.hpp
  1982. include/ncbi-tools++/objects/mmdb1/Chiral_center.hpp
  1983. include/ncbi-tools++/objects/mmdb1/Chiral_center_.hpp
  1984. include/ncbi-tools++/objects/mmdb1/Inter_residue_bond.hpp
  1985. include/ncbi-tools++/objects/mmdb1/Inter_residue_bond_.hpp
  1986. include/ncbi-tools++/objects/mmdb1/Intra_residue_bond.hpp
  1987. include/ncbi-tools++/objects/mmdb1/Intra_residue_bond_.hpp
  1988. include/ncbi-tools++/objects/mmdb1/MMDB_Chemical_graph_module.hpp
  1989. include/ncbi-tools++/objects/mmdb1/MMDB_module.hpp
  1990. include/ncbi-tools++/objects/mmdb1/Mmdb_id.hpp
  1991. include/ncbi-tools++/objects/mmdb1/Mmdb_id_.hpp
  1992. include/ncbi-tools++/objects/mmdb1/Molecule_graph.hpp
  1993. include/ncbi-tools++/objects/mmdb1/Molecule_graph_.hpp
  1994. include/ncbi-tools++/objects/mmdb1/Molecule_id.hpp
  1995. include/ncbi-tools++/objects/mmdb1/Molecule_id_.hpp
  1996. include/ncbi-tools++/objects/mmdb1/PCSubstance_id.hpp
  1997. include/ncbi-tools++/objects/mmdb1/PCSubstance_id_.hpp
  1998. include/ncbi-tools++/objects/mmdb1/Residue.hpp
  1999. include/ncbi-tools++/objects/mmdb1/Residue_.hpp
  2000. include/ncbi-tools++/objects/mmdb1/Residue_graph.hpp
  2001. include/ncbi-tools++/objects/mmdb1/Residue_graph_.hpp
  2002. include/ncbi-tools++/objects/mmdb1/Residue_graph_id.hpp
  2003. include/ncbi-tools++/objects/mmdb1/Residue_graph_id_.hpp
  2004. include/ncbi-tools++/objects/mmdb1/Residue_graph_pntr.hpp
  2005. include/ncbi-tools++/objects/mmdb1/Residue_graph_pntr_.hpp
  2006. include/ncbi-tools++/objects/mmdb1/Residue_id.hpp
  2007. include/ncbi-tools++/objects/mmdb1/Residue_id_.hpp
  2008. include/ncbi-tools++/objects/mmdb1/mmdb1__.hpp
  2009. include/ncbi-tools++/objects/mmdb2/.cvsignore
  2010. include/ncbi-tools++/objects/mmdb2/.gitignore
  2011. include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id.hpp
  2012. include/ncbi-tools++/objects/mmdb2/Alternate_conformation_id_.hpp
  2013. include/ncbi-tools++/objects/mmdb2/Alternate_conformation_ids.hpp
  2014. include/ncbi-tools++/objects/mmdb2/Alternate_conformation_ids_.hpp
  2015. include/ncbi-tools++/objects/mmdb2/Anisotro_temperatu_factors.hpp
  2016. include/ncbi-tools++/objects/mmdb2/Anisotro_temperatu_factors_.hpp
  2017. include/ncbi-tools++/objects/mmdb2/Atomic_coordinates.hpp
  2018. include/ncbi-tools++/objects/mmdb2/Atomic_coordinates_.hpp
  2019. include/ncbi-tools++/objects/mmdb2/Atomic_occupancies.hpp
  2020. include/ncbi-tools++/objects/mmdb2/Atomic_occupancies_.hpp
  2021. include/ncbi-tools++/objects/mmdb2/Atomic_temperature_factors.hpp
  2022. include/ncbi-tools++/objects/mmdb2/Atomic_temperature_factors_.hpp
  2023. include/ncbi-tools++/objects/mmdb2/Biostruc_model.hpp
  2024. include/ncbi-tools++/objects/mmdb2/Biostruc_model_.hpp
  2025. include/ncbi-tools++/objects/mmdb2/Conformation_ensemble.hpp
  2026. include/ncbi-tools++/objects/mmdb2/Conformation_ensemble_.hpp
  2027. include/ncbi-tools++/objects/mmdb2/Coordinates.hpp
  2028. include/ncbi-tools++/objects/mmdb2/Coordinates_.hpp
  2029. include/ncbi-tools++/objects/mmdb2/Density_coordinates.hpp
  2030. include/ncbi-tools++/objects/mmdb2/Density_coordinates_.hpp
  2031. include/ncbi-tools++/objects/mmdb2/Isotropi_temperatu_factors.hpp
  2032. include/ncbi-tools++/objects/mmdb2/Isotropi_temperatu_factors_.hpp
  2033. include/ncbi-tools++/objects/mmdb2/MMDB_Structural_model_module.hpp
  2034. include/ncbi-tools++/objects/mmdb2/Model_coordinate_set.hpp
  2035. include/ncbi-tools++/objects/mmdb2/Model_coordinate_set_.hpp
  2036. include/ncbi-tools++/objects/mmdb2/Model_coordinate_set_id.hpp
  2037. include/ncbi-tools++/objects/mmdb2/Model_coordinate_set_id_.hpp
  2038. include/ncbi-tools++/objects/mmdb2/Model_descr.hpp
  2039. include/ncbi-tools++/objects/mmdb2/Model_descr_.hpp
  2040. include/ncbi-tools++/objects/mmdb2/Model_id.hpp
  2041. include/ncbi-tools++/objects/mmdb2/Model_id_.hpp
  2042. include/ncbi-tools++/objects/mmdb2/Model_space.hpp
  2043. include/ncbi-tools++/objects/mmdb2/Model_space_.hpp
  2044. include/ncbi-tools++/objects/mmdb2/Model_space_points.hpp
  2045. include/ncbi-tools++/objects/mmdb2/Model_space_points_.hpp
  2046. include/ncbi-tools++/objects/mmdb2/Model_type.hpp
  2047. include/ncbi-tools++/objects/mmdb2/Model_type_.hpp
  2048. include/ncbi-tools++/objects/mmdb2/Reference_frame.hpp
  2049. include/ncbi-tools++/objects/mmdb2/Reference_frame_.hpp
  2050. include/ncbi-tools++/objects/mmdb2/Surface_coordinates.hpp
  2051. include/ncbi-tools++/objects/mmdb2/Surface_coordinates_.hpp
  2052. include/ncbi-tools++/objects/mmdb2/T_mesh.hpp
  2053. include/ncbi-tools++/objects/mmdb2/T_mesh_.hpp
  2054. include/ncbi-tools++/objects/mmdb2/Triangles.hpp
  2055. include/ncbi-tools++/objects/mmdb2/Triangles_.hpp
  2056. include/ncbi-tools++/objects/mmdb2/mmdb2__.hpp
  2057. include/ncbi-tools++/objects/mmdb3/.cvsignore
  2058. include/ncbi-tools++/objects/mmdb3/.gitignore
  2059. include/ncbi-tools++/objects/mmdb3/Align_stats.hpp
  2060. include/ncbi-tools++/objects/mmdb3/Align_stats_.hpp
  2061. include/ncbi-tools++/objects/mmdb3/Atom_pntrs.hpp
  2062. include/ncbi-tools++/objects/mmdb3/Atom_pntrs_.hpp
  2063. include/ncbi-tools++/objects/mmdb3/Biostruc_feature.hpp
  2064. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_.hpp
  2065. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_id.hpp
  2066. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_id_.hpp
  2067. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_set.hpp
  2068. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_set_.hpp
  2069. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_set_descr.hpp
  2070. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_set_descr_.hpp
  2071. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_set_id.hpp
  2072. include/ncbi-tools++/objects/mmdb3/Biostruc_feature_set_id_.hpp
  2073. include/ncbi-tools++/objects/mmdb3/Biostruc_molecule_pntr.hpp
  2074. include/ncbi-tools++/objects/mmdb3/Biostruc_molecule_pntr_.hpp
  2075. include/ncbi-tools++/objects/mmdb3/Biostruc_script.hpp
  2076. include/ncbi-tools++/objects/mmdb3/Biostruc_script_.hpp
  2077. include/ncbi-tools++/objects/mmdb3/Biostruc_script_step.hpp
  2078. include/ncbi-tools++/objects/mmdb3/Biostruc_script_step_.hpp
  2079. include/ncbi-tools++/objects/mmdb3/Brick.hpp
  2080. include/ncbi-tools++/objects/mmdb3/Brick_.hpp
  2081. include/ncbi-tools++/objects/mmdb3/Camera.hpp
  2082. include/ncbi-tools++/objects/mmdb3/Camera_.hpp
  2083. include/ncbi-tools++/objects/mmdb3/Chem_graph_alignment.hpp
  2084. include/ncbi-tools++/objects/mmdb3/Chem_graph_alignment_.hpp
  2085. include/ncbi-tools++/objects/mmdb3/Chem_graph_interaction.hpp
  2086. include/ncbi-tools++/objects/mmdb3/Chem_graph_interaction_.hpp
  2087. include/ncbi-tools++/objects/mmdb3/Chem_graph_pntrs.hpp
  2088. include/ncbi-tools++/objects/mmdb3/Chem_graph_pntrs_.hpp
  2089. include/ncbi-tools++/objects/mmdb3/Color_prop.hpp
  2090. include/ncbi-tools++/objects/mmdb3/Color_prop_.hpp
  2091. include/ncbi-tools++/objects/mmdb3/Cone.hpp
  2092. include/ncbi-tools++/objects/mmdb3/Cone_.hpp
  2093. include/ncbi-tools++/objects/mmdb3/Cylinder.hpp
  2094. include/ncbi-tools++/objects/mmdb3/Cylinder_.hpp
  2095. include/ncbi-tools++/objects/mmdb3/GL_matrix.hpp
  2096. include/ncbi-tools++/objects/mmdb3/GL_matrix_.hpp
  2097. include/ncbi-tools++/objects/mmdb3/MMDB_Features_module.hpp
  2098. include/ncbi-tools++/objects/mmdb3/Model_space_point.hpp
  2099. include/ncbi-tools++/objects/mmdb3/Model_space_point_.hpp
  2100. include/ncbi-tools++/objects/mmdb3/Molecule_pntrs.hpp
  2101. include/ncbi-tools++/objects/mmdb3/Molecule_pntrs_.hpp
  2102. include/ncbi-tools++/objects/mmdb3/Move.hpp
  2103. include/ncbi-tools++/objects/mmdb3/Move_.hpp
  2104. include/ncbi-tools++/objects/mmdb3/Other_feature.hpp
  2105. include/ncbi-tools++/objects/mmdb3/Other_feature_.hpp
  2106. include/ncbi-tools++/objects/mmdb3/RealValue.hpp
  2107. include/ncbi-tools++/objects/mmdb3/RealValue_.hpp
  2108. include/ncbi-tools++/objects/mmdb3/Region_boundary.hpp
  2109. include/ncbi-tools++/objects/mmdb3/Region_boundary_.hpp
  2110. include/ncbi-tools++/objects/mmdb3/Region_coordinates.hpp
  2111. include/ncbi-tools++/objects/mmdb3/Region_coordinates_.hpp
  2112. include/ncbi-tools++/objects/mmdb3/Region_pntrs.hpp
  2113. include/ncbi-tools++/objects/mmdb3/Region_pntrs_.hpp
  2114. include/ncbi-tools++/objects/mmdb3/Region_similarity.hpp
  2115. include/ncbi-tools++/objects/mmdb3/Region_similarity_.hpp
  2116. include/ncbi-tools++/objects/mmdb3/Render_prop.hpp
  2117. include/ncbi-tools++/objects/mmdb3/Render_prop_.hpp
  2118. include/ncbi-tools++/objects/mmdb3/Residue_explicit_pntrs.hpp
  2119. include/ncbi-tools++/objects/mmdb3/Residue_explicit_pntrs_.hpp
  2120. include/ncbi-tools++/objects/mmdb3/Residue_interval_pntr.hpp
  2121. include/ncbi-tools++/objects/mmdb3/Residue_interval_pntr_.hpp
  2122. include/ncbi-tools++/objects/mmdb3/Residue_pntrs.hpp
  2123. include/ncbi-tools++/objects/mmdb3/Residue_pntrs_.hpp
  2124. include/ncbi-tools++/objects/mmdb3/Rot_matrix.hpp
  2125. include/ncbi-tools++/objects/mmdb3/Rot_matrix_.hpp
  2126. include/ncbi-tools++/objects/mmdb3/Sphere.hpp
  2127. include/ncbi-tools++/objects/mmdb3/Sphere_.hpp
  2128. include/ncbi-tools++/objects/mmdb3/Step_id.hpp
  2129. include/ncbi-tools++/objects/mmdb3/Step_id_.hpp
  2130. include/ncbi-tools++/objects/mmdb3/Trans_matrix.hpp
  2131. include/ncbi-tools++/objects/mmdb3/Trans_matrix_.hpp
  2132. include/ncbi-tools++/objects/mmdb3/Transform.hpp
  2133. include/ncbi-tools++/objects/mmdb3/Transform_.hpp
  2134. include/ncbi-tools++/objects/mmdb3/mmdb3__.hpp
  2135. include/ncbi-tools++/objects/ncbimime/.cvsignore
  2136. include/ncbi-tools++/objects/ncbimime/.gitignore
  2137. include/ncbi-tools++/objects/ncbimime/Biostruc_align.hpp
  2138. include/ncbi-tools++/objects/ncbimime/Biostruc_align_.hpp
  2139. include/ncbi-tools++/objects/ncbimime/Biostruc_align_seq.hpp
  2140. include/ncbi-tools++/objects/ncbimime/Biostruc_align_seq_.hpp
  2141. include/ncbi-tools++/objects/ncbimime/Biostruc_seq.hpp
  2142. include/ncbi-tools++/objects/ncbimime/Biostruc_seq_.hpp
  2143. include/ncbi-tools++/objects/ncbimime/Biostruc_seqs.hpp
  2144. include/ncbi-tools++/objects/ncbimime/Biostruc_seqs_.hpp
  2145. include/ncbi-tools++/objects/ncbimime/Biostruc_seqs_aligns_cdd.hpp
  2146. include/ncbi-tools++/objects/ncbimime/Biostruc_seqs_aligns_cdd_.hpp
  2147. include/ncbi-tools++/objects/ncbimime/Bundle_seqs_aligns.hpp
  2148. include/ncbi-tools++/objects/ncbimime/Bundle_seqs_aligns_.hpp
  2149. include/ncbi-tools++/objects/ncbimime/Entrez_general.hpp
  2150. include/ncbi-tools++/objects/ncbimime/Entrez_general_.hpp
  2151. include/ncbi-tools++/objects/ncbimime/Entrez_style.hpp
  2152. include/ncbi-tools++/objects/ncbimime/Entrez_style_.hpp
  2153. include/ncbi-tools++/objects/ncbimime/NCBI_Mime_module.hpp
  2154. include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1.hpp
  2155. include/ncbi-tools++/objects/ncbimime/Ncbi_mime_asn1_.hpp
  2156. include/ncbi-tools++/objects/ncbimime/ncbimime__.hpp
  2157. include/ncbi-tools++/objects/objprt/.cvsignore
  2158. include/ncbi-tools++/objects/objprt/.gitignore
  2159. include/ncbi-tools++/objects/objprt/NCBI_ObjPrt_module.hpp
  2160. include/ncbi-tools++/objects/objprt/PrintForm.hpp
  2161. include/ncbi-tools++/objects/objprt/PrintFormBlock.hpp
  2162. include/ncbi-tools++/objects/objprt/PrintFormBlock_.hpp
  2163. include/ncbi-tools++/objects/objprt/PrintFormBoolean.hpp
  2164. include/ncbi-tools++/objects/objprt/PrintFormBoolean_.hpp
  2165. include/ncbi-tools++/objects/objprt/PrintFormEnum.hpp
  2166. include/ncbi-tools++/objects/objprt/PrintFormEnum_.hpp
  2167. include/ncbi-tools++/objects/objprt/PrintFormText.hpp
  2168. include/ncbi-tools++/objects/objprt/PrintFormText_.hpp
  2169. include/ncbi-tools++/objects/objprt/PrintForm_.hpp
  2170. include/ncbi-tools++/objects/objprt/PrintFormat.hpp
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  2173. include/ncbi-tools++/objects/objprt/PrintTemplateSet.hpp
  2174. include/ncbi-tools++/objects/objprt/PrintTemplateSet_.hpp
  2175. include/ncbi-tools++/objects/objprt/PrintTemplate_.hpp
  2176. include/ncbi-tools++/objects/objprt/TemplateName.hpp
  2177. include/ncbi-tools++/objects/objprt/TemplateName_.hpp
  2178. include/ncbi-tools++/objects/objprt/UserFormat.hpp
  2179. include/ncbi-tools++/objects/objprt/UserFormat_.hpp
  2180. include/ncbi-tools++/objects/objprt/objprt__.hpp
  2181. include/ncbi-tools++/objects/omssa/.cvsignore
  2182. include/ncbi-tools++/objects/omssa/.gitignore
  2183. include/ncbi-tools++/objects/omssa/MSBioseq.hpp
  2184. include/ncbi-tools++/objects/omssa/MSBioseqSet.hpp
  2185. include/ncbi-tools++/objects/omssa/MSBioseqSet_.hpp
  2186. include/ncbi-tools++/objects/omssa/MSBioseq_.hpp
  2187. include/ncbi-tools++/objects/omssa/MSCalcCharge.hpp
  2188. include/ncbi-tools++/objects/omssa/MSCalcCharge_.hpp
  2189. include/ncbi-tools++/objects/omssa/MSCalcPlusOne.hpp
  2190. include/ncbi-tools++/objects/omssa/MSCalcPlusOne_.hpp
  2191. include/ncbi-tools++/objects/omssa/MSChargeHandle.hpp
  2192. include/ncbi-tools++/objects/omssa/MSChargeHandle_.hpp
  2193. include/ncbi-tools++/objects/omssa/MSEnzymes.hpp
  2194. include/ncbi-tools++/objects/omssa/MSEnzymes_.hpp
  2195. include/ncbi-tools++/objects/omssa/MSHitError.hpp
  2196. include/ncbi-tools++/objects/omssa/MSHitError_.hpp
  2197. include/ncbi-tools++/objects/omssa/MSHitSet.hpp
  2198. include/ncbi-tools++/objects/omssa/MSHitSet_.hpp
  2199. include/ncbi-tools++/objects/omssa/MSHits.hpp
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  2201. include/ncbi-tools++/objects/omssa/MSImmonium.hpp
  2202. include/ncbi-tools++/objects/omssa/MSImmonium_.hpp
  2203. include/ncbi-tools++/objects/omssa/MSInFile.hpp
  2204. include/ncbi-tools++/objects/omssa/MSInFile_.hpp
  2205. include/ncbi-tools++/objects/omssa/MSIon.hpp
  2206. include/ncbi-tools++/objects/omssa/MSIonAnnot.hpp
  2207. include/ncbi-tools++/objects/omssa/MSIonAnnot_.hpp
  2208. include/ncbi-tools++/objects/omssa/MSIonIsotopicType.hpp
  2209. include/ncbi-tools++/objects/omssa/MSIonIsotopicType_.hpp
  2210. include/ncbi-tools++/objects/omssa/MSIonNeutralLoss.hpp
  2211. include/ncbi-tools++/objects/omssa/MSIonNeutralLoss_.hpp
  2212. include/ncbi-tools++/objects/omssa/MSIonType.hpp
  2213. include/ncbi-tools++/objects/omssa/MSIonType_.hpp
  2214. include/ncbi-tools++/objects/omssa/MSIon_.hpp
  2215. include/ncbi-tools++/objects/omssa/MSIterativeSettings.hpp
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  2217. include/ncbi-tools++/objects/omssa/MSLibrarySettings.hpp
  2218. include/ncbi-tools++/objects/omssa/MSLibrarySettings_.hpp
  2219. include/ncbi-tools++/objects/omssa/MSMZHit.hpp
  2220. include/ncbi-tools++/objects/omssa/MSMZHit_.hpp
  2221. include/ncbi-tools++/objects/omssa/MSMassSet.hpp
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  2223. include/ncbi-tools++/objects/omssa/MSMod.hpp
  2224. include/ncbi-tools++/objects/omssa/MSModHit.hpp
  2225. include/ncbi-tools++/objects/omssa/MSModHit_.hpp
  2226. include/ncbi-tools++/objects/omssa/MSModSpec.hpp
  2227. include/ncbi-tools++/objects/omssa/MSModSpecSet.hpp
  2228. include/ncbi-tools++/objects/omssa/MSModSpecSet_.hpp
  2229. include/ncbi-tools++/objects/omssa/MSModSpec_.hpp
  2230. include/ncbi-tools++/objects/omssa/MSModType.hpp
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  2232. include/ncbi-tools++/objects/omssa/MSMod_.hpp
  2233. include/ncbi-tools++/objects/omssa/MSOutFile.hpp
  2234. include/ncbi-tools++/objects/omssa/MSOutFile_.hpp
  2235. include/ncbi-tools++/objects/omssa/MSPepHit.hpp
  2236. include/ncbi-tools++/objects/omssa/MSPepHit_.hpp
  2237. include/ncbi-tools++/objects/omssa/MSRequest.hpp
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  2240. include/ncbi-tools++/objects/omssa/MSResponseError.hpp
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  2243. include/ncbi-tools++/objects/omssa/MSScoreSet.hpp
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  2246. include/ncbi-tools++/objects/omssa/MSSearchSettings.hpp
  2247. include/ncbi-tools++/objects/omssa/MSSearchSettingsSet.hpp
  2248. include/ncbi-tools++/objects/omssa/MSSearchSettingsSet_.hpp
  2249. include/ncbi-tools++/objects/omssa/MSSearchSettings_.hpp
  2250. include/ncbi-tools++/objects/omssa/MSSearchType.hpp
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  2252. include/ncbi-tools++/objects/omssa/MSSearch_.hpp
  2253. include/ncbi-tools++/objects/omssa/MSSerialDataFormat.hpp
  2254. include/ncbi-tools++/objects/omssa/MSSerialDataFormat_.hpp
  2255. include/ncbi-tools++/objects/omssa/MSSpectrum.hpp
  2256. include/ncbi-tools++/objects/omssa/MSSpectrumFileType.hpp
  2257. include/ncbi-tools++/objects/omssa/MSSpectrumFileType_.hpp
  2258. include/ncbi-tools++/objects/omssa/MSSpectrum_.hpp
  2259. include/ncbi-tools++/objects/omssa/MSSpectrumset.hpp
  2260. include/ncbi-tools++/objects/omssa/MSSpectrumset_.hpp
  2261. include/ncbi-tools++/objects/omssa/MSUserAnnot.hpp
  2262. include/ncbi-tools++/objects/omssa/MSUserAnnot_.hpp
  2263. include/ncbi-tools++/objects/omssa/MSZdependence.hpp
  2264. include/ncbi-tools++/objects/omssa/MSZdependence_.hpp
  2265. include/ncbi-tools++/objects/omssa/NameValue.hpp
  2266. include/ncbi-tools++/objects/omssa/NameValue_.hpp
  2267. include/ncbi-tools++/objects/omssa/OMSSA_module.hpp
  2268. include/ncbi-tools++/objects/omssa/omssa__.hpp
  2269. include/ncbi-tools++/objects/pcassay/.cvsignore
  2270. include/ncbi-tools++/objects/pcassay/.gitignore
  2271. include/ncbi-tools++/objects/pcassay/NCBI_PCAssay_module.hpp
  2272. include/ncbi-tools++/objects/pcassay/PC_AnnotatedXRef.hpp
  2273. include/ncbi-tools++/objects/pcassay/PC_AnnotatedXRef_.hpp
  2274. include/ncbi-tools++/objects/pcassay/PC_AssayContainer.hpp
  2275. include/ncbi-tools++/objects/pcassay/PC_AssayContainer_.hpp
  2276. include/ncbi-tools++/objects/pcassay/PC_AssayDRAttr.hpp
  2277. include/ncbi-tools++/objects/pcassay/PC_AssayDRAttr_.hpp
  2278. include/ncbi-tools++/objects/pcassay/PC_AssayData.hpp
  2279. include/ncbi-tools++/objects/pcassay/PC_AssayData_.hpp
  2280. include/ncbi-tools++/objects/pcassay/PC_AssayDescription.hpp
  2281. include/ncbi-tools++/objects/pcassay/PC_AssayDescription_.hpp
  2282. include/ncbi-tools++/objects/pcassay/PC_AssayPanel.hpp
  2283. include/ncbi-tools++/objects/pcassay/PC_AssayPanelMember.hpp
  2284. include/ncbi-tools++/objects/pcassay/PC_AssayPanelMember_.hpp
  2285. include/ncbi-tools++/objects/pcassay/PC_AssayPanelTestResult.hpp
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  2287. include/ncbi-tools++/objects/pcassay/PC_AssayPanel_.hpp
  2288. include/ncbi-tools++/objects/pcassay/PC_AssayResults.hpp
  2289. include/ncbi-tools++/objects/pcassay/PC_AssayResults_.hpp
  2290. include/ncbi-tools++/objects/pcassay/PC_AssaySubmit.hpp
  2291. include/ncbi-tools++/objects/pcassay/PC_AssaySubmit_.hpp
  2292. include/ncbi-tools++/objects/pcassay/PC_AssayTargetInfo.hpp
  2293. include/ncbi-tools++/objects/pcassay/PC_AssayTargetInfo_.hpp
  2294. include/ncbi-tools++/objects/pcassay/PC_CategorizedComment.hpp
  2295. include/ncbi-tools++/objects/pcassay/PC_CategorizedComment_.hpp
  2296. include/ncbi-tools++/objects/pcassay/PC_ConcentrationAttr.hpp
  2297. include/ncbi-tools++/objects/pcassay/PC_ConcentrationAttr_.hpp
  2298. include/ncbi-tools++/objects/pcassay/PC_IntegerMinMax.hpp
  2299. include/ncbi-tools++/objects/pcassay/PC_IntegerMinMax_.hpp
  2300. include/ncbi-tools++/objects/pcassay/PC_RealMinMax.hpp
  2301. include/ncbi-tools++/objects/pcassay/PC_RealMinMax_.hpp
  2302. include/ncbi-tools++/objects/pcassay/PC_ResultType.hpp
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  2304. include/ncbi-tools++/objects/pcassay/pcassay__.hpp
  2305. include/ncbi-tools++/objects/pcsubstance/.cvsignore
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  2307. include/ncbi-tools++/objects/pcsubstance/NCBI_PCSubstance_module.hpp
  2308. include/ncbi-tools++/objects/pcsubstance/PC_AtomInt.hpp
  2309. include/ncbi-tools++/objects/pcsubstance/PC_AtomInt_.hpp
  2310. include/ncbi-tools++/objects/pcsubstance/PC_AtomRadical.hpp
  2311. include/ncbi-tools++/objects/pcsubstance/PC_AtomRadical_.hpp
  2312. include/ncbi-tools++/objects/pcsubstance/PC_AtomSource.hpp
  2313. include/ncbi-tools++/objects/pcsubstance/PC_AtomSource_.hpp
  2314. include/ncbi-tools++/objects/pcsubstance/PC_AtomString.hpp
  2315. include/ncbi-tools++/objects/pcsubstance/PC_AtomString_.hpp
  2316. include/ncbi-tools++/objects/pcsubstance/PC_Atoms.hpp
  2317. include/ncbi-tools++/objects/pcsubstance/PC_Atoms_.hpp
  2318. include/ncbi-tools++/objects/pcsubstance/PC_BondAnnotation.hpp
  2319. include/ncbi-tools++/objects/pcsubstance/PC_BondAnnotation_.hpp
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  2370. include/ncbi-tools++/objects/pcsubstance/PC_StereoTrigonalBiPyramid.hpp
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  2383. include/ncbi-tools++/objects/proj/.cvsignore
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  2666. include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_AttachAnnot.hpp
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  2668. include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_AttachSeq.hpp
  2669. include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_AttachSeqEntry.hpp
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  2672. include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_AttachSet.hpp
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  2678. include/ncbi-tools++/objects/seqedit/SeqEdit_Cmd_RemoveAnnot.hpp
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  2703. include/ncbi-tools++/objects/seqfeat/.cvsignore
  2704. include/ncbi-tools++/objects/seqfeat/.gitignore
  2705. include/ncbi-tools++/objects/seqfeat/BinomialOrgName.hpp
  2706. include/ncbi-tools++/objects/seqfeat/BinomialOrgName_.hpp
  2707. include/ncbi-tools++/objects/seqfeat/BioSource.hpp
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  2713. include/ncbi-tools++/objects/seqfeat/Clone_seq.hpp
  2714. include/ncbi-tools++/objects/seqfeat/Clone_seq_.hpp
  2715. include/ncbi-tools++/objects/seqfeat/Clone_seq_set.hpp
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  2719. include/ncbi-tools++/objects/seqfeat/Delta_item.hpp
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  2727. include/ncbi-tools++/objects/seqfeat/Ext_loc.hpp
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  2729. include/ncbi-tools++/objects/seqfeat/Feat_id.hpp
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  2731. include/ncbi-tools++/objects/seqfeat/Gb_qual.hpp
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  2733. include/ncbi-tools++/objects/seqfeat/Gene_nomenclature.hpp
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  2735. include/ncbi-tools++/objects/seqfeat/Gene_ref.hpp
  2736. include/ncbi-tools++/objects/seqfeat/Gene_ref_.hpp
  2737. include/ncbi-tools++/objects/seqfeat/Genetic_code.hpp
  2738. include/ncbi-tools++/objects/seqfeat/Genetic_code_.hpp
  2739. include/ncbi-tools++/objects/seqfeat/Genetic_code_table.hpp
  2740. include/ncbi-tools++/objects/seqfeat/Genetic_code_table_.hpp
  2741. include/ncbi-tools++/objects/seqfeat/ISeq_feat.hpp
  2742. include/ncbi-tools++/objects/seqfeat/Imp_feat.hpp
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  2744. include/ncbi-tools++/objects/seqfeat/InferenceSupport.hpp
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  2746. include/ncbi-tools++/objects/seqfeat/ModelEvidenceItem.hpp
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  2748. include/ncbi-tools++/objects/seqfeat/ModelEvidenceSupport.hpp
  2749. include/ncbi-tools++/objects/seqfeat/ModelEvidenceSupport_.hpp
  2750. include/ncbi-tools++/objects/seqfeat/MultiOrgName.hpp
  2751. include/ncbi-tools++/objects/seqfeat/MultiOrgName_.hpp
  2752. include/ncbi-tools++/objects/seqfeat/NCBI_BioSource_module.hpp
  2753. include/ncbi-tools++/objects/seqfeat/NCBI_Gene_module.hpp
  2754. include/ncbi-tools++/objects/seqfeat/NCBI_Organism_module.hpp
  2755. include/ncbi-tools++/objects/seqfeat/NCBI_Protein_module.hpp
  2756. include/ncbi-tools++/objects/seqfeat/NCBI_RNA_module.hpp
  2757. include/ncbi-tools++/objects/seqfeat/NCBI_Rsite_module.hpp
  2758. include/ncbi-tools++/objects/seqfeat/NCBI_Seqfeat_module.hpp
  2759. include/ncbi-tools++/objects/seqfeat/NCBI_TxInit_module.hpp
  2760. include/ncbi-tools++/objects/seqfeat/NCBI_Variation_module.hpp
  2761. include/ncbi-tools++/objects/seqfeat/OrgMod.hpp
  2762. include/ncbi-tools++/objects/seqfeat/OrgMod_.hpp
  2763. include/ncbi-tools++/objects/seqfeat/OrgName.hpp
  2764. include/ncbi-tools++/objects/seqfeat/OrgName_.hpp
  2765. include/ncbi-tools++/objects/seqfeat/Org_ref.hpp
  2766. include/ncbi-tools++/objects/seqfeat/Org_ref_.hpp
  2767. include/ncbi-tools++/objects/seqfeat/PCRPrimer.hpp
  2768. include/ncbi-tools++/objects/seqfeat/PCRPrimerName.hpp
  2769. include/ncbi-tools++/objects/seqfeat/PCRPrimerName_.hpp
  2770. include/ncbi-tools++/objects/seqfeat/PCRPrimerSeq.hpp
  2771. include/ncbi-tools++/objects/seqfeat/PCRPrimerSeq_.hpp
  2772. include/ncbi-tools++/objects/seqfeat/PCRPrimerSet.hpp
  2773. include/ncbi-tools++/objects/seqfeat/PCRPrimerSet_.hpp
  2774. include/ncbi-tools++/objects/seqfeat/PCRPrimer_.hpp
  2775. include/ncbi-tools++/objects/seqfeat/PCRReaction.hpp
  2776. include/ncbi-tools++/objects/seqfeat/PCRReactionSet.hpp
  2777. include/ncbi-tools++/objects/seqfeat/PCRReactionSet_.hpp
  2778. include/ncbi-tools++/objects/seqfeat/PCRReaction_.hpp
  2779. include/ncbi-tools++/objects/seqfeat/PartialOrgName.hpp
  2780. include/ncbi-tools++/objects/seqfeat/PartialOrgName_.hpp
  2781. include/ncbi-tools++/objects/seqfeat/Phenotype.hpp
  2782. include/ncbi-tools++/objects/seqfeat/Phenotype_.hpp
  2783. include/ncbi-tools++/objects/seqfeat/Population_data.hpp
  2784. include/ncbi-tools++/objects/seqfeat/Population_data_.hpp
  2785. include/ncbi-tools++/objects/seqfeat/Program_id.hpp
  2786. include/ncbi-tools++/objects/seqfeat/Program_id_.hpp
  2787. include/ncbi-tools++/objects/seqfeat/Prot_ref.hpp
  2788. include/ncbi-tools++/objects/seqfeat/Prot_ref_.hpp
  2789. include/ncbi-tools++/objects/seqfeat/RNA_gen.hpp
  2790. include/ncbi-tools++/objects/seqfeat/RNA_gen_.hpp
  2791. include/ncbi-tools++/objects/seqfeat/RNA_qual.hpp
  2792. include/ncbi-tools++/objects/seqfeat/RNA_qual_.hpp
  2793. include/ncbi-tools++/objects/seqfeat/RNA_qual_set.hpp
  2794. include/ncbi-tools++/objects/seqfeat/RNA_qual_set_.hpp
  2795. include/ncbi-tools++/objects/seqfeat/RNA_ref.hpp
  2796. include/ncbi-tools++/objects/seqfeat/RNA_ref_.hpp
  2797. include/ncbi-tools++/objects/seqfeat/Rsite_ref.hpp
  2798. include/ncbi-tools++/objects/seqfeat/Rsite_ref_.hpp
  2799. include/ncbi-tools++/objects/seqfeat/SeqFeatData.hpp
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  2801. include/ncbi-tools++/objects/seqfeat/SeqFeatSupport.hpp
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  2803. include/ncbi-tools++/objects/seqfeat/SeqFeatXref.hpp
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  2805. include/ncbi-tools++/objects/seqfeat/Seq_feat.hpp
  2806. include/ncbi-tools++/objects/seqfeat/Seq_feat_.hpp
  2807. include/ncbi-tools++/objects/seqfeat/SubSource.hpp
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  2809. include/ncbi-tools++/objects/seqfeat/TaxElement.hpp
  2810. include/ncbi-tools++/objects/seqfeat/TaxElement_.hpp
  2811. include/ncbi-tools++/objects/seqfeat/Trna_ext.hpp
  2812. include/ncbi-tools++/objects/seqfeat/Trna_ext_.hpp
  2813. include/ncbi-tools++/objects/seqfeat/Tx_evidence.hpp
  2814. include/ncbi-tools++/objects/seqfeat/Tx_evidence_.hpp
  2815. include/ncbi-tools++/objects/seqfeat/Txinit.hpp
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  2817. include/ncbi-tools++/objects/seqfeat/VariantProperties.hpp
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  2819. include/ncbi-tools++/objects/seqfeat/Variation_inst.hpp
  2820. include/ncbi-tools++/objects/seqfeat/Variation_inst_.hpp
  2821. include/ncbi-tools++/objects/seqfeat/Variation_ref.hpp
  2822. include/ncbi-tools++/objects/seqfeat/Variation_ref_.hpp
  2823. include/ncbi-tools++/objects/seqfeat/seqfeat__.hpp
  2824. include/ncbi-tools++/objects/seqfeat/seqfeat_macros.hpp
  2825. include/ncbi-tools++/objects/seqloc/.cvsignore
  2826. include/ncbi-tools++/objects/seqloc/.gitignore
  2827. include/ncbi-tools++/objects/seqloc/Giimport_id.hpp
  2828. include/ncbi-tools++/objects/seqloc/Giimport_id_.hpp
  2829. include/ncbi-tools++/objects/seqloc/NCBI_Seqloc_module.hpp
  2830. include/ncbi-tools++/objects/seqloc/Na_strand.hpp
  2831. include/ncbi-tools++/objects/seqloc/Na_strand_.hpp
  2832. include/ncbi-tools++/objects/seqloc/PDB_mol_id.hpp
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  2834. include/ncbi-tools++/objects/seqloc/PDB_seq_id.hpp
  2835. include/ncbi-tools++/objects/seqloc/PDB_seq_id_.hpp
  2836. include/ncbi-tools++/objects/seqloc/Packed_seqint.hpp
  2837. include/ncbi-tools++/objects/seqloc/Packed_seqint_.hpp
  2838. include/ncbi-tools++/objects/seqloc/Packed_seqpnt.hpp
  2839. include/ncbi-tools++/objects/seqloc/Packed_seqpnt_.hpp
  2840. include/ncbi-tools++/objects/seqloc/Patent_seq_id.hpp
  2841. include/ncbi-tools++/objects/seqloc/Patent_seq_id_.hpp
  2842. include/ncbi-tools++/objects/seqloc/Seq_bond.hpp
  2843. include/ncbi-tools++/objects/seqloc/Seq_bond_.hpp
  2844. include/ncbi-tools++/objects/seqloc/Seq_id.hpp
  2845. include/ncbi-tools++/objects/seqloc/Seq_id_.hpp
  2846. include/ncbi-tools++/objects/seqloc/Seq_id_set.hpp
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  2848. include/ncbi-tools++/objects/seqloc/Seq_interval.hpp
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  2850. include/ncbi-tools++/objects/seqloc/Seq_loc.hpp
  2851. include/ncbi-tools++/objects/seqloc/Seq_loc_.hpp
  2852. include/ncbi-tools++/objects/seqloc/Seq_loc_equiv.hpp
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  2854. include/ncbi-tools++/objects/seqloc/Seq_loc_mix.hpp
  2855. include/ncbi-tools++/objects/seqloc/Seq_loc_mix_.hpp
  2856. include/ncbi-tools++/objects/seqloc/Seq_point.hpp
  2857. include/ncbi-tools++/objects/seqloc/Seq_point_.hpp
  2858. include/ncbi-tools++/objects/seqloc/Textseq_id.hpp
  2859. include/ncbi-tools++/objects/seqloc/Textseq_id_.hpp
  2860. include/ncbi-tools++/objects/seqloc/seqloc__.hpp
  2861. include/ncbi-tools++/objects/seqloc/seqloc_macros.hpp
  2862. include/ncbi-tools++/objects/seqres/.cvsignore
  2863. include/ncbi-tools++/objects/seqres/.gitignore
  2864. include/ncbi-tools++/objects/seqres/Byte_graph.hpp
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  2866. include/ncbi-tools++/objects/seqres/Int_graph.hpp
  2867. include/ncbi-tools++/objects/seqres/Int_graph_.hpp
  2868. include/ncbi-tools++/objects/seqres/NCBI_Seqres_module.hpp
  2869. include/ncbi-tools++/objects/seqres/Real_graph.hpp
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  2871. include/ncbi-tools++/objects/seqres/Seq_graph.hpp
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  2874. include/ncbi-tools++/objects/seqset/.cvsignore
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  2876. include/ncbi-tools++/objects/seqset/Bioseq_set.hpp
  2877. include/ncbi-tools++/objects/seqset/Bioseq_set_.hpp
  2878. include/ncbi-tools++/objects/seqset/NCBI_Seqset_module.hpp
  2879. include/ncbi-tools++/objects/seqset/Seq_entry.hpp
  2880. include/ncbi-tools++/objects/seqset/Seq_entry_.hpp
  2881. include/ncbi-tools++/objects/seqset/gb_release_file.hpp
  2882. include/ncbi-tools++/objects/seqset/seqset__.hpp
  2883. include/ncbi-tools++/objects/seqset/seqset_exception.hpp
  2884. include/ncbi-tools++/objects/seqset/seqset_macros.hpp
  2885. include/ncbi-tools++/objects/seqsplit/.cvsignore
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  2887. include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids.hpp
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  2889. include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Info.hpp
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  2891. include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_place_Info.hpp
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  2893. include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_set_Ids.hpp
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  2895. include/ncbi-tools++/objects/seqsplit/ID2S_Bioseqs_Info.hpp
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  2909. include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Interval.hpp
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  2915. include/ncbi-tools++/objects/seqsplit/ID2S_Interval.hpp
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  2917. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_annot_Info.hpp
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  2925. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_descr_Info.hpp
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  2927. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_feat_Ids_Info.hpp
  2928. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_feat_Ids_Info_.hpp
  2929. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Interval.hpp
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  2931. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Ints.hpp
  2932. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Ints_.hpp
  2933. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_loc.hpp
  2934. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_loc_.hpp
  2935. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_map_Info.hpp
  2936. include/ncbi-tools++/objects/seqsplit/ID2S_Seq_map_Info_.hpp
  2937. include/ncbi-tools++/objects/seqsplit/ID2S_Sequence_Piece.hpp
  2938. include/ncbi-tools++/objects/seqsplit/ID2S_Sequence_Piece_.hpp
  2939. include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info.hpp
  2940. include/ncbi-tools++/objects/seqsplit/ID2S_Split_Info_.hpp
  2941. include/ncbi-tools++/objects/seqsplit/NCBI_Seq_split_module.hpp
  2942. include/ncbi-tools++/objects/seqsplit/seqsplit__.hpp
  2943. include/ncbi-tools++/objects/seqtable/.cvsignore
  2944. include/ncbi-tools++/objects/seqtable/.gitignore
  2945. include/ncbi-tools++/objects/seqtable/BVector_data.hpp
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  2947. include/ncbi-tools++/objects/seqtable/CommonBytes_table.hpp
  2948. include/ncbi-tools++/objects/seqtable/CommonBytes_table_.hpp
  2949. include/ncbi-tools++/objects/seqtable/CommonString_table.hpp
  2950. include/ncbi-tools++/objects/seqtable/CommonString_table_.hpp
  2951. include/ncbi-tools++/objects/seqtable/NCBI_SeqTable_module.hpp
  2952. include/ncbi-tools++/objects/seqtable/Scaled_int_multi_data.hpp
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  2954. include/ncbi-tools++/objects/seqtable/Scaled_real_multi_data.hpp
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  2956. include/ncbi-tools++/objects/seqtable/SeqTable_column.hpp
  2957. include/ncbi-tools++/objects/seqtable/SeqTable_column_.hpp
  2958. include/ncbi-tools++/objects/seqtable/SeqTable_column_info.hpp
  2959. include/ncbi-tools++/objects/seqtable/SeqTable_column_info_.hpp
  2960. include/ncbi-tools++/objects/seqtable/SeqTable_multi_data.hpp
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  2964. include/ncbi-tools++/objects/seqtable/SeqTable_sparse_index.hpp
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  2966. include/ncbi-tools++/objects/seqtable/Seq_table.hpp
  2967. include/ncbi-tools++/objects/seqtable/Seq_table_.hpp
  2968. include/ncbi-tools++/objects/seqtable/impl/delta_cache.hpp
  2969. include/ncbi-tools++/objects/seqtable/seq_table_exception.hpp
  2970. include/ncbi-tools++/objects/seqtable/seqtable__.hpp
  2971. include/ncbi-tools++/objects/seqtest/.cvsignore
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  2973. include/ncbi-tools++/objects/seqtest/NCBI_SeqTest_module.hpp
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  2981. include/ncbi-tools++/objects/submit/.cvsignore
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  2984. include/ncbi-tools++/objects/submit/Contact_info_.hpp
  2985. include/ncbi-tools++/objects/submit/NCBI_Submit_module.hpp
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  2992. include/ncbi-tools++/objects/taxon1/.cvsignore
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  3009. include/ncbi-tools++/objects/taxon1/local_taxon.hpp
  3010. include/ncbi-tools++/objects/taxon1/taxon1.hpp
  3011. include/ncbi-tools++/objects/taxon1/taxon1__.hpp
  3012. include/ncbi-tools++/objects/taxon3/.cvsignore
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  3014. include/ncbi-tools++/objects/taxon3/NCBI_Taxon3_module.hpp
  3015. include/ncbi-tools++/objects/taxon3/SequenceOfInt.hpp
  3016. include/ncbi-tools++/objects/taxon3/SequenceOfInt_.hpp
  3017. include/ncbi-tools++/objects/taxon3/T3Data.hpp
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  3021. include/ncbi-tools++/objects/taxon3/T3RefreshFlags.hpp
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  3023. include/ncbi-tools++/objects/taxon3/T3Reply.hpp
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  3027. include/ncbi-tools++/objects/taxon3/T3StatusFlags.hpp
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  3033. include/ncbi-tools++/objects/taxon3/cached_taxon3.hpp
  3034. include/ncbi-tools++/objects/taxon3/itaxon3.hpp
  3035. include/ncbi-tools++/objects/taxon3/taxon3.hpp
  3036. include/ncbi-tools++/objects/taxon3/taxon3__.hpp
  3037. include/ncbi-tools++/objects/tinyseq/.cvsignore
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  3039. include/ncbi-tools++/objects/tinyseq/NCBI_TSeq_module.hpp
  3040. include/ncbi-tools++/objects/tinyseq/TSeq.hpp
  3041. include/ncbi-tools++/objects/tinyseq/TSeqSet.hpp
  3042. include/ncbi-tools++/objects/tinyseq/TSeqSet_.hpp
  3043. include/ncbi-tools++/objects/tinyseq/TSeq_.hpp
  3044. include/ncbi-tools++/objects/tinyseq/tinyseq__.hpp
  3045. include/ncbi-tools++/objects/trackmgr/.cvsignore
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  3047. include/ncbi-tools++/objects/trackmgr/NCBI_TrackManager_module.hpp
  3048. include/ncbi-tools++/objects/trackmgr/TMgr_ACL_AccessLevel.hpp
  3049. include/ncbi-tools++/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp
  3050. include/ncbi-tools++/objects/trackmgr/TMgr_AnnotCounts.hpp
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  3052. include/ncbi-tools++/objects/trackmgr/TMgr_AnnotType.hpp
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  3054. include/ncbi-tools++/objects/trackmgr/TMgr_Assembly.hpp
  3055. include/ncbi-tools++/objects/trackmgr/TMgr_AssemblySpec.hpp
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  3057. include/ncbi-tools++/objects/trackmgr/TMgr_Assembly_.hpp
  3058. include/ncbi-tools++/objects/trackmgr/TMgr_AttrReply.hpp
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  3064. include/ncbi-tools++/objects/trackmgr/TMgr_AttrValueReply.hpp
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  3068. include/ncbi-tools++/objects/trackmgr/TMgr_BlastQuerySeq.hpp
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  3070. include/ncbi-tools++/objects/trackmgr/TMgr_BlastRIDDetail.hpp
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  3072. include/ncbi-tools++/objects/trackmgr/TMgr_BlastRIDReply.hpp
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  3074. include/ncbi-tools++/objects/trackmgr/TMgr_BlastRIDRequest.hpp
  3075. include/ncbi-tools++/objects/trackmgr/TMgr_BlastRIDRequest_.hpp
  3076. include/ncbi-tools++/objects/trackmgr/TMgr_ClientInfo.hpp
  3077. include/ncbi-tools++/objects/trackmgr/TMgr_ClientInfo_.hpp
  3078. include/ncbi-tools++/objects/trackmgr/TMgr_CreateRemoteTrackRepl.hpp
  3079. include/ncbi-tools++/objects/trackmgr/TMgr_CreateRemoteTrackRepl_.hpp
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  3081. include/ncbi-tools++/objects/trackmgr/TMgr_CreateRemoteTrackRequ_.hpp
  3082. include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetReply.hpp
  3083. include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetReply_.hpp
  3084. include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetRequest.hpp
  3085. include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetRequest_.hpp
  3086. include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserDataItem.hpp
  3087. include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserDataItem_.hpp
  3088. include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReply.hpp
  3089. include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReply_.hpp
  3090. include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReques.hpp
  3091. include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReques_.hpp
  3092. include/ncbi-tools++/objects/trackmgr/TMgr_DHubId.hpp
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  3094. include/ncbi-tools++/objects/trackmgr/TMgr_DTrackId.hpp
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  3096. include/ncbi-tools++/objects/trackmgr/TMgr_DatasetItem.hpp
  3097. include/ncbi-tools++/objects/trackmgr/TMgr_DatasetItemSeq.hpp
  3098. include/ncbi-tools++/objects/trackmgr/TMgr_DatasetItemSeq_.hpp
  3099. include/ncbi-tools++/objects/trackmgr/TMgr_DatasetItem_.hpp
  3100. include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrack.hpp
  3101. include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrackChoice.hpp
  3102. include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrackChoice_.hpp
  3103. include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrackReply.hpp
  3104. include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrackReply_.hpp
  3105. include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrackRequest.hpp
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  3107. include/ncbi-tools++/objects/trackmgr/TMgr_DisplayTrack_.hpp
  3108. include/ncbi-tools++/objects/trackmgr/TMgr_GenomeContext.hpp
  3109. include/ncbi-tools++/objects/trackmgr/TMgr_GenomeContext_.hpp
  3110. include/ncbi-tools++/objects/trackmgr/TMgr_Hub.hpp
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  3112. include/ncbi-tools++/objects/trackmgr/TMgr_HubTrack_.hpp
  3113. include/ncbi-tools++/objects/trackmgr/TMgr_Hub_.hpp
  3114. include/ncbi-tools++/objects/trackmgr/TMgr_Identity.hpp
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  3116. include/ncbi-tools++/objects/trackmgr/TMgr_IdentityIdType.hpp
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  3118. include/ncbi-tools++/objects/trackmgr/TMgr_IdentityId_.hpp
  3119. include/ncbi-tools++/objects/trackmgr/TMgr_Identity_.hpp
  3120. include/ncbi-tools++/objects/trackmgr/TMgr_ItemResolverReply.hpp
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  3122. include/ncbi-tools++/objects/trackmgr/TMgr_ItemResolverRequest.hpp
  3123. include/ncbi-tools++/objects/trackmgr/TMgr_ItemResolverRequest_.hpp
  3124. include/ncbi-tools++/objects/trackmgr/TMgr_LengthStats.hpp
  3125. include/ncbi-tools++/objects/trackmgr/TMgr_LengthStats_.hpp
  3126. include/ncbi-tools++/objects/trackmgr/TMgr_Message.hpp
  3127. include/ncbi-tools++/objects/trackmgr/TMgr_MessageLevel.hpp
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  3129. include/ncbi-tools++/objects/trackmgr/TMgr_Message_.hpp
  3130. include/ncbi-tools++/objects/trackmgr/TMgr_PositionStats.hpp
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  3132. include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReply.hpp
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  3134. include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReques.hpp
  3135. include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReques_.hpp
  3136. include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectio.hpp
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  3138. include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectix.hpp
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  3140. include/ncbi-tools++/objects/trackmgr/TMgr_Reply.hpp
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  3142. include/ncbi-tools++/objects/trackmgr/TMgr_Request.hpp
  3143. include/ncbi-tools++/objects/trackmgr/TMgr_Request_.hpp
  3144. include/ncbi-tools++/objects/trackmgr/TMgr_RetrieveTracksetReply.hpp
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  3146. include/ncbi-tools++/objects/trackmgr/TMgr_RetrieveTracksetReque.hpp
  3147. include/ncbi-tools++/objects/trackmgr/TMgr_RetrieveTracksetReque_.hpp
  3148. include/ncbi-tools++/objects/trackmgr/TMgr_SeqTrackIdReply.hpp
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  3150. include/ncbi-tools++/objects/trackmgr/TMgr_SeqTrackIdRequest.hpp
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  3152. include/ncbi-tools++/objects/trackmgr/TMgr_Status.hpp
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  3154. include/ncbi-tools++/objects/trackmgr/TMgr_SupportedAssembliesRe.hpp
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  3158. include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextRep.hpp
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  3160. include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextReq.hpp
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  3166. include/ncbi-tools++/objects/trackmgr/TMgr_TrackACL_Authorizatio.hpp
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  3169. include/ncbi-tools++/objects/trackmgr/TMgr_TrackACL_Permission_.hpp
  3170. include/ncbi-tools++/objects/trackmgr/TMgr_TrackAttrValueReply.hpp
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  3172. include/ncbi-tools++/objects/trackmgr/TMgr_TrackAttrValueRequest.hpp
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  3174. include/ncbi-tools++/objects/trackmgr/TMgr_TrackAttributes.hpp
  3175. include/ncbi-tools++/objects/trackmgr/TMgr_TrackAttributes_.hpp
  3176. include/ncbi-tools++/objects/trackmgr/TMgr_TrackItems.hpp
  3177. include/ncbi-tools++/objects/trackmgr/TMgr_TrackItems_.hpp
  3178. include/ncbi-tools++/objects/trackmgr/TMgr_TrackSet.hpp
  3179. include/ncbi-tools++/objects/trackmgr/TMgr_TrackSetType.hpp
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  3182. include/ncbi-tools++/objects/trackmgr/TMgr_TypeStat.hpp
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  3184. include/ncbi-tools++/objects/trackmgr/TMgr_TypeTrackType.hpp
  3185. include/ncbi-tools++/objects/trackmgr/TMgr_TypeTrackType_.hpp
  3186. include/ncbi-tools++/objects/trackmgr/TMgr_ValueRequest.hpp
  3187. include/ncbi-tools++/objects/trackmgr/TMgr_ValueRequest_.hpp
  3188. include/ncbi-tools++/objects/trackmgr/blast_client.hpp
  3189. include/ncbi-tools++/objects/trackmgr/createremotetrack_client.hpp
  3190. include/ncbi-tools++/objects/trackmgr/createtrackset_client.hpp
  3191. include/ncbi-tools++/objects/trackmgr/createusertrack_client.hpp
  3192. include/ncbi-tools++/objects/trackmgr/displaytrack_client.hpp
  3193. include/ncbi-tools++/objects/trackmgr/gridrpcclient.hpp
  3194. include/ncbi-tools++/objects/trackmgr/item_resolver_client.hpp
  3195. include/ncbi-tools++/objects/trackmgr/primary_snp.hpp
  3196. include/ncbi-tools++/objects/trackmgr/removeusertrack_client.hpp
  3197. include/ncbi-tools++/objects/trackmgr/supported_assemblies_client.hpp
  3198. include/ncbi-tools++/objects/trackmgr/switch_context_client.hpp
  3199. include/ncbi-tools++/objects/trackmgr/track_attrvalue_client.hpp
  3200. include/ncbi-tools++/objects/trackmgr/trackmgr__.hpp
  3201. include/ncbi-tools++/objects/trackmgr/trackmgr_client.hpp
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  3203. include/ncbi-tools++/objects/trackmgr/trackmgr_export.h
  3204. include/ncbi-tools++/objects/trackmgr/trackset_client.hpp
  3205. include/ncbi-tools++/objects/valerr/.cvsignore
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  3207. include/ncbi-tools++/objects/valerr/NCBI_ValErrors_module.hpp
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  3213. include/ncbi-tools++/objects/valid/.cvsignore
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  3227. include/ncbi-tools++/objects/valid/NCBI_Structured_comment_validation_module.hpp
  3228. include/ncbi-tools++/objects/valid/Phrase_list.hpp
  3229. include/ncbi-tools++/objects/valid/Phrase_list_.hpp
  3230. include/ncbi-tools++/objects/valid/Severity_level.hpp
  3231. include/ncbi-tools++/objects/valid/Severity_level_.hpp
  3232. include/ncbi-tools++/objects/valid/valid__.hpp
  3233. include/ncbi-tools++/objects/variation/.cvsignore
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  3235. include/ncbi-tools++/objects/variation/NCBI_VariationPackage_module.hpp
  3236. include/ncbi-tools++/objects/variation/VariantPlacement.hpp
  3237. include/ncbi-tools++/objects/variation/VariantPlacement_.hpp
  3238. include/ncbi-tools++/objects/variation/Variation.hpp
  3239. include/ncbi-tools++/objects/variation/VariationException.hpp
  3240. include/ncbi-tools++/objects/variation/VariationException_.hpp
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  3245. include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/.cvsignore
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  3249. include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/NCBI_search_by_rsid_module.hpp
  3250. include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/Placement.hpp
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  3252. include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply.hpp
  3253. include/ncbi-tools++/objects/variation_libs/dbsnp/search_by_rsid/SearchByRsIdReply_.hpp
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  3255. include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/.cvsignore
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  3265. include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipServiceReply.hpp
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  3268. include/ncbi-tools++/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.hpp
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  3294. include/ncbi-tools++/objects/varrep/Insertion_.hpp
  3295. include/ncbi-tools++/objects/varrep/Inversion.hpp
  3296. include/ncbi-tools++/objects/varrep/Inversion_.hpp
  3297. include/ncbi-tools++/objects/varrep/NCBI_VariationIRep_module.hpp
  3298. include/ncbi-tools++/objects/varrep/NaIdentity.hpp
  3299. include/ncbi-tools++/objects/varrep/NaIdentity_.hpp
  3300. include/ncbi-tools++/objects/varrep/NaSub.hpp
  3301. include/ncbi-tools++/objects/varrep/NaSub_.hpp
  3302. include/ncbi-tools++/objects/varrep/NtIntLimit.hpp
  3303. include/ncbi-tools++/objects/varrep/NtIntLimit_.hpp
  3304. include/ncbi-tools++/objects/varrep/NtInterval.hpp
  3305. include/ncbi-tools++/objects/varrep/NtInterval_.hpp
  3306. include/ncbi-tools++/objects/varrep/NtLocation.hpp
  3307. include/ncbi-tools++/objects/varrep/NtLocation_.hpp
  3308. include/ncbi-tools++/objects/varrep/NtSite.hpp
  3309. include/ncbi-tools++/objects/varrep/NtSiteRange.hpp
  3310. include/ncbi-tools++/objects/varrep/NtSiteRange_.hpp
  3311. include/ncbi-tools++/objects/varrep/NtSite_.hpp
  3312. include/ncbi-tools++/objects/varrep/NtermExtension.hpp
  3313. include/ncbi-tools++/objects/varrep/NtermExtension_.hpp
  3314. include/ncbi-tools++/objects/varrep/ProteinExtension.hpp
  3315. include/ncbi-tools++/objects/varrep/ProteinExtension_.hpp
  3316. include/ncbi-tools++/objects/varrep/ProteinSub.hpp
  3317. include/ncbi-tools++/objects/varrep/ProteinSub_.hpp
  3318. include/ncbi-tools++/objects/varrep/Repeat.hpp
  3319. include/ncbi-tools++/objects/varrep/Repeat_.hpp
  3320. include/ncbi-tools++/objects/varrep/SeqInterval.hpp
  3321. include/ncbi-tools++/objects/varrep/SeqInterval_.hpp
  3322. include/ncbi-tools++/objects/varrep/SeqLocation.hpp
  3323. include/ncbi-tools++/objects/varrep/SeqLocation_.hpp
  3324. include/ncbi-tools++/objects/varrep/SequenceVariant.hpp
  3325. include/ncbi-tools++/objects/varrep/SequenceVariant_.hpp
  3326. include/ncbi-tools++/objects/varrep/SimpleVariant.hpp
  3327. include/ncbi-tools++/objects/varrep/SimpleVariantSeq.hpp
  3328. include/ncbi-tools++/objects/varrep/SimpleVariantSeq_.hpp
  3329. include/ncbi-tools++/objects/varrep/SimpleVariant_.hpp
  3330. include/ncbi-tools++/objects/varrep/SpecialVariant.hpp
  3331. include/ncbi-tools++/objects/varrep/SpecialVariant_.hpp
  3332. include/ncbi-tools++/objects/varrep/Subsequence.hpp
  3333. include/ncbi-tools++/objects/varrep/Subsequence_.hpp
  3334. include/ncbi-tools++/objects/varrep/Variant.hpp
  3335. include/ncbi-tools++/objects/varrep/VariantExpression.hpp
  3336. include/ncbi-tools++/objects/varrep/VariantExpression_.hpp
  3337. include/ncbi-tools++/objects/varrep/VariantSeqType.hpp
  3338. include/ncbi-tools++/objects/varrep/VariantSeqType_.hpp
  3339. include/ncbi-tools++/objects/varrep/Variant_.hpp
  3340. include/ncbi-tools++/objects/varrep/varrep__.hpp
  3341. include/ncbi-tools++/objmgr/align_ci.hpp
  3342. include/ncbi-tools++/objmgr/annot_ci.hpp
  3343. include/ncbi-tools++/objmgr/annot_name.hpp
  3344. include/ncbi-tools++/objmgr/annot_selector.hpp
  3345. include/ncbi-tools++/objmgr/annot_type_selector.hpp
  3346. include/ncbi-tools++/objmgr/annot_types_ci.hpp
  3347. include/ncbi-tools++/objmgr/bio_object_id.hpp
  3348. include/ncbi-tools++/objmgr/bioseq_ci.hpp
  3349. include/ncbi-tools++/objmgr/bioseq_handle.hpp
  3350. include/ncbi-tools++/objmgr/bioseq_set_handle.hpp
  3351. include/ncbi-tools++/objmgr/blob_id.hpp
  3352. include/ncbi-tools++/objmgr/data_loader.hpp
  3353. include/ncbi-tools++/objmgr/data_loader_factory.hpp
  3354. include/ncbi-tools++/objmgr/edit_saver.hpp
  3355. include/ncbi-tools++/objmgr/edits_db_engine.hpp
  3356. include/ncbi-tools++/objmgr/edits_db_saver.hpp
  3357. include/ncbi-tools++/objmgr/error_codes.hpp
  3358. include/ncbi-tools++/objmgr/feat_ci.hpp
  3359. include/ncbi-tools++/objmgr/gc_assembly_parser.hpp
  3360. include/ncbi-tools++/objmgr/graph_ci.hpp
  3361. include/ncbi-tools++/objmgr/impl/annot_collector.hpp
  3362. include/ncbi-tools++/objmgr/impl/annot_finder.hpp
  3363. include/ncbi-tools++/objmgr/impl/annot_object.hpp
  3364. include/ncbi-tools++/objmgr/impl/annot_object_index.hpp
  3365. include/ncbi-tools++/objmgr/impl/annot_type_index.hpp
  3366. include/ncbi-tools++/objmgr/impl/bioseq_base_info.hpp
  3367. include/ncbi-tools++/objmgr/impl/bioseq_edit_commands.hpp
  3368. include/ncbi-tools++/objmgr/impl/bioseq_info.hpp
  3369. include/ncbi-tools++/objmgr/impl/bioseq_set_edit_commands.hpp
  3370. include/ncbi-tools++/objmgr/impl/bioseq_set_info.hpp
  3371. include/ncbi-tools++/objmgr/impl/data_source.hpp
  3372. include/ncbi-tools++/objmgr/impl/edit_commands_impl.hpp
  3373. include/ncbi-tools++/objmgr/impl/handle_range.hpp
  3374. include/ncbi-tools++/objmgr/impl/handle_range_map.hpp
  3375. include/ncbi-tools++/objmgr/impl/heap_scope.hpp
  3376. include/ncbi-tools++/objmgr/impl/mutex_pool.hpp
  3377. include/ncbi-tools++/objmgr/impl/prefetch_impl.hpp
  3378. include/ncbi-tools++/objmgr/impl/prefetch_manager_impl.hpp
  3379. include/ncbi-tools++/objmgr/impl/priority.hpp
  3380. include/ncbi-tools++/objmgr/impl/scope_impl.hpp
  3381. include/ncbi-tools++/objmgr/impl/scope_info.hpp
  3382. include/ncbi-tools++/objmgr/impl/scope_transaction_impl.hpp
  3383. include/ncbi-tools++/objmgr/impl/seq_align_mapper.hpp
  3384. include/ncbi-tools++/objmgr/impl/seq_annot_edit_commands.hpp
  3385. include/ncbi-tools++/objmgr/impl/seq_annot_info.hpp
  3386. include/ncbi-tools++/objmgr/impl/seq_entry_edit_commands.hpp
  3387. include/ncbi-tools++/objmgr/impl/seq_entry_info.hpp
  3388. include/ncbi-tools++/objmgr/impl/seq_id_sort.hpp
  3389. include/ncbi-tools++/objmgr/impl/seq_loc_cvt.hpp
  3390. include/ncbi-tools++/objmgr/impl/seq_table_info.hpp
  3391. include/ncbi-tools++/objmgr/impl/seq_table_setter.hpp
  3392. include/ncbi-tools++/objmgr/impl/seq_table_setters.hpp
  3393. include/ncbi-tools++/objmgr/impl/seq_vector_cvt.hpp
  3394. include/ncbi-tools++/objmgr/impl/seq_vector_cvt_gcc_i386.hpp
  3395. include/ncbi-tools++/objmgr/impl/seq_vector_cvt_gen.hpp
  3396. include/ncbi-tools++/objmgr/impl/snp_annot_info.hpp
  3397. include/ncbi-tools++/objmgr/impl/snp_info.hpp
  3398. include/ncbi-tools++/objmgr/impl/split_parser.hpp
  3399. include/ncbi-tools++/objmgr/impl/synonyms.hpp
  3400. include/ncbi-tools++/objmgr/impl/tse_assigner.hpp
  3401. include/ncbi-tools++/objmgr/impl/tse_chunk_info.hpp
  3402. include/ncbi-tools++/objmgr/impl/tse_info.hpp
  3403. include/ncbi-tools++/objmgr/impl/tse_info_object.hpp
  3404. include/ncbi-tools++/objmgr/impl/tse_loadlock.hpp
  3405. include/ncbi-tools++/objmgr/impl/tse_lock.hpp
  3406. include/ncbi-tools++/objmgr/impl/tse_scope_lock.hpp
  3407. include/ncbi-tools++/objmgr/impl/tse_split_info.hpp
  3408. include/ncbi-tools++/objmgr/mapped_feat.hpp
  3409. include/ncbi-tools++/objmgr/object_manager.hpp
  3410. include/ncbi-tools++/objmgr/objmgr_exception.hpp
  3411. include/ncbi-tools++/objmgr/objmgr_version.hpp
  3412. include/ncbi-tools++/objmgr/prefetch.hpp
  3413. include/ncbi-tools++/objmgr/prefetch_actions.hpp
  3414. include/ncbi-tools++/objmgr/prefetch_manager.hpp
  3415. include/ncbi-tools++/objmgr/scope.hpp
  3416. include/ncbi-tools++/objmgr/scope_transaction.hpp
  3417. include/ncbi-tools++/objmgr/seq_align_handle.hpp
  3418. include/ncbi-tools++/objmgr/seq_annot_ci.hpp
  3419. include/ncbi-tools++/objmgr/seq_annot_handle.hpp
  3420. include/ncbi-tools++/objmgr/seq_descr_ci.hpp
  3421. include/ncbi-tools++/objmgr/seq_entry_ci.hpp
  3422. include/ncbi-tools++/objmgr/seq_entry_handle.hpp
  3423. include/ncbi-tools++/objmgr/seq_feat_handle.hpp
  3424. include/ncbi-tools++/objmgr/seq_graph_handle.hpp
  3425. include/ncbi-tools++/objmgr/seq_loc_mapper.hpp
  3426. include/ncbi-tools++/objmgr/seq_map.hpp
  3427. include/ncbi-tools++/objmgr/seq_map_ci.hpp
  3428. include/ncbi-tools++/objmgr/seq_map_switch.hpp
  3429. include/ncbi-tools++/objmgr/seq_table_ci.hpp
  3430. include/ncbi-tools++/objmgr/seq_vector.hpp
  3431. include/ncbi-tools++/objmgr/seq_vector_ci.hpp
  3432. include/ncbi-tools++/objmgr/seqdesc_ci.hpp
  3433. include/ncbi-tools++/objmgr/split/annot_piece.hpp
  3434. include/ncbi-tools++/objmgr/split/asn_sizer.hpp
  3435. include/ncbi-tools++/objmgr/split/blob_splitter.hpp
  3436. include/ncbi-tools++/objmgr/split/blob_splitter_impl.hpp
  3437. include/ncbi-tools++/objmgr/split/blob_splitter_params.hpp
  3438. include/ncbi-tools++/objmgr/split/chunk_info.hpp
  3439. include/ncbi-tools++/objmgr/split/id2_compress.hpp
  3440. include/ncbi-tools++/objmgr/split/id_range.hpp
  3441. include/ncbi-tools++/objmgr/split/object_splitinfo.hpp
  3442. include/ncbi-tools++/objmgr/split/place_id.hpp
  3443. include/ncbi-tools++/objmgr/split/size.hpp
  3444. include/ncbi-tools++/objmgr/split/split_blob.hpp
  3445. include/ncbi-tools++/objmgr/split/split_exceptions.hpp
  3446. include/ncbi-tools++/objmgr/table_field.hpp
  3447. include/ncbi-tools++/objmgr/tse_handle.hpp
  3448. include/ncbi-tools++/objmgr/unsupp_editsaver.hpp
  3449. include/ncbi-tools++/objmgr/util/autodef.hpp
  3450. include/ncbi-tools++/objmgr/util/autodef_available_modifier.hpp
  3451. include/ncbi-tools++/objmgr/util/autodef_feature_clause.hpp
  3452. include/ncbi-tools++/objmgr/util/autodef_feature_clause_base.hpp
  3453. include/ncbi-tools++/objmgr/util/autodef_mod_combo.hpp
  3454. include/ncbi-tools++/objmgr/util/autodef_options.hpp
  3455. include/ncbi-tools++/objmgr/util/autodef_source_desc.hpp
  3456. include/ncbi-tools++/objmgr/util/autodef_source_group.hpp
  3457. include/ncbi-tools++/objmgr/util/create_defline.hpp
  3458. include/ncbi-tools++/objmgr/util/feature.hpp
  3459. include/ncbi-tools++/objmgr/util/feature_edit.hpp
  3460. include/ncbi-tools++/objmgr/util/indexer.hpp
  3461. include/ncbi-tools++/objmgr/util/obj_sniff.hpp
  3462. include/ncbi-tools++/objmgr/util/objutil.hpp
  3463. include/ncbi-tools++/objmgr/util/seq_align_util.hpp
  3464. include/ncbi-tools++/objmgr/util/seq_loc_util.hpp
  3465. include/ncbi-tools++/objmgr/util/sequence.hpp
  3466. include/ncbi-tools++/objmgr/util/weight.hpp
  3467. include/ncbi-tools++/objtools/align_format/align_format_util.hpp
  3468. include/ncbi-tools++/objtools/align_format/aln_printer.hpp
  3469. include/ncbi-tools++/objtools/align_format/format_flags.hpp
  3470. include/ncbi-tools++/objtools/align_format/ilinkoutdb.hpp
  3471. include/ncbi-tools++/objtools/align_format/seqalignfilter.hpp
  3472. include/ncbi-tools++/objtools/align_format/showalign.hpp
  3473. include/ncbi-tools++/objtools/align_format/showdefline.hpp
  3474. include/ncbi-tools++/objtools/align_format/tabular.hpp
  3475. include/ncbi-tools++/objtools/align_format/taxFormat.hpp
  3476. include/ncbi-tools++/objtools/align_format/vectorscreen.hpp
  3477. include/ncbi-tools++/objtools/alnmgr/aln_asn_reader.hpp
  3478. include/ncbi-tools++/objtools/alnmgr/aln_builders.hpp
  3479. include/ncbi-tools++/objtools/alnmgr/aln_container.hpp
  3480. include/ncbi-tools++/objtools/alnmgr/aln_converters.hpp
  3481. include/ncbi-tools++/objtools/alnmgr/aln_explorer.hpp
  3482. include/ncbi-tools++/objtools/alnmgr/aln_generators.hpp
  3483. include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_oper.hpp
  3484. include/ncbi-tools++/objtools/alnmgr/aln_seqid.hpp
  3485. include/ncbi-tools++/objtools/alnmgr/aln_serial.hpp
  3486. include/ncbi-tools++/objtools/alnmgr/aln_stats.hpp
  3487. include/ncbi-tools++/objtools/alnmgr/aln_tests.hpp
  3488. include/ncbi-tools++/objtools/alnmgr/aln_user_options.hpp
  3489. include/ncbi-tools++/objtools/alnmgr/alndiag.hpp
  3490. include/ncbi-tools++/objtools/alnmgr/alnexception.hpp
  3491. include/ncbi-tools++/objtools/alnmgr/alnmap.hpp
  3492. include/ncbi-tools++/objtools/alnmgr/alnmatch.hpp
  3493. include/ncbi-tools++/objtools/alnmgr/alnmerger.hpp
  3494. include/ncbi-tools++/objtools/alnmgr/alnmix.hpp
  3495. include/ncbi-tools++/objtools/alnmgr/alnpos_ci.hpp
  3496. include/ncbi-tools++/objtools/alnmgr/alnsegments.hpp
  3497. include/ncbi-tools++/objtools/alnmgr/alnseq.hpp
  3498. include/ncbi-tools++/objtools/alnmgr/alntext.hpp
  3499. include/ncbi-tools++/objtools/alnmgr/alnvec.hpp
  3500. include/ncbi-tools++/objtools/alnmgr/alnvec_iterator.hpp
  3501. include/ncbi-tools++/objtools/alnmgr/pairwise_aln.hpp
  3502. include/ncbi-tools++/objtools/alnmgr/score_builder_base.hpp
  3503. include/ncbi-tools++/objtools/alnmgr/seqid_comp.hpp
  3504. include/ncbi-tools++/objtools/alnmgr/seqids_extractor.hpp
  3505. include/ncbi-tools++/objtools/alnmgr/sparse_aln.hpp
  3506. include/ncbi-tools++/objtools/alnmgr/sparse_ci.hpp
  3507. include/ncbi-tools++/objtools/alnmgr/task_progress.hpp
  3508. include/ncbi-tools++/objtools/blast/blastdb_format/blastdb_dataextract.hpp
  3509. include/ncbi-tools++/objtools/blast/blastdb_format/blastdb_formatter.hpp
  3510. include/ncbi-tools++/objtools/blast/blastdb_format/blastdb_seqid.hpp
  3511. include/ncbi-tools++/objtools/blast/blastdb_format/invalid_data_exception.hpp
  3512. include/ncbi-tools++/objtools/blast/blastdb_format/seq_formatter.hpp
  3513. include/ncbi-tools++/objtools/blast/blastdb_format/seq_writer.hpp
  3514. include/ncbi-tools++/objtools/blast/gene_info_reader/file_utils.hpp
  3515. include/ncbi-tools++/objtools/blast/gene_info_reader/gene_info.hpp
  3516. include/ncbi-tools++/objtools/blast/gene_info_reader/gene_info_reader.hpp
  3517. include/ncbi-tools++/objtools/blast/seqdb_reader/column_reader.hpp
  3518. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/lmdb++.h
  3519. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp
  3520. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp
  3521. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbcol.hpp
  3522. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbfile.hpp
  3523. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp
  3524. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbisam.hpp
  3525. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbtax.hpp
  3526. include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbvol.hpp
  3527. include/ncbi-tools++/objtools/blast/seqdb_reader/seqdb.hpp
  3528. include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbblob.hpp
  3529. include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbcommon.hpp
  3530. include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbexpert.hpp
  3531. include/ncbi-tools++/objtools/blast/seqdb_reader/seqidlist_reader.hpp
  3532. include/ncbi-tools++/objtools/blast/seqdb_writer/build_db.hpp
  3533. include/ncbi-tools++/objtools/blast/seqdb_writer/impl/criteria.hpp
  3534. include/ncbi-tools++/objtools/blast/seqdb_writer/multisource_util.hpp
  3535. include/ncbi-tools++/objtools/blast/seqdb_writer/seqidlist_writer.hpp
  3536. include/ncbi-tools++/objtools/blast/seqdb_writer/taxid_set.hpp
  3537. include/ncbi-tools++/objtools/blast/seqdb_writer/writedb.hpp
  3538. include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_convert.hpp
  3539. include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_error.hpp
  3540. include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_files.hpp
  3541. include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp
  3542. include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp
  3543. include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_lmdb.hpp
  3544. include/ncbi-tools++/objtools/blast/services/blast_services.hpp
  3545. include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp
  3546. include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp
  3547. include/ncbi-tools++/objtools/cleanup/cleanup.hpp
  3548. include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp
  3549. include/ncbi-tools++/objtools/cleanup/cleanup_pub.hpp
  3550. include/ncbi-tools++/objtools/cleanup/fix_feature_id.hpp
  3551. include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp
  3552. include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp
  3553. include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp
  3554. include/ncbi-tools++/objtools/data_loaders/genbank/blob_id.hpp
  3555. include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache.hpp
  3556. include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp
  3557. include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_params.h
  3558. include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache.hpp
  3559. include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp
  3560. include/ncbi-tools++/objtools/data_loaders/genbank/gbloader.hpp
  3561. include/ncbi-tools++/objtools/data_loaders/genbank/gbloader_params.h
  3562. include/ncbi-tools++/objtools/data_loaders/genbank/gbnative.hpp
  3563. include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache.hpp
  3564. include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp
  3565. include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_params.h
  3566. include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1.hpp
  3567. include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp
  3568. include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_params.h
  3569. include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2.hpp
  3570. include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp
  3571. include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_params.h
  3572. include/ncbi-tools++/objtools/data_loaders/genbank/impl/cache_manager.hpp
  3573. include/ncbi-tools++/objtools/data_loaders/genbank/impl/dispatcher.hpp
  3574. include/ncbi-tools++/objtools/data_loaders/genbank/impl/gbload_util.hpp
  3575. include/ncbi-tools++/objtools/data_loaders/genbank/impl/incr_time.hpp
  3576. include/ncbi-tools++/objtools/data_loaders/genbank/impl/info_cache.hpp
  3577. include/ncbi-tools++/objtools/data_loaders/genbank/impl/processor.hpp
  3578. include/ncbi-tools++/objtools/data_loaders/genbank/impl/processors.hpp
  3579. include/ncbi-tools++/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp
  3580. include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id1_base.hpp
  3581. include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id2_base.hpp
  3582. include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_service.hpp
  3583. include/ncbi-tools++/objtools/data_loaders/genbank/impl/request_result.hpp
  3584. include/ncbi-tools++/objtools/data_loaders/genbank/impl/standalone_result.hpp
  3585. include/ncbi-tools++/objtools/data_loaders/genbank/impl/statistics.hpp
  3586. include/ncbi-tools++/objtools/data_loaders/genbank/psg_loader.hpp
  3587. include/ncbi-tools++/objtools/data_loaders/genbank/reader.hpp
  3588. include/ncbi-tools++/objtools/data_loaders/genbank/reader_interface.hpp
  3589. include/ncbi-tools++/objtools/data_loaders/genbank/reader_params.h
  3590. include/ncbi-tools++/objtools/data_loaders/genbank/reader_service_params.h
  3591. include/ncbi-tools++/objtools/data_loaders/genbank/reader_snp.hpp
  3592. include/ncbi-tools++/objtools/data_loaders/genbank/readers.hpp
  3593. include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp
  3594. include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp
  3595. include/ncbi-tools++/objtools/data_loaders/genbank/readers/id1/reader_id1.hpp
  3596. include/ncbi-tools++/objtools/data_loaders/genbank/readers/id2/reader_id2.hpp
  3597. include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos/reader_pubseq.hpp
  3598. include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp
  3599. include/ncbi-tools++/objtools/data_loaders/genbank/seqref.hpp
  3600. include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp
  3601. include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp
  3602. include/ncbi-tools++/objtools/data_loaders/loaders.hpp
  3603. include/ncbi-tools++/objtools/edit/apply_object.hpp
  3604. include/ncbi-tools++/objtools/edit/autodef.hpp
  3605. include/ncbi-tools++/objtools/edit/autodef_options.hpp
  3606. include/ncbi-tools++/objtools/edit/autodef_source_desc.hpp
  3607. include/ncbi-tools++/objtools/edit/autodef_with_tax.hpp
  3608. include/ncbi-tools++/objtools/edit/capitalization_string.hpp
  3609. include/ncbi-tools++/objtools/edit/cds_fix.hpp
  3610. include/ncbi-tools++/objtools/edit/dblink_field.hpp
  3611. include/ncbi-tools++/objtools/edit/edit_error.hpp
  3612. include/ncbi-tools++/objtools/edit/edit_exception.hpp
  3613. include/ncbi-tools++/objtools/edit/external_annots.hpp
  3614. include/ncbi-tools++/objtools/edit/feattable_edit.hpp
  3615. include/ncbi-tools++/objtools/edit/feature_propagate.hpp
  3616. include/ncbi-tools++/objtools/edit/field_handler.hpp
  3617. include/ncbi-tools++/objtools/edit/gap_trim.hpp
  3618. include/ncbi-tools++/objtools/edit/gaps_edit.hpp
  3619. include/ncbi-tools++/objtools/edit/gb_block_field.hpp
  3620. include/ncbi-tools++/objtools/edit/gene_utils.hpp
  3621. include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp
  3622. include/ncbi-tools++/objtools/edit/loc_edit.hpp
  3623. include/ncbi-tools++/objtools/edit/mail_report.hpp
  3624. include/ncbi-tools++/objtools/edit/parse_text_options.hpp
  3625. include/ncbi-tools++/objtools/edit/promote.hpp
  3626. include/ncbi-tools++/objtools/edit/publication_edit.hpp
  3627. include/ncbi-tools++/objtools/edit/remote_updater.hpp
  3628. include/ncbi-tools++/objtools/edit/rna_edit.hpp
  3629. include/ncbi-tools++/objtools/edit/seq_edit.hpp
  3630. include/ncbi-tools++/objtools/edit/seq_entry_edit.hpp
  3631. include/ncbi-tools++/objtools/edit/seqid_guesser.hpp
  3632. include/ncbi-tools++/objtools/edit/source_edit.hpp
  3633. include/ncbi-tools++/objtools/edit/string_constraint.hpp
  3634. include/ncbi-tools++/objtools/edit/struc_comm_field.hpp
  3635. include/ncbi-tools++/objtools/edit/text_desc_field.hpp
  3636. include/ncbi-tools++/objtools/edit/text_object_description.hpp
  3637. include/ncbi-tools++/objtools/error_codes.hpp
  3638. include/ncbi-tools++/objtools/format/cigar_formatter.hpp
  3639. include/ncbi-tools++/objtools/format/context.hpp
  3640. include/ncbi-tools++/objtools/format/embl_formatter.hpp
  3641. include/ncbi-tools++/objtools/format/embl_gather.hpp
  3642. include/ncbi-tools++/objtools/format/feature_gather.hpp
  3643. include/ncbi-tools++/objtools/format/flat_expt.hpp
  3644. include/ncbi-tools++/objtools/format/flat_file_config.hpp
  3645. include/ncbi-tools++/objtools/format/flat_file_generator.hpp
  3646. include/ncbi-tools++/objtools/format/format_item_ostream.hpp
  3647. include/ncbi-tools++/objtools/format/formatter.hpp
  3648. include/ncbi-tools++/objtools/format/ftable_formatter.hpp
  3649. include/ncbi-tools++/objtools/format/ftable_gather.hpp
  3650. include/ncbi-tools++/objtools/format/gather_items.hpp
  3651. include/ncbi-tools++/objtools/format/gather_iter.hpp
  3652. include/ncbi-tools++/objtools/format/gbseq_formatter.hpp
  3653. include/ncbi-tools++/objtools/format/genbank_formatter.hpp
  3654. include/ncbi-tools++/objtools/format/genbank_gather.hpp
  3655. include/ncbi-tools++/objtools/format/item_formatter.hpp
  3656. include/ncbi-tools++/objtools/format/item_ostream.hpp
  3657. include/ncbi-tools++/objtools/format/items/accession_item.hpp
  3658. include/ncbi-tools++/objtools/format/items/alignment_item.hpp
  3659. include/ncbi-tools++/objtools/format/items/basecount_item.hpp
  3660. include/ncbi-tools++/objtools/format/items/comment_item.hpp
  3661. include/ncbi-tools++/objtools/format/items/contig_item.hpp
  3662. include/ncbi-tools++/objtools/format/items/ctrl_items.hpp
  3663. include/ncbi-tools++/objtools/format/items/date_item.hpp
  3664. include/ncbi-tools++/objtools/format/items/dbsource_item.hpp
  3665. include/ncbi-tools++/objtools/format/items/defline_item.hpp
  3666. include/ncbi-tools++/objtools/format/items/feature_item.hpp
  3667. include/ncbi-tools++/objtools/format/items/flat_qual_slots.hpp
  3668. include/ncbi-tools++/objtools/format/items/flat_seqloc.hpp
  3669. include/ncbi-tools++/objtools/format/items/gap_item.hpp
  3670. include/ncbi-tools++/objtools/format/items/gene_finder.hpp
  3671. include/ncbi-tools++/objtools/format/items/genome_item.hpp
  3672. include/ncbi-tools++/objtools/format/items/genome_project_item.hpp
  3673. include/ncbi-tools++/objtools/format/items/html_anchor_item.hpp
  3674. include/ncbi-tools++/objtools/format/items/item.hpp
  3675. include/ncbi-tools++/objtools/format/items/item_base.hpp
  3676. include/ncbi-tools++/objtools/format/items/keywords_item.hpp
  3677. include/ncbi-tools++/objtools/format/items/locus_item.hpp
  3678. include/ncbi-tools++/objtools/format/items/origin_item.hpp
  3679. include/ncbi-tools++/objtools/format/items/primary_item.hpp
  3680. include/ncbi-tools++/objtools/format/items/qualifiers.hpp
  3681. include/ncbi-tools++/objtools/format/items/reference_item.hpp
  3682. include/ncbi-tools++/objtools/format/items/segment_item.hpp
  3683. include/ncbi-tools++/objtools/format/items/sequence_item.hpp
  3684. include/ncbi-tools++/objtools/format/items/source_item.hpp
  3685. include/ncbi-tools++/objtools/format/items/tsa_item.hpp
  3686. include/ncbi-tools++/objtools/format/items/version_item.hpp
  3687. include/ncbi-tools++/objtools/format/items/wgs_item.hpp
  3688. include/ncbi-tools++/objtools/format/ostream_text_ostream.hpp
  3689. include/ncbi-tools++/objtools/format/sam_formatter.hpp
  3690. include/ncbi-tools++/objtools/format/text_ostream.hpp
  3691. include/ncbi-tools++/objtools/logging/listener.hpp
  3692. include/ncbi-tools++/objtools/logging/message.hpp
  3693. include/ncbi-tools++/objtools/pubseq_gateway/client/psg_client.hpp
  3694. include/ncbi-tools++/objtools/readers/agp_converter.hpp
  3695. include/ncbi-tools++/objtools/readers/agp_read.hpp
  3696. include/ncbi-tools++/objtools/readers/agp_seq_entry.hpp
  3697. include/ncbi-tools++/objtools/readers/agp_util.hpp
  3698. include/ncbi-tools++/objtools/readers/agp_validate_reader.hpp
  3699. include/ncbi-tools++/objtools/readers/aln_error_reporter.hpp
  3700. include/ncbi-tools++/objtools/readers/aln_formats.hpp
  3701. include/ncbi-tools++/objtools/readers/aln_reader.hpp
  3702. include/ncbi-tools++/objtools/readers/alnread.hpp
  3703. include/ncbi-tools++/objtools/readers/bed_reader.hpp
  3704. include/ncbi-tools++/objtools/readers/cigar.hpp
  3705. include/ncbi-tools++/objtools/readers/error_container.hpp
  3706. include/ncbi-tools++/objtools/readers/fasta.hpp
  3707. include/ncbi-tools++/objtools/readers/fasta_exception.hpp
  3708. include/ncbi-tools++/objtools/readers/fasta_reader_utils.hpp
  3709. include/ncbi-tools++/objtools/readers/featuredump.hpp
  3710. include/ncbi-tools++/objtools/readers/format_guess_ex.hpp
  3711. include/ncbi-tools++/objtools/readers/getfeature.hpp
  3712. include/ncbi-tools++/objtools/readers/gff2_data.hpp
  3713. include/ncbi-tools++/objtools/readers/gff2_reader.hpp
  3714. include/ncbi-tools++/objtools/readers/gff3_reader.hpp
  3715. include/ncbi-tools++/objtools/readers/gff3_sofa.hpp
  3716. include/ncbi-tools++/objtools/readers/gff_base_columns.hpp
  3717. include/ncbi-tools++/objtools/readers/gff_reader.hpp
  3718. include/ncbi-tools++/objtools/readers/glimmer_reader.hpp
  3719. include/ncbi-tools++/objtools/readers/gtf_reader.hpp
  3720. include/ncbi-tools++/objtools/readers/gvf_reader.hpp
  3721. include/ncbi-tools++/objtools/readers/idmapper.hpp
  3722. include/ncbi-tools++/objtools/readers/iidmapper.hpp
  3723. include/ncbi-tools++/objtools/readers/line_error.hpp
  3724. include/ncbi-tools++/objtools/readers/message_listener.hpp
  3725. include/ncbi-tools++/objtools/readers/microarray_reader.hpp
  3726. include/ncbi-tools++/objtools/readers/mod_error.hpp
  3727. include/ncbi-tools++/objtools/readers/mod_reader.hpp
  3728. include/ncbi-tools++/objtools/readers/phrap.hpp
  3729. include/ncbi-tools++/objtools/readers/read_util.hpp
  3730. include/ncbi-tools++/objtools/readers/reader_base.hpp
  3731. include/ncbi-tools++/objtools/readers/reader_error_codes.hpp
  3732. include/ncbi-tools++/objtools/readers/reader_exception.hpp
  3733. include/ncbi-tools++/objtools/readers/reader_idgen.hpp
  3734. include/ncbi-tools++/objtools/readers/readfeat.hpp
  3735. include/ncbi-tools++/objtools/readers/rm_reader.hpp
  3736. include/ncbi-tools++/objtools/readers/source_mod_parser.hpp
  3737. include/ncbi-tools++/objtools/readers/source_mod_parser_wrapper.hpp
  3738. include/ncbi-tools++/objtools/readers/struct_cmt_reader.hpp
  3739. include/ncbi-tools++/objtools/readers/table_filter.hpp
  3740. include/ncbi-tools++/objtools/readers/track_data.hpp
  3741. include/ncbi-tools++/objtools/readers/ucscregion_reader.hpp
  3742. include/ncbi-tools++/objtools/readers/vcf_reader.hpp
  3743. include/ncbi-tools++/objtools/readers/wiggle_reader.hpp
  3744. include/ncbi-tools++/objtools/seqmasks_io/mask_bdb_reader.hpp
  3745. include/ncbi-tools++/objtools/seqmasks_io/mask_cmdline_args.hpp
  3746. include/ncbi-tools++/objtools/seqmasks_io/mask_fasta_reader.hpp
  3747. include/ncbi-tools++/objtools/seqmasks_io/mask_reader.hpp
  3748. include/ncbi-tools++/objtools/seqmasks_io/mask_writer.hpp
  3749. include/ncbi-tools++/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp
  3750. include/ncbi-tools++/objtools/seqmasks_io/mask_writer_fasta.hpp
  3751. include/ncbi-tools++/objtools/seqmasks_io/mask_writer_int.hpp
  3752. include/ncbi-tools++/objtools/seqmasks_io/mask_writer_seqloc.hpp
  3753. include/ncbi-tools++/objtools/seqmasks_io/mask_writer_tab.hpp
  3754. include/ncbi-tools++/objtools/simple/simple_om.hpp
  3755. include/ncbi-tools++/serial/delaybuf.hpp
  3756. include/ncbi-tools++/serial/enumvalues.hpp
  3757. include/ncbi-tools++/serial/error_codes.hpp
  3758. include/ncbi-tools++/serial/exception.hpp
  3759. include/ncbi-tools++/serial/impl/aliasinfo.hpp
  3760. include/ncbi-tools++/serial/impl/asntypes.hpp
  3761. include/ncbi-tools++/serial/impl/autoptrinfo.hpp
  3762. include/ncbi-tools++/serial/impl/choice.hpp
  3763. include/ncbi-tools++/serial/impl/choice.inl
  3764. include/ncbi-tools++/serial/impl/choiceptr.hpp
  3765. include/ncbi-tools++/serial/impl/classinfo.hpp
  3766. include/ncbi-tools++/serial/impl/classinfo.inl
  3767. include/ncbi-tools++/serial/impl/classinfob.hpp
  3768. include/ncbi-tools++/serial/impl/classinfob.inl
  3769. include/ncbi-tools++/serial/impl/classinfohelper.hpp
  3770. include/ncbi-tools++/serial/impl/continfo.hpp
  3771. include/ncbi-tools++/serial/impl/continfo.inl
  3772. include/ncbi-tools++/serial/impl/enumerated.hpp
  3773. include/ncbi-tools++/serial/impl/hookdata.hpp
  3774. include/ncbi-tools++/serial/impl/hookdatakey.hpp
  3775. include/ncbi-tools++/serial/impl/hookfunc.hpp
  3776. include/ncbi-tools++/serial/impl/item.hpp
  3777. include/ncbi-tools++/serial/impl/item.inl
  3778. include/ncbi-tools++/serial/impl/member.hpp
  3779. include/ncbi-tools++/serial/impl/member.inl
  3780. include/ncbi-tools++/serial/impl/memberid.hpp
  3781. include/ncbi-tools++/serial/impl/memberid.inl
  3782. include/ncbi-tools++/serial/impl/memberlist.hpp
  3783. include/ncbi-tools++/serial/impl/memberlist.inl
  3784. include/ncbi-tools++/serial/impl/objcopy.inl
  3785. include/ncbi-tools++/serial/impl/objectinfo.inl
  3786. include/ncbi-tools++/serial/impl/objectio.inl
  3787. include/ncbi-tools++/serial/impl/objectiter.inl
  3788. include/ncbi-tools++/serial/impl/objecttype.hpp
  3789. include/ncbi-tools++/serial/impl/objistr.inl
  3790. include/ncbi-tools++/serial/impl/objistrasnb.inl
  3791. include/ncbi-tools++/serial/impl/objistrimpl.hpp
  3792. include/ncbi-tools++/serial/impl/objistrxml.inl
  3793. include/ncbi-tools++/serial/impl/objlist.hpp
  3794. include/ncbi-tools++/serial/impl/objlist.inl
  3795. include/ncbi-tools++/serial/impl/objostr.inl
  3796. include/ncbi-tools++/serial/impl/objostrxml.inl
  3797. include/ncbi-tools++/serial/impl/objstack.hpp
  3798. include/ncbi-tools++/serial/impl/objstack.inl
  3799. include/ncbi-tools++/serial/impl/objstrasnb.hpp
  3800. include/ncbi-tools++/serial/impl/objstrasnb.inl
  3801. include/ncbi-tools++/serial/impl/pathhook.hpp
  3802. include/ncbi-tools++/serial/impl/ptrinfo.hpp
  3803. include/ncbi-tools++/serial/impl/ptrinfo.inl
  3804. include/ncbi-tools++/serial/impl/serialasndef.hpp
  3805. include/ncbi-tools++/serial/impl/stdtypeinfo.hpp
  3806. include/ncbi-tools++/serial/impl/stdtypes.hpp
  3807. include/ncbi-tools++/serial/impl/stdtypes.inl
  3808. include/ncbi-tools++/serial/impl/stdtypesimpl.hpp
  3809. include/ncbi-tools++/serial/impl/stltypes.hpp
  3810. include/ncbi-tools++/serial/impl/stltypesimpl.hpp
  3811. include/ncbi-tools++/serial/impl/timetypeinfo.hpp
  3812. include/ncbi-tools++/serial/impl/typeinfo.inl
  3813. include/ncbi-tools++/serial/impl/typeinfoimpl.hpp
  3814. include/ncbi-tools++/serial/impl/typemap.hpp
  3815. include/ncbi-tools++/serial/impl/typemapimpl.hpp
  3816. include/ncbi-tools++/serial/impl/typeref.hpp
  3817. include/ncbi-tools++/serial/impl/typeref.inl
  3818. include/ncbi-tools++/serial/impl/variant.hpp
  3819. include/ncbi-tools++/serial/impl/variant.inl
  3820. include/ncbi-tools++/serial/iterator.hpp
  3821. include/ncbi-tools++/serial/objcopy.hpp
  3822. include/ncbi-tools++/serial/objectinfo.hpp
  3823. include/ncbi-tools++/serial/objectio.hpp
  3824. include/ncbi-tools++/serial/objectiter.hpp
  3825. include/ncbi-tools++/serial/objhook.hpp
  3826. include/ncbi-tools++/serial/objistr.hpp
  3827. include/ncbi-tools++/serial/objistrasn.hpp
  3828. include/ncbi-tools++/serial/objistrasnb.hpp
  3829. include/ncbi-tools++/serial/objistrjson.hpp
  3830. include/ncbi-tools++/serial/objistrxml.hpp
  3831. include/ncbi-tools++/serial/objostr.hpp
  3832. include/ncbi-tools++/serial/objostrasn.hpp
  3833. include/ncbi-tools++/serial/objostrasnb.hpp
  3834. include/ncbi-tools++/serial/objostrjson.hpp
  3835. include/ncbi-tools++/serial/objostrxml.hpp
  3836. include/ncbi-tools++/serial/pack_string.hpp
  3837. include/ncbi-tools++/serial/rpcbase.hpp
  3838. include/ncbi-tools++/serial/rpcbase_impl.hpp
  3839. include/ncbi-tools++/serial/serial.hpp
  3840. include/ncbi-tools++/serial/serialasn.hpp
  3841. include/ncbi-tools++/serial/serialbase.hpp
  3842. include/ncbi-tools++/serial/serialdef.hpp
  3843. include/ncbi-tools++/serial/serialimpl.hpp
  3844. include/ncbi-tools++/serial/serializable.hpp
  3845. include/ncbi-tools++/serial/serialutil.hpp
  3846. include/ncbi-tools++/serial/streamiter.hpp
  3847. include/ncbi-tools++/serial/typeinfo.hpp
  3848. include/ncbi-tools++/util/align_range.hpp
  3849. include/ncbi-tools++/util/align_range_coll.hpp
  3850. include/ncbi-tools++/util/align_range_oper.hpp
  3851. include/ncbi-tools++/util/arg_regexp.hpp
  3852. include/ncbi-tools++/util/ascii85.hpp
  3853. include/ncbi-tools++/util/bitset/bitset_debug.hpp
  3854. include/ncbi-tools++/util/bitset/bitset_pool.hpp
  3855. include/ncbi-tools++/util/bitset/bm.h
  3856. include/ncbi-tools++/util/bitset/bm64.h
  3857. include/ncbi-tools++/util/bitset/bmaggregator.h
  3858. include/ncbi-tools++/util/bitset/bmalgo.h
  3859. include/ncbi-tools++/util/bitset/bmalgo_impl.h
  3860. include/ncbi-tools++/util/bitset/bmalgo_similarity.h
  3861. include/ncbi-tools++/util/bitset/bmalloc.h
  3862. include/ncbi-tools++/util/bitset/bmavx2.h
  3863. include/ncbi-tools++/util/bitset/bmavx512.h
  3864. include/ncbi-tools++/util/bitset/bmblocks.h
  3865. include/ncbi-tools++/util/bitset/bmbmatrix.h
  3866. include/ncbi-tools++/util/bitset/bmbmi1.h
  3867. include/ncbi-tools++/util/bitset/bmbmi2.h
  3868. include/ncbi-tools++/util/bitset/bmbuffer.h
  3869. include/ncbi-tools++/util/bitset/bmconst.h
  3870. include/ncbi-tools++/util/bitset/bmdbg.h
  3871. include/ncbi-tools++/util/bitset/bmdef.h
  3872. include/ncbi-tools++/util/bitset/bmfunc.h
  3873. include/ncbi-tools++/util/bitset/bmfwd.h
  3874. include/ncbi-tools++/util/bitset/bmgamma.h
  3875. include/ncbi-tools++/util/bitset/bmrandom.h
  3876. include/ncbi-tools++/util/bitset/bmrs.h
  3877. include/ncbi-tools++/util/bitset/bmserial.h
  3878. include/ncbi-tools++/util/bitset/bmsimd.h
  3879. include/ncbi-tools++/util/bitset/bmsparsevec.h
  3880. include/ncbi-tools++/util/bitset/bmsparsevec_algo.h
  3881. include/ncbi-tools++/util/bitset/bmsparsevec_compr.h
  3882. include/ncbi-tools++/util/bitset/bmsparsevec_serial.h
  3883. include/ncbi-tools++/util/bitset/bmsparsevec_util.h
  3884. include/ncbi-tools++/util/bitset/bmsse2.h
  3885. include/ncbi-tools++/util/bitset/bmsse4.h
  3886. include/ncbi-tools++/util/bitset/bmsse_util.h
  3887. include/ncbi-tools++/util/bitset/bmstrsparsevec.h
  3888. include/ncbi-tools++/util/bitset/bmtimer.h
  3889. include/ncbi-tools++/util/bitset/bmtrans.h
  3890. include/ncbi-tools++/util/bitset/bmundef.h
  3891. include/ncbi-tools++/util/bitset/bmutil.h
  3892. include/ncbi-tools++/util/bitset/bmvmin.h
  3893. include/ncbi-tools++/util/bitset/encoding.h
  3894. include/ncbi-tools++/util/bitset/license.txt
  3895. include/ncbi-tools++/util/bitset/ncbi_bitset.hpp
  3896. include/ncbi-tools++/util/bitset/ncbi_bitset_alloc.hpp
  3897. include/ncbi-tools++/util/bitset/ncbi_bitset_util.hpp
  3898. include/ncbi-tools++/util/bitset/readme
  3899. include/ncbi-tools++/util/buffer_writer.hpp
  3900. include/ncbi-tools++/util/bytesrc.hpp
  3901. include/ncbi-tools++/util/cache/cache_async.hpp
  3902. include/ncbi-tools++/util/cache/cache_ref.hpp
  3903. include/ncbi-tools++/util/cache/icache.hpp
  3904. include/ncbi-tools++/util/cache/icache_cf.hpp
  3905. include/ncbi-tools++/util/cache/icache_clean_thread.hpp
  3906. include/ncbi-tools++/util/checksum.hpp
  3907. include/ncbi-tools++/util/compile_time.hpp
  3908. include/ncbi-tools++/util/compress/archive.hpp
  3909. include/ncbi-tools++/util/compress/archive_.hpp
  3910. include/ncbi-tools++/util/compress/bzip2.hpp
  3911. include/ncbi-tools++/util/compress/bzip2/bzlib.h
  3912. include/ncbi-tools++/util/compress/compress.hpp
  3913. include/ncbi-tools++/util/compress/lzo.hpp
  3914. include/ncbi-tools++/util/compress/reader_zlib.hpp
  3915. include/ncbi-tools++/util/compress/stream.hpp
  3916. include/ncbi-tools++/util/compress/stream_util.hpp
  3917. include/ncbi-tools++/util/compress/tar.hpp
  3918. include/ncbi-tools++/util/compress/zlib.hpp
  3919. include/ncbi-tools++/util/compress/zlib/zconf.h
  3920. include/ncbi-tools++/util/compress/zlib/zlib.h
  3921. include/ncbi-tools++/util/compress/zlib/zutil.h
  3922. include/ncbi-tools++/util/creaders/alnread.h
  3923. include/ncbi-tools++/util/creaders/creaders_export.h
  3924. include/ncbi-tools++/util/data_histogram.hpp
  3925. include/ncbi-tools++/util/ddump_viewer.hpp
  3926. include/ncbi-tools++/util/dictionary.hpp
  3927. include/ncbi-tools++/util/dictionary_util.hpp
  3928. include/ncbi-tools++/util/distribution.hpp
  3929. include/ncbi-tools++/util/error_codes.hpp
  3930. include/ncbi-tools++/util/file_manifest.hpp
  3931. include/ncbi-tools++/util/file_obsolete.hpp
  3932. include/ncbi-tools++/util/floating_point.hpp
  3933. include/ncbi-tools++/util/format_guess.hpp
  3934. include/ncbi-tools++/util/histogram_binning.hpp
  3935. include/ncbi-tools++/util/icanceled.hpp
  3936. include/ncbi-tools++/util/id_mux.hpp
  3937. include/ncbi-tools++/util/impl/compile_time_bits.hpp
  3938. include/ncbi-tools++/util/impl/ct_crc32.hpp
  3939. include/ncbi-tools++/util/impl/floating_point_comparison.hpp
  3940. include/ncbi-tools++/util/itransaction.hpp
  3941. include/ncbi-tools++/util/itree.hpp
  3942. include/ncbi-tools++/util/itree.inl
  3943. include/ncbi-tools++/util/lightstr.hpp
  3944. include/ncbi-tools++/util/limited_size_map.hpp
  3945. include/ncbi-tools++/util/line_reader.hpp
  3946. include/ncbi-tools++/util/linkedset.hpp
  3947. include/ncbi-tools++/util/lmdb/lmdb.h
  3948. include/ncbi-tools++/util/lmdbxx/lmdb++.h
  3949. include/ncbi-tools++/util/lock_vector.hpp
  3950. include/ncbi-tools++/util/logrotate.hpp
  3951. include/ncbi-tools++/util/mask_regexp.hpp
  3952. include/ncbi-tools++/util/math/matrix.hpp
  3953. include/ncbi-tools++/util/math/miscmath.h
  3954. include/ncbi-tools++/util/math/promote.hpp
  3955. include/ncbi-tools++/util/md5.hpp
  3956. include/ncbi-tools++/util/miscmath.h
  3957. include/ncbi-tools++/util/multi_writer.hpp
  3958. include/ncbi-tools++/util/multipattern_search.hpp
  3959. include/ncbi-tools++/util/mutex_pool.hpp
  3960. include/ncbi-tools++/util/ncbi_cache.hpp
  3961. include/ncbi-tools++/util/ncbi_table.hpp
  3962. include/ncbi-tools++/util/ncbi_url.hpp
  3963. include/ncbi-tools++/util/random_gen.hpp
  3964. include/ncbi-tools++/util/range.hpp
  3965. include/ncbi-tools++/util/range_coll.hpp
  3966. include/ncbi-tools++/util/rangelist.hpp
  3967. include/ncbi-tools++/util/rangemap.hpp
  3968. include/ncbi-tools++/util/rangemap.inl
  3969. include/ncbi-tools++/util/reader_writer.hpp
  3970. include/ncbi-tools++/util/regexp.hpp
  3971. include/ncbi-tools++/util/regexp/pcre.h
  3972. include/ncbi-tools++/util/regexp/pcrecpp.h
  3973. include/ncbi-tools++/util/regexp/pcrecpparg.h
  3974. include/ncbi-tools++/util/regexp/pcreposix.h
  3975. include/ncbi-tools++/util/request_control.hpp
  3976. include/ncbi-tools++/util/resize_iter.hpp
  3977. include/ncbi-tools++/util/resource_pool.hpp
  3978. include/ncbi-tools++/util/retry_ctx.hpp
  3979. include/ncbi-tools++/util/row_reader.hpp
  3980. include/ncbi-tools++/util/row_reader.inl
  3981. include/ncbi-tools++/util/row_reader_base.hpp
  3982. include/ncbi-tools++/util/row_reader_char_delimited.hpp
  3983. include/ncbi-tools++/util/row_reader_excel_csv.hpp
  3984. include/ncbi-tools++/util/row_reader_iana_csv.hpp
  3985. include/ncbi-tools++/util/row_reader_iana_tsv.hpp
  3986. include/ncbi-tools++/util/row_reader_ncbi_tsv.hpp
  3987. include/ncbi-tools++/util/scheduler.hpp
  3988. include/ncbi-tools++/util/sequtil/sequtil.hpp
  3989. include/ncbi-tools++/util/sequtil/sequtil_convert.hpp
  3990. include/ncbi-tools++/util/sequtil/sequtil_expt.hpp
  3991. include/ncbi-tools++/util/sequtil/sequtil_manip.hpp
  3992. include/ncbi-tools++/util/sgml_entity.hpp
  3993. include/ncbi-tools++/util/simple_buffer.hpp
  3994. include/ncbi-tools++/util/smalldns.hpp
  3995. include/ncbi-tools++/util/static_map.hpp
  3996. include/ncbi-tools++/util/static_set.hpp
  3997. include/ncbi-tools++/util/strbuffer.hpp
  3998. include/ncbi-tools++/util/strbuffer.inl
  3999. include/ncbi-tools++/util/stream_source.hpp
  4000. include/ncbi-tools++/util/strsearch.hpp
  4001. include/ncbi-tools++/util/sync_queue.hpp
  4002. include/ncbi-tools++/util/table_printer.hpp
  4003. include/ncbi-tools++/util/tables/raw_scoremat.h
  4004. include/ncbi-tools++/util/tables/tables_export.h
  4005. include/ncbi-tools++/util/text_joiner.hpp
  4006. include/ncbi-tools++/util/thread_nonstop.hpp
  4007. include/ncbi-tools++/util/thread_pool.hpp
  4008. include/ncbi-tools++/util/thread_pool_ctrl.hpp
  4009. include/ncbi-tools++/util/thread_pool_old.hpp
  4010. include/ncbi-tools++/util/time_line.hpp
  4011. include/ncbi-tools++/util/timsort.hpp
  4012. include/ncbi-tools++/util/transmissionrw.hpp
  4013. include/ncbi-tools++/util/unicode.hpp
  4014. include/ncbi-tools++/util/utf8.hpp
  4015. include/ncbi-tools++/util/util_exception.hpp
  4016. include/ncbi-tools++/util/util_misc.hpp
  4017. include/ncbi-tools++/util/uttp.hpp
  4018. include/ncbi-tools++/util/value_convert.hpp
  4019. include/ncbi-tools++/util/value_convert_policy.hpp
  4020. include/ncbi-tools++/util/weakmap.hpp
  4021. include/ncbi-tools++/util/weakmap.inl
  4022. include/ncbi-tools++/util/xregexp/arg_regexp.hpp
  4023. include/ncbi-tools++/util/xregexp/mask_regexp.hpp
  4024. include/ncbi-tools++/util/xregexp/regexp.hpp
  4025. include/ncbi-tools++/util/xregexp/regexp_template_tester.hpp
  4026. lib/ncbi-tools++/libaccess-static.a
  4027. lib/ncbi-tools++/libaccess.a
  4028. lib/ncbi-tools++/libalign_format-static.a
  4029. lib/ncbi-tools++/libalign_format.a
  4030. lib/ncbi-tools++/libbiblio-static.a
  4031. lib/ncbi-tools++/libbiblio.a
  4032. lib/ncbi-tools++/libbiotree-static.a
  4033. lib/ncbi-tools++/libbiotree.a
  4034. lib/ncbi-tools++/libblast-static.a
  4035. lib/ncbi-tools++/libblast.a
  4036. lib/ncbi-tools++/libblast_app_util-static.a
  4037. lib/ncbi-tools++/libblast_app_util.a
  4038. lib/ncbi-tools++/libblast_services-static.a
  4039. lib/ncbi-tools++/libblast_services.a
  4040. lib/ncbi-tools++/libblastdb-static.a
  4041. lib/ncbi-tools++/libblastdb.a
  4042. lib/ncbi-tools++/libblastdb_format-static.a
  4043. lib/ncbi-tools++/libblastdb_format.a
  4044. lib/ncbi-tools++/libblastinput-static.a
  4045. lib/ncbi-tools++/libblastinput.a
  4046. lib/ncbi-tools++/libblastxml-static.a
  4047. lib/ncbi-tools++/libblastxml.a
  4048. lib/ncbi-tools++/libblastxml2-static.a
  4049. lib/ncbi-tools++/libblastxml2.a
  4050. lib/ncbi-tools++/libcdd-static.a
  4051. lib/ncbi-tools++/libcdd.a
  4052. lib/ncbi-tools++/libcn3d-static.a
  4053. lib/ncbi-tools++/libcn3d.a
  4054. lib/ncbi-tools++/libcomposition_adjustment-static.a
  4055. lib/ncbi-tools++/libcomposition_adjustment.a
  4056. lib/ncbi-tools++/libconnect-static.a
  4057. lib/ncbi-tools++/libconnect.a
  4058. lib/ncbi-tools++/libconnssl-static.a
  4059. lib/ncbi-tools++/libconnssl.a
  4060. lib/ncbi-tools++/libcreaders-static.a
  4061. lib/ncbi-tools++/libcreaders.a
  4062. lib/ncbi-tools++/libdbapi-static.a
  4063. lib/ncbi-tools++/libdbapi.a
  4064. lib/ncbi-tools++/libdbapi_driver-dll.so
  4065. lib/ncbi-tools++/libdbapi_driver-static.a
  4066. lib/ncbi-tools++/libdbapi_driver.a
  4067. lib/ncbi-tools++/libdbsnp_tooltip_service-static.a
  4068. lib/ncbi-tools++/libdbsnp_tooltip_service.a
  4069. lib/ncbi-tools++/libdocsum-static.a
  4070. lib/ncbi-tools++/libdocsum.a
  4071. lib/ncbi-tools++/libentrez2-static.a
  4072. lib/ncbi-tools++/libentrez2.a
  4073. lib/ncbi-tools++/libentrez2cli-static.a
  4074. lib/ncbi-tools++/libentrez2cli.a
  4075. lib/ncbi-tools++/libentrezgene-static.a
  4076. lib/ncbi-tools++/libentrezgene.a
  4077. lib/ncbi-tools++/libfeatdef-static.a
  4078. lib/ncbi-tools++/libfeatdef.a
  4079. lib/ncbi-tools++/libgbproj-static.a
  4080. lib/ncbi-tools++/libgbproj.a
  4081. lib/ncbi-tools++/libgbseq-static.a
  4082. lib/ncbi-tools++/libgbseq.a
  4083. lib/ncbi-tools++/libgencoll_client-static.a
  4084. lib/ncbi-tools++/libgencoll_client.a
  4085. lib/ncbi-tools++/libgene_info-static.a
  4086. lib/ncbi-tools++/libgene_info.a
  4087. lib/ncbi-tools++/libgeneral-static.a
  4088. lib/ncbi-tools++/libgeneral.a
  4089. lib/ncbi-tools++/libgenesbyloc-static.a
  4090. lib/ncbi-tools++/libgenesbyloc.a
  4091. lib/ncbi-tools++/libgenome_collection-static.a
  4092. lib/ncbi-tools++/libgenome_collection.a
  4093. lib/ncbi-tools++/libhomologene-static.a
  4094. lib/ncbi-tools++/libhomologene.a
  4095. lib/ncbi-tools++/libid1-static.a
  4096. lib/ncbi-tools++/libid1.a
  4097. lib/ncbi-tools++/libid1cli-static.a
  4098. lib/ncbi-tools++/libid1cli.a
  4099. lib/ncbi-tools++/libid2-static.a
  4100. lib/ncbi-tools++/libid2.a
  4101. lib/ncbi-tools++/libid2_split-static.a
  4102. lib/ncbi-tools++/libid2_split.a
  4103. lib/ncbi-tools++/libid2cli-static.a
  4104. lib/ncbi-tools++/libid2cli.a
  4105. lib/ncbi-tools++/libigblast-static.a
  4106. lib/ncbi-tools++/libigblast.a
  4107. lib/ncbi-tools++/libinsdseq-static.a
  4108. lib/ncbi-tools++/libinsdseq.a
  4109. lib/ncbi-tools++/liblocal_taxon-static.a
  4110. lib/ncbi-tools++/liblocal_taxon.a
  4111. lib/ncbi-tools++/libmacro-static.a
  4112. lib/ncbi-tools++/libmacro.a
  4113. lib/ncbi-tools++/libmedlars-static.a
  4114. lib/ncbi-tools++/libmedlars.a
  4115. lib/ncbi-tools++/libmedline-static.a
  4116. lib/ncbi-tools++/libmedline.a
  4117. lib/ncbi-tools++/libmim-static.a
  4118. lib/ncbi-tools++/libmim.a
  4119. lib/ncbi-tools++/libmla-static.a
  4120. lib/ncbi-tools++/libmla.a
  4121. lib/ncbi-tools++/libmlacli-static.a
  4122. lib/ncbi-tools++/libmlacli.a
  4123. lib/ncbi-tools++/libmmdb-static.a
  4124. lib/ncbi-tools++/libmmdb.a
  4125. lib/ncbi-tools++/libncbi_xblobstorage_netcache-static.a
  4126. lib/ncbi-tools++/libncbi_xblobstorage_netcache.a
  4127. lib/ncbi-tools++/libncbi_xcache_dbapi-dll.so
  4128. lib/ncbi-tools++/libncbi_xcache_dbapi-static.a
  4129. lib/ncbi-tools++/libncbi_xcache_dbapi.a
  4130. lib/ncbi-tools++/libncbi_xcache_netcache-dll.so
  4131. lib/ncbi-tools++/libncbi_xcache_netcache-static.a
  4132. lib/ncbi-tools++/libncbi_xcache_netcache.a
  4133. lib/ncbi-tools++/libncbi_xloader_blastdb-static.a
  4134. lib/ncbi-tools++/libncbi_xloader_blastdb.a
  4135. lib/ncbi-tools++/libncbi_xloader_blastdb_rmt-static.a
  4136. lib/ncbi-tools++/libncbi_xloader_blastdb_rmt.a
  4137. lib/ncbi-tools++/libncbi_xloader_genbank-dll.so
  4138. lib/ncbi-tools++/libncbi_xloader_genbank-static.a
  4139. lib/ncbi-tools++/libncbi_xloader_genbank.a
  4140. lib/ncbi-tools++/libncbi_xreader-dll.so
  4141. lib/ncbi-tools++/libncbi_xreader-static.a
  4142. lib/ncbi-tools++/libncbi_xreader.a
  4143. lib/ncbi-tools++/libncbi_xreader_cache-dll.so
  4144. lib/ncbi-tools++/libncbi_xreader_cache-static.a
  4145. lib/ncbi-tools++/libncbi_xreader_cache.a
  4146. lib/ncbi-tools++/libncbi_xreader_gicache-dll.so
  4147. lib/ncbi-tools++/libncbi_xreader_gicache-static.a
  4148. lib/ncbi-tools++/libncbi_xreader_gicache.a
  4149. lib/ncbi-tools++/libncbi_xreader_id1-dll.so
  4150. lib/ncbi-tools++/libncbi_xreader_id1-static.a
  4151. lib/ncbi-tools++/libncbi_xreader_id1.a
  4152. lib/ncbi-tools++/libncbi_xreader_id2-dll.so
  4153. lib/ncbi-tools++/libncbi_xreader_id2-static.a
  4154. lib/ncbi-tools++/libncbi_xreader_id2.a
  4155. lib/ncbi-tools++/libncbimime-static.a
  4156. lib/ncbi-tools++/libncbimime.a
  4157. lib/ncbi-tools++/libobjcoords-static.a
  4158. lib/ncbi-tools++/libobjcoords.a
  4159. lib/ncbi-tools++/libobjprt-static.a
  4160. lib/ncbi-tools++/libobjprt.a
  4161. lib/ncbi-tools++/libomssa-static.a
  4162. lib/ncbi-tools++/libomssa.a
  4163. lib/ncbi-tools++/libpcassay-static.a
  4164. lib/ncbi-tools++/libpcassay.a
  4165. lib/ncbi-tools++/libpcsubstance-static.a
  4166. lib/ncbi-tools++/libpcsubstance.a
  4167. lib/ncbi-tools++/libproj-static.a
  4168. lib/ncbi-tools++/libproj.a
  4169. lib/ncbi-tools++/libproteinkmer-static.a
  4170. lib/ncbi-tools++/libproteinkmer.a
  4171. lib/ncbi-tools++/libpsg_client-static.a
  4172. lib/ncbi-tools++/libpsg_client.a
  4173. lib/ncbi-tools++/libpub-static.a
  4174. lib/ncbi-tools++/libpub.a
  4175. lib/ncbi-tools++/libpubmed-static.a
  4176. lib/ncbi-tools++/libpubmed.a
  4177. lib/ncbi-tools++/libremap-static.a
  4178. lib/ncbi-tools++/libremap.a
  4179. lib/ncbi-tools++/libremapcli-static.a
  4180. lib/ncbi-tools++/libremapcli.a
  4181. lib/ncbi-tools++/libscoremat-static.a
  4182. lib/ncbi-tools++/libscoremat.a
  4183. lib/ncbi-tools++/libsearchbyrsid-static.a
  4184. lib/ncbi-tools++/libsearchbyrsid.a
  4185. lib/ncbi-tools++/libseq-static.a
  4186. lib/ncbi-tools++/libseq.a
  4187. lib/ncbi-tools++/libseqcode-static.a
  4188. lib/ncbi-tools++/libseqcode.a
  4189. lib/ncbi-tools++/libseqdb-static.a
  4190. lib/ncbi-tools++/libseqdb.a
  4191. lib/ncbi-tools++/libseqedit-static.a
  4192. lib/ncbi-tools++/libseqedit.a
  4193. lib/ncbi-tools++/libseqmasks_io-static.a
  4194. lib/ncbi-tools++/libseqmasks_io.a
  4195. lib/ncbi-tools++/libseqset-static.a
  4196. lib/ncbi-tools++/libseqset.a
  4197. lib/ncbi-tools++/libseqsplit-static.a
  4198. lib/ncbi-tools++/libseqsplit.a
  4199. lib/ncbi-tools++/libseqtest-static.a
  4200. lib/ncbi-tools++/libseqtest.a
  4201. lib/ncbi-tools++/libsequtil-static.a
  4202. lib/ncbi-tools++/libsequtil.a
  4203. lib/ncbi-tools++/libsqlitewrapp-static.a
  4204. lib/ncbi-tools++/libsqlitewrapp.a
  4205. lib/ncbi-tools++/libsubmit-static.a
  4206. lib/ncbi-tools++/libsubmit.a
  4207. lib/ncbi-tools++/libtables-static.a
  4208. lib/ncbi-tools++/libtables.a
  4209. lib/ncbi-tools++/libtaxon1-static.a
  4210. lib/ncbi-tools++/libtaxon1.a
  4211. lib/ncbi-tools++/libtaxon3-static.a
  4212. lib/ncbi-tools++/libtaxon3.a
  4213. lib/ncbi-tools++/libtest_mt-static.a
  4214. lib/ncbi-tools++/libtest_mt.a
  4215. lib/ncbi-tools++/libtinyseq-static.a
  4216. lib/ncbi-tools++/libtinyseq.a
  4217. lib/ncbi-tools++/libtrackmgr-static.a
  4218. lib/ncbi-tools++/libtrackmgr.a
  4219. lib/ncbi-tools++/libtrackmgrcli-static.a
  4220. lib/ncbi-tools++/libtrackmgrcli.a
  4221. lib/ncbi-tools++/libtrackmgrgridcli-static.a
  4222. lib/ncbi-tools++/libtrackmgrgridcli.a
  4223. lib/ncbi-tools++/libvalerr-static.a
  4224. lib/ncbi-tools++/libvalerr.a
  4225. lib/ncbi-tools++/libvalid-static.a
  4226. lib/ncbi-tools++/libvalid.a
  4227. lib/ncbi-tools++/libvariation-static.a
  4228. lib/ncbi-tools++/libvariation.a
  4229. lib/ncbi-tools++/libvarrep-static.a
  4230. lib/ncbi-tools++/libvarrep.a
  4231. lib/ncbi-tools++/libwritedb-static.a
  4232. lib/ncbi-tools++/libwritedb.a
  4233. lib/ncbi-tools++/libxalgoblastdbindex-static.a
  4234. lib/ncbi-tools++/libxalgoblastdbindex.a
  4235. lib/ncbi-tools++/libxalgodustmask-static.a
  4236. lib/ncbi-tools++/libxalgodustmask.a
  4237. lib/ncbi-tools++/libxalgosegmask-static.a
  4238. lib/ncbi-tools++/libxalgosegmask.a
  4239. lib/ncbi-tools++/libxalgowinmask-static.a
  4240. lib/ncbi-tools++/libxalgowinmask.a
  4241. lib/ncbi-tools++/libxalnmgr-static.a
  4242. lib/ncbi-tools++/libxalnmgr.a
  4243. lib/ncbi-tools++/libxblast-static.a
  4244. lib/ncbi-tools++/libxblast.a
  4245. lib/ncbi-tools++/libxblastformat-static.a
  4246. lib/ncbi-tools++/libxblastformat.a
  4247. lib/ncbi-tools++/libxcgi-static.a
  4248. lib/ncbi-tools++/libxcgi.a
  4249. lib/ncbi-tools++/libxcleanup-static.a
  4250. lib/ncbi-tools++/libxcleanup.a
  4251. lib/ncbi-tools++/libxcompress-static.a
  4252. lib/ncbi-tools++/libxcompress.a
  4253. lib/ncbi-tools++/libxconnect-static.a
  4254. lib/ncbi-tools++/libxconnect.a
  4255. lib/ncbi-tools++/libxconnserv-static.a
  4256. lib/ncbi-tools++/libxconnserv.a
  4257. lib/ncbi-tools++/libxcser-static.a
  4258. lib/ncbi-tools++/libxcser.a
  4259. lib/ncbi-tools++/libxfcgi-static.a
  4260. lib/ncbi-tools++/libxfcgi.a
  4261. lib/ncbi-tools++/libxformat-static.a
  4262. lib/ncbi-tools++/libxformat.a
  4263. lib/ncbi-tools++/libxhtml-static.a
  4264. lib/ncbi-tools++/libxhtml.a
  4265. lib/ncbi-tools++/libxlogging-static.a
  4266. lib/ncbi-tools++/libxlogging.a
  4267. lib/ncbi-tools++/libxncbi-static.a
  4268. lib/ncbi-tools++/libxncbi.a
  4269. lib/ncbi-tools++/libxnetblast-static.a
  4270. lib/ncbi-tools++/libxnetblast.a
  4271. lib/ncbi-tools++/libxnetblastcli-static.a
  4272. lib/ncbi-tools++/libxnetblastcli.a
  4273. lib/ncbi-tools++/libxobjedit-static.a
  4274. lib/ncbi-tools++/libxobjedit.a
  4275. lib/ncbi-tools++/libxobjmgr-static.a
  4276. lib/ncbi-tools++/libxobjmgr.a
  4277. lib/ncbi-tools++/libxobjread-static.a
  4278. lib/ncbi-tools++/libxobjread.a
  4279. lib/ncbi-tools++/libxobjreadex-static.a
  4280. lib/ncbi-tools++/libxobjreadex.a
  4281. lib/ncbi-tools++/libxobjsimple-static.a
  4282. lib/ncbi-tools++/libxobjsimple.a
  4283. lib/ncbi-tools++/libxobjutil-static.a
  4284. lib/ncbi-tools++/libxobjutil.a
  4285. lib/ncbi-tools++/libxregexp-static.a
  4286. lib/ncbi-tools++/libxregexp.a
  4287. lib/ncbi-tools++/libxregexp_template_tester-static.a
  4288. lib/ncbi-tools++/libxregexp_template_tester.a
  4289. lib/ncbi-tools++/libxser-static.a
  4290. lib/ncbi-tools++/libxser.a
  4291. lib/ncbi-tools++/libxthrserv-static.a
  4292. lib/ncbi-tools++/libxthrserv.a
  4293. lib/ncbi-tools++/libxutil-static.a
  4294. lib/ncbi-tools++/libxutil.a
  4295. lib/ncbi-tools++/libxxconnect-static.a
  4296. lib/ncbi-tools++/libxxconnect.a
Collapse this list.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}blast+>0:biology/ncbi-blast+
To install the port: cd /usr/ports/biology/ncbi-blast+/ && make install clean
To add the package: pkg install ncbi-blast+
PKGNAME: ncbi-blast+
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
ncbi-blast+
ABIlatestquarterly
FreeBSD:11:aarch642.7.1_12.10.0_1
FreeBSD:11:amd642.10.0_12.10.0_1
FreeBSD:11:armv62.2.30_2-
FreeBSD:11:i3862.10.0_12.10.0_1
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch642.7.1_12.10.0_1
FreeBSD:12:amd642.10.0_12.10.0_1
FreeBSD:12:armv62.7.1_1-
FreeBSD:12:armv72.7.1_1-
FreeBSD:12:i3862.10.0_12.10.0_1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-2.10.0_1
FreeBSD:13:aarch642.10.0_1-
FreeBSD:13:amd642.10.0_1-
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3862.10.0_1-
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
  2. python3.7 : lang/python37
  3. gcc9 : lang/gcc9
  4. as : devel/binutils
  5. perl5>=5.30.r1<5.31 : lang/perl5.30
Runtime dependencies:
  1. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  2. p5-JSON>=0 : converters/p5-JSON
  3. python3.7 : lang/python37
  4. gcc9 : lang/gcc9
  5. perl5>=5.30.r1<5.31 : lang/perl5.30
Library dependencies:
  1. libpcre.so : devel/pcre
  2. liblmdb.so : databases/lmdb
  3. liblzo2.so : archivers/lzo2
  4. libgnutls.so : security/gnutls
  5. libtspi.so : security/trousers
  6. libgmp.so : math/gmp
  7. libidn2.so : dns/libidn2
  8. libnettle.so : security/nettle
  9. libhogweed.so : security/nettle
  10. libtasn1.so : security/libtasn1
  11. libp11-kit.so : security/p11-kit
  12. libgcrypt.so : security/libgcrypt
  13. libgpg-error.so : security/libgpg-error
  14. libsqlite3.so : databases/sqlite3
  15. libuv.so : devel/libuv
  16. libnghttp2.so : www/libnghttp2
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.10.0/
  2. https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
Port Moves
  • port moved here from biology/ncbi-blast on 2014-12-30
    REASON: Clarify that this is blast+ and not the blast, allow for a future ncbi-blast port

Number of commits found: 35

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
16 May 2020 10:51:33
Original commit files touched by this commit  2.10.0_1
Revision:535391
sunpoet search for other commits by this committer
Bump PORTREVISION for security/nettle shlib change
26 Dec 2019 16:21:18
Original commit files touched by this commit  2.10.0
Revision:520932
jwb search for other commits by this committer
biology/ncbi-blast+: Upgrade to 2.10.0

Numerous minor bug fixes, enhancements and dependency upgrades
Minor port clean-up
1 patch from previous version upstreamed

Reported by:    portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit  2.9.0_3
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Jul 2019 23:58:22
Original commit files touched by this commit  2.9.0_2
Revision:506497
jwb search for other commits by this committer
ncbi-blast+: Unbreak build with gcc8 following gcc9 patch

GCC 8 and 9 are incompatible in handling const variables with OpenMP
default(none).  All const variables default to shared even with default(none)
present.  8 errors out if a const variable is explicitly defined as shared and
9 requires an explicit definition.

Using an upstream trunk patch for now, which checks the compiler version.
Also discussing more portable approaches to avoid future issues.

Reported by:    jrm
11 Jul 2019 13:53:30
Original commit files touched by this commit  2.9.0_1
Revision:506409
jwb search for other commits by this committer
ncbi-blast+: Fix build with gcc9

GCC 9 requires OpenMP variables to be explicitly defined as shared or private
where earlier versions fell back on default.  New patch sent upstream.

PR:             238471
Reported by:    gerald
09 Jul 2019 17:13:07
Original commit files touched by this commit  2.9.0_1
Revision:506289
sunpoet search for other commits by this committer
Update security/nettle to 3.5.1

- Bump PORTREVISION of dependent ports for shlib change
- Fix build of devel/pijul [1]

Changes:	https://git.lysator.liu.se/nettle/nettle/blob/master/NEWS
PR:		238991
Exp-run by:	antoine
Thanks to:	tobik [1]
14 Jun 2019 00:37:59
Original commit files touched by this commit  2.9.0
Revision:504153
jwb search for other commits by this committer
biology/ncbi-blast+: Fix build on powerpc64, add run dep for update_blastdb.pl
12 Jun 2019 23:53:33
Original commit files touched by this commit  2.9.0
Revision:504047
jwb search for other commits by this committer
biology/ncbi-blast+: Upgrade to 2.9.0

Fixes build issue with gcc9

PR:             238471
Reported by:    gerald
09 Feb 2019 23:25:37
Original commit files touched by this commit  2.8.1_2
Revision:492534
sunpoet search for other commits by this committer
Update dns/libidn2 to 2.1.1

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://gitlab.com/libidn/libidn2/blob/master/NEWS
06 Jan 2019 20:39:43
Original commit files touched by this commit  2.8.1_1
Revision:489529
sunpoet search for other commits by this committer
Update dns/libidn2 to 2.1.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://gitlab.com/libidn/libidn2/blob/master/NEWS
01 Jan 2019 19:55:44
Original commit files touched by this commit  2.8.1
Revision:488931
jwb search for other commits by this committer
biology/ncbi-blast+: Upgrade to 2.8.1

Remove hacks that are no longer needed
New patch for endian.h location

Approved by:    jrm (mentor, implicit)
12 Dec 2018 01:35:36
Original commit files touched by this commit  2.7.1_2
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
29 Jul 2018 22:18:46
Original commit files touched by this commit  2.7.1_1
Revision:475857
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
03 Jun 2018 11:14:53
Original commit files touched by this commit  2.7.1
Revision:471489
linimon search for other commits by this committer
Mark as broken on powerpc64.  The entire, unhelpful, error message is:

# gmake[2]: Leaving directory
'/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build'
# gmake[1]: *** [Makefile:24: all] Error 2

Approved by:	portmgr (tier-2 blanket)
27 Mar 2018 18:04:21
Original commit files touched by this commit  2.7.1
Revision:465726
jwb search for other commits by this committer
biology/ncbi-blast+: Upgrade to 2.7.1

Patch Makefile.in.top to cleanly support DESTDIR

Also resolves 225002, conflict with libproj

PR:             226037
Reported by:    wen
Reviewed by:    mat rene
Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D14854
10 Mar 2018 17:46:06
Original commit files touched by this commit  2.5.0_3
Revision:464084
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
31 Jan 2018 01:07:08
Original commit files touched by this commit  2.5.0_2
Revision:460452
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
10 Sep 2017 20:55:39
Original commit files touched by this commit  2.5.0_2
Revision:449591
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
01 Apr 2017 15:23:32
Original commit files touched by this commit  2.5.0_1
Revision:437439
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
22 Dec 2016 16:49:17
Original commit files touched by this commit  2.5.0
Revision:429170
jrm search for other commits by this committer
biology/ncbi-blast+: Add MAKE_JOBS_UNSAFE

PR:		214997
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8882
19 Dec 2016 03:26:54
Original commit files touched by this commit  2.5.0
Revision:428903
wen search for other commits by this committer
- Update to 2.5.0

PR:		214997
Submitted by:	mzaki@e-mail.ne.jp
Approved by:	maintainer(timeout, > 14 days)
20 Nov 2016 09:38:09
Original commit files touched by this commit  2.2.30_4
Revision:426566
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
11 Sep 2016 05:35:42
Original commit files touched by this commit  2.2.30_3
Revision:421794
marino search for other commits by this committer
biology/ncbi-blast+: Remove redundant LIB_DEPENDS (bz2 libary)

All support platforms have libbz2.so in base, so this port will never
pull in archivers/bzip2.

Approved by:	just-fix-it
09 Sep 2016 19:42:46
Original commit files touched by this commit  2.2.30_2
Revision:421635
amdmi3 search for other commits by this committer
Most commonly used build systems support silent builds, when they
hide actual commands executed and only show short summary line (like
"CC foo.c"). CMake and ninja enable this by default, some autotools
using ports do as well. This is unacceptable because we need complete
build logs at any time, so we now switch to verbose build logs
unconditionally. Note that this change deliberately affects ALL
builds and not only package builds on cluster, because we need to
be sure that user experiencing failure can always provide informative
build log regardless of settings and without rerunning the build.

Change summary:

- Always do verbose builds for cmake, ninja and GNU configure (the
  latter includes check if --disable-silent-rules is actually supported
  by the configure script; there are isolated cases when it's not true)
(Only the first 15 lines of the commit message are shown above View all of this commit message)
06 Sep 2016 13:30:49
Original commit files touched by this commit  2.2.30_2
Revision:421424
amdmi3 search for other commits by this committer
- Make configure script handle --disable-silent-rules gracefully

PR:		212075
Approved by:	portmgr blanket
01 Apr 2016 13:29:17
Original commit files touched by this commit  2.2.30_2
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
12 Jan 2016 14:33:21
Original commit files touched by this commit  2.2.30_2
Revision:405874
amdmi3 search for other commits by this committer
Add Public Domain support to ports license framework. You can now use

    LICENSE=  PD

Note that although Public Domain is not technically a license, it's
handled in the same way as licenses here, which is a common practice
(Arch, Gentoo, Fedora, Debian, even FOSSology do the same).

Convert all ports which redefine Public Domain LICENSE to LICENSE=PD.

Approved by:	portmgr (bapt)
Differential Revision:	D4149
11 Dec 2015 08:48:57
Original commit files touched by this commit  2.2.30_2
Revision:403506
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
04 May 2015 06:09:00
Original commit files touched by this commit  2.2.30_2
Revision:385376
wen search for other commits by this committer
- Unbreak

PR:		199734
Submitted by:	jwbacon@tds.net(maintainer)
28 Apr 2015 12:29:13
Original commit files touched by this commit  2.2.30_2
Revision:384895
antoine search for other commits by this committer
Mark BROKEN: fails to configure

===>  Configuring for ncbi-blast+-2.2.30_2
configure: error: --localstatedir=/var:  unknown option;  use --help to show
usage

Reported by:	pkg-fallout
25 Apr 2015 14:21:59
Original commit files touched by this commit  2.2.30_2
Revision:384733
marino search for other commits by this committer
biology/ncbi-blast+: Add additionl MASTER_SITE to unbreak fetch

The distfile was rerolled but nobody knows why (not a good sign).  The
maintainer has added a new MASTER_SITE with the original distfile in
order to unbreak fetch.

PR:		199474
Submitted by:	maintainer (Jason Bacon)
05 Apr 2015 17:55:36
Original commit files touched by this commit  2.2.30_2
Revision:383309
bapt search for other commits by this committer
Mark as broken unfetchable ports
06 Mar 2015 10:39:32
Original commit files touched by this commit  2.2.30_2
Revision:380582
arved search for other commits by this committer
Add a run dependency used by update_blastdb.pl

PR:		198331
Submitted by:	maintainer
31 Dec 2014 00:31:56
Original commit files touched by this commit  2.2.30_1
Revision:375866
grembo search for other commits by this committer
Fix PKGNAMEPREFIX of biology/ncbi-blast+, so that the resulting package is
named like the port.

Approved by:	mentors (implicit)
30 Dec 2014 20:03:14
Original commit files touched by this commit  2.2.30
Revision:375848
grembo search for other commits by this committer
Rename biology/ncbi-blast to biology/ncbi-blast+

Approved by:	mentors (implicit)

Number of commits found: 35

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