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Port details
bamtools API and toolkit for handling BAM files
2.5.2_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.5.2Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-03-28 13:26:48
Last Update: 2021-11-05 19:09:19
Commit Hash: 00f2a7a
License: MIT
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (32 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/bamtools-2.5.2_1/catalog.mk
  3. /usr/local/share/licenses/bamtools-2.5.2_1/LICENSE
  4. /usr/local/share/licenses/bamtools-2.5.2_1/MIT
  5. bin/bamtools
  6. include/bamtools/api/BamAlgorithms.h
  7. include/bamtools/api/BamAlignment.h
  8. include/bamtools/api/BamAux.h
  9. include/bamtools/api/BamConstants.h
  10. include/bamtools/api/BamIndex.h
  11. include/bamtools/api/BamMultiReader.h
  12. include/bamtools/api/BamReader.h
  13. include/bamtools/api/BamWriter.h
  14. include/bamtools/api/IBamIODevice.h
  15. include/bamtools/api/SamConstants.h
  16. include/bamtools/api/SamHeader.h
  17. include/bamtools/api/SamProgram.h
  18. include/bamtools/api/SamProgramChain.h
  19. include/bamtools/api/SamReadGroup.h
  20. include/bamtools/api/SamReadGroupDictionary.h
  21. include/bamtools/api/SamSequence.h
  22. include/bamtools/api/SamSequenceDictionary.h
  23. include/bamtools/api/algorithms/Sort.h
  24. include/bamtools/api/api_global.h
  25. include/bamtools/api/bamtools_api_export.h
  26. include/bamtools/shared/bamtools_global.h
  27. lib/libbamtools.so
  28. lib/libbamtools.so.2.5.2
  29. libdata/pkgconfig/bamtools-1.pc
  30. @owner
  31. @group
  32. @mode
Collapse this list.
Dependency lines:
  • For RUN/BUILD depends:
    • bamtools>0:biology/bamtools
  • For LIB depends:
    • libbamtools.so:biology/bamtools
To install the port:
cd /usr/ports/biology/bamtools/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/bamtools
  • pkg install bamtools
PKGNAME: bamtools
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
bamtools
ABIlatestquarterly
FreeBSD:11:aarch642.5.12.5.1_2
FreeBSD:11:amd642.5.22.5.1_2
FreeBSD:11:armv6-2.5.1_2
FreeBSD:11:i3862.5.22.5.1_2
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch642.5.12.5.2
FreeBSD:12:amd642.5.2_12.5.2
FreeBSD:12:armv62.5.12.5.1_2
FreeBSD:12:armv72.5.12.5.1_2
FreeBSD:12:i3862.5.2_12.5.2
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-2.5.1_2
FreeBSD:13:aarch642.5.1_22.5.2
FreeBSD:13:amd642.5.2_12.5.2
FreeBSD:13:armv62.5.1_22.5.1_2
FreeBSD:13:armv72.5.1_22.5.2
FreeBSD:13:i3862.5.2_12.5.2
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc642.5.1_22.5.1_2
FreeBSD:14:aarch642.5.2_1-
FreeBSD:14:amd642.5.2_1-
FreeBSD:14:armv62.5.1_2-
FreeBSD:14:armv72.5.1_2-
FreeBSD:14:i3862.5.2_1-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.5.1_2-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
Library dependencies:
  1. libjsoncpp.so : devel/jsoncpp
This port is required by:
for Run
  1. biology/biostar-tools
  2. biology/ddocent

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/pezmaster31/bamtools/tar.gz/v2.5.2?dummy=/
Collapse this list.

Number of commits found: 8

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
05 Nov 2021 19:09:19
 files touched by this commit commit hash:00f2a7aec7a58679a8d692ebd093cd16c6337948  2.5.2_1
Yuri Victorovich (yuri) search for other commits by this committer
Author: Daniel Engberg
devel/jsoncpp: Update to 1.9.4 -> 1.9.5

PR:		259654
06 Jul 2021 18:10:54
 files touched by this commit commit hash:814a894e90121538d402f40d5d1311adb2eda00f  2.5.2
Jason W. Bacon (jwb) search for other commits by this committer
biology/bamtools: Update to 2.5.2

Code clean up

Changes:        https://github.com/pezmaster31/bamtools/releases/tag/v2.5.2
Reported by:    portscout
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  2.5.1_2
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.5.1_2
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
30 Jun 2020 17:46:18
Original commit files touched by this commit Revision:540909  2.5.1_2
tcberner search for other commits by this committer
Bump devel/jsoncpp consumers after r540853.

Reported by:	Kevin Oberman <rkoberman@gmail.com>
13 Jan 2020 21:38:36
Original commit files touched by this commit Revision:522975  2.5.1_1
yuri search for other commits by this committer
devel/jsoncpp: Update 1.8.1 -> 1.9.2

PR:		229677
Differential Revision:	D22905
25 Dec 2018 20:25:40
Original commit files touched by this commit Revision:488341  2.5.1
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
28 Mar 2018 13:26:31
Original commit files touched by this commit Revision:465808  2.5.1
jwb search for other commits by this committer
biology/bamtools: API and toolkit for handling BAM files

Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D14877

Number of commits found: 8