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Port details
bamtools API and toolkit for handling BAM files
2.5.1_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.5.1Version of this port present on the latest quarterly branch.
Maintainer: search for ports maintained by this maintainer
Port Added: 2018-03-28 13:26:48
Last Update: 2020-01-13 21:38:36
SVN Revision: 522975
License: MIT
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (28 items)
  1. @ldconfig
  2. /usr/local/share/licenses/bamtools-2.5.1_1/
  3. /usr/local/share/licenses/bamtools-2.5.1_1/LICENSE
  4. /usr/local/share/licenses/bamtools-2.5.1_1/MIT
  5. bin/bamtools
  6. include/bamtools/api/BamAlgorithms.h
  7. include/bamtools/api/BamAlignment.h
  8. include/bamtools/api/BamAux.h
  9. include/bamtools/api/BamConstants.h
  10. include/bamtools/api/BamIndex.h
  11. include/bamtools/api/BamMultiReader.h
  12. include/bamtools/api/BamReader.h
  13. include/bamtools/api/BamWriter.h
  14. include/bamtools/api/IBamIODevice.h
  15. include/bamtools/api/SamConstants.h
  16. include/bamtools/api/SamHeader.h
  17. include/bamtools/api/SamProgram.h
  18. include/bamtools/api/SamProgramChain.h
  19. include/bamtools/api/SamReadGroup.h
  20. include/bamtools/api/SamReadGroupDictionary.h
  21. include/bamtools/api/SamSequence.h
  22. include/bamtools/api/SamSequenceDictionary.h
  23. include/bamtools/api/algorithms/Sort.h
  24. include/bamtools/api/api_global.h
  25. include/bamtools/shared/bamtools_global.h
  26. lib/
  27. lib/
  28. libdata/pkgconfig/bamtools-1.pc
Collapse this list.
Dependency lines:
  • bamtools>0:biology/bamtools
To install the port: cd /usr/ports/biology/bamtools/ && make install clean
To add the package: pkg install bamtools
PKGNAME: bamtools
Flavors: there is no flavor information for this port.

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
Library dependencies:
  1. : devel/jsoncpp
This port is required by:
for Run
  1. biology/ddocent

Configuration Options


Master Sites:

Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
13 Jan 2020 21:38:36
Original commit files touched by this commit  2.5.1_1
yuri search for other commits by this committer
devel/jsoncpp: Update 1.8.1 -> 1.9.2

PR:		229677
Differential Revision:	D22905
25 Dec 2018 20:25:40
Original commit files touched by this commit  2.5.1
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
28 Mar 2018 13:26:31
Original commit files touched by this commit  2.5.1
jwb search for other commits by this committer
biology/bamtools: API and toolkit for handling BAM files

Approved by:    jrm
Differential Revision:

Number of commits found: 3

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