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Port details
biolibc-tools High-performance bioinformatics tools based on biolibc
0.1.0.34 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-08-30 13:12:06
Last Update: 2021-08-30 13:09:23
Commit Hash: 904aa60
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (13 items)
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  1. /usr/local/share/licenses/biolibc-tools-0.1.0.34/catalog.mk
  2. /usr/local/share/licenses/biolibc-tools-0.1.0.34/LICENSE
  3. /usr/local/share/licenses/biolibc-tools-0.1.0.34/BSD2CLAUSE
  4. bin/fastq-derep.sh
  5. bin/fastx-derep
  6. bin/fastx2tsv
  7. libexec/biolibc-tools/uniq-seqs.awk
  8. man/man1/fastq-dedup.sh.1.gz
  9. man/man1/fastx-derep.1.gz
  10. man/man1/fastx2tsv.1.gz
  11. @owner
  12. @group
  13. @mode
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Dependency lines:
  • biolibc-tools>0:biology/biolibc-tools
To install the port: cd /usr/ports/biology/biolibc-tools/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/biolibc-tools
  • pkg install biolibc-tools
PKGNAME: biolibc-tools
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
biolibc-tools
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.1.0.34-
FreeBSD:11:armv6--
FreeBSD:11:i3860.1.0.34-
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.1.0.34
FreeBSD:12:amd640.1.0.340.1.0.34
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.1.0.340.1.0.34
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-0.1.0.34
FreeBSD:13:amd640.1.0.340.1.0.34
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3860.1.0.340.1.0.34
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch640.1.0.34-
FreeBSD:14:amd640.1.0.34-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3860.1.0.34-
FreeBSD:14:mips--
FreeBSD:14:mips640.1.0.34-
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. uthash>0 : devel/uthash
Library dependencies:
  1. libbiolibc.so : biology/biolibc
  2. libxtend.so : devel/libxtend
  3. libxxhash.so : devel/xxhash
There are no ports dependent upon this port

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
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  1. https://codeload.github.com/auerlab/biolibc-tools/tar.gz/0.1.0-34-gf1224de?dummy=/
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Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Aug 2021 13:09:23
 files touched by this commit commit hash:904aa60469601239cefbb5dde7f5aa33ccac9a21  0.1.0.34
jwb search for other commits by this committer
biology/biolibc-tools: High-performance tools based on biolibc

Biolibc-tools is a collection of simple fast, memory-efficient,
programs for processing biological data.  These are simple programs
built on biolibc that are not complex enough to warrant a separate
project.

Number of commits found: 1