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Current status

The server has been repaired, with a new power supply, for $23. I am waiting for lower COVID rates before visiting the datacenter to return it.
Port details
biolibc Low-level high-performance bioinformatics library
0.1.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-03-21 15:10:53
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (12 items)
Collapse this list.
  1. /usr/local/share/licenses/biolibc-0.1.1/catalog.mk
  2. /usr/local/share/licenses/biolibc-0.1.1/LICENSE
  3. /usr/local/share/licenses/biolibc-0.1.1/BSD2CLAUSE
  4. include/biostring.h
  5. include/dsvio.h
  6. include/samio.h
  7. include/vcfio.h
  8. lib/libbiolibc.a
  9. man/man1/biolibc.1.gz
  10. @owner
  11. @group
  12. @mode
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Dependency lines:
  • biolibc>0:biology/biolibc
To install the port: cd /usr/ports/biology/biolibc/ && make install clean
To add the package: pkg install biolibc
PKGNAME: biolibc
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
biolibc
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.1.10.1.1
FreeBSD:11:armv6--
FreeBSD:11:i3860.1.10.1.1
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.1.1
FreeBSD:12:amd640.1.10.1.1
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.1.10.1.1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-0.1.1
FreeBSD:13:aarch64-0.1.1
FreeBSD:13:amd640.1.10.1.1
FreeBSD:13:armv6-0.1.1
FreeBSD:13:armv7-0.1.1
FreeBSD:13:i3860.1.10.1.1
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-0.1.1
FreeBSD:14:aarch640.1.1-
FreeBSD:14:amd640.1.1-
FreeBSD:14:armv60.1.1-
FreeBSD:14:armv70.1.1-
FreeBSD:14:i3860.1.1-
FreeBSD:14:mips--
FreeBSD:14:mips640.1.1-
FreeBSD:14:powerpc640.1.1-
 

This port is required by:
for Build
  1. biology/ad2vcf
  2. biology/vcf-split
  3. biology/vcf2hap

Configuration Options:
Options name:
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/auerlab/biolibc/tar.gz/0.1.1?dummy=/
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Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.1.1
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.1.1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
21 Mar 2021 15:10:17
Original commit files touched by this commit Revision:568921  0.1.1
jwb search for other commits by this committer
biology/biolibc: Low-level high-performance bioinformatics library

Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data.  Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications.  These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.

Number of commits found: 3