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Port details
biolibc Low-level high-performance bioinformatics library
0.1.3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-03-21 15:10:53
Last Update: 2021-06-11 15:38:27
Commit Hash: 45da218
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (35 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/biolibc-0.1.3/catalog.mk
  3. /usr/local/share/licenses/biolibc-0.1.3/LICENSE
  4. /usr/local/share/licenses/biolibc-0.1.3/BSD2CLAUSE
  5. include/biolibc/bed.h
  6. include/biolibc/biolibc.h
  7. include/biolibc/dsv.h
  8. include/biolibc/gff.h
  9. include/biolibc/plist.h
  10. include/biolibc/sam-buff.h
  11. include/biolibc/sam.h
  12. include/biolibc/vcf.h
  13. lib/libbiolibc.a
  14. lib/libbiolibc.so
  15. lib/libbiolibc.so.2
  16. lib/libbiolibc.so.2.0
  17. man/man3/bed_check_order.3.gz
  18. man/man3/bed_gff_cmp.3.gz
  19. man/man3/bed_read_feature.3.gz
  20. man/man3/bed_set_chromosome.3.gz
  21. man/man3/bed_set_end_pos.3.gz
  22. man/man3/bed_set_fields.3.gz
  23. man/man3/bed_set_name.3.gz
  24. man/man3/bed_set_rgb_str.3.gz
  25. man/man3/bed_set_score.3.gz
  26. man/man3/bed_set_start_pos.3.gz
  27. man/man3/bed_set_strand.3.gz
  28. man/man3/bed_set_thick_end_pos.3.gz
  29. man/man3/bed_set_thick_start_pos.3.gz
  30. man/man3/bed_skip_header.3.gz
  31. man/man3/bed_write_feature.3.gz
  32. man/man3/biolibc.3.gz
  33. @owner
  34. @group
  35. @mode
Collapse this list.
Dependency lines:
  • For RUN/BUILD depends:
    • biolibc>0:biology/biolibc
  • For LIB depends:
    • libbiolibc.so:biology/biolibc
To install the port: cd /usr/ports/biology/biolibc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/biolibc
  • pkg install biolibc
PKGNAME: biolibc
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
biolibc
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.1.30.1.1
FreeBSD:11:armv6--
FreeBSD:11:i3860.1.30.1.1
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.1.1
FreeBSD:12:amd640.1.30.1.1
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.1.30.1.1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-0.1.1
FreeBSD:13:aarch64-0.1.1
FreeBSD:13:amd640.1.30.1.1
FreeBSD:13:armv6-0.1.1
FreeBSD:13:armv7-0.1.1
FreeBSD:13:i3860.1.30.1.1
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-0.1.1
FreeBSD:14:aarch640.1.3-
FreeBSD:14:amd640.1.3-
FreeBSD:14:armv60.1.1-
FreeBSD:14:armv70.1.1-
FreeBSD:14:i3860.1.3-
FreeBSD:14:mips--
FreeBSD:14:mips640.1.3-
FreeBSD:14:powerpc640.1.1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Library dependencies:
  1. libxtend.so : devel/libxtend
This port is required by:
for Libraries
  1. biology/ad2vcf
  2. biology/peak-classifier
  3. biology/vcf-split
  4. biology/vcf2hap

Configuration Options:
Options name:
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/auerlab/biolibc/tar.gz/0.1.3?dummy=/
Collapse this list.

Number of commits found: 5

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
11 Jun 2021 15:38:27
 files touched by this commit commit hash:45da218542662de740486dbc6a5aa79a0e6d00ea  0.1.3
jwb search for other commits by this committer
biology/biolibc: Remove comment used to silence portlint
11 Jun 2021 15:05:18
 files touched by this commit commit hash:495634f580bdb5bf7020c53ef98d348ad682bb86  0.1.3
jwb search for other commits by this committer
biology/biolibc: Update to 0.1.3

Changes:        https://github.com/auerlab/biolibc/releases
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.1.1
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.1.1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
21 Mar 2021 15:10:17
Original commit files touched by this commit Revision:568921  0.1.1
jwb search for other commits by this committer
biology/biolibc: Low-level high-performance bioinformatics library

Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data.  Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications.  These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.

Number of commits found: 5