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Port details
biolibc Low-level high-performance bioinformatics library
0.2.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.2.0.11Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-03-21 15:10:53
Last Update: 2021-12-14 19:45:31
Commit Hash: 0646ba9
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (392 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/biolibc-0.2.1/catalog.mk
  3. /usr/local/share/licenses/biolibc-0.2.1/LICENSE
  4. /usr/local/share/licenses/biolibc-0.2.1/BSD2CLAUSE
  5. include/biolibc/bed.h
  6. include/biolibc/biolibc.h
  7. include/biolibc/biostring.h
  8. include/biolibc/fasta.h
  9. include/biolibc/fastq.h
  10. include/biolibc/fastx.h
  11. include/biolibc/gff.h
  12. include/biolibc/overlap.h
  13. include/biolibc/pos-list.h
  14. include/biolibc/sam-buff.h
  15. include/biolibc/sam.h
  16. include/biolibc/translate.h
  17. include/biolibc/vcf.h
  18. lib/libbiolibc.a
  19. lib/libbiolibc.so
  20. lib/libbiolibc.so.2
  21. lib/libbiolibc.so.2.0
  22. man/man3/BL_BED_BLOCK_COUNT.3.gz
  23. man/man3/BL_BED_BLOCK_SIZES.3.gz
  24. man/man3/BL_BED_BLOCK_SIZES_AE.3.gz
  25. man/man3/BL_BED_BLOCK_STARTS.3.gz
  26. man/man3/BL_BED_BLOCK_STARTS_AE.3.gz
  27. man/man3/BL_BED_CHROM.3.gz
  28. man/man3/BL_BED_CHROM_AE.3.gz
  29. man/man3/BL_BED_CHROM_END.3.gz
  30. man/man3/BL_BED_CHROM_START.3.gz
  31. man/man3/BL_BED_FIELDS.3.gz
  32. man/man3/BL_BED_ITEM_RGB.3.gz
  33. man/man3/BL_BED_ITEM_RGB_AE.3.gz
  34. man/man3/BL_BED_NAME.3.gz
  35. man/man3/BL_BED_NAME_AE.3.gz
  36. man/man3/BL_BED_SCORE.3.gz
  37. man/man3/BL_BED_STRAND.3.gz
  38. man/man3/BL_BED_THICK_END.3.gz
  39. man/man3/BL_BED_THICK_START.3.gz
  40. man/man3/BL_FASTA_DESC.3.gz
  41. man/man3/BL_FASTA_DESC_AE.3.gz
  42. man/man3/BL_FASTA_DESC_ARRAY_SIZE.3.gz
  43. man/man3/BL_FASTA_DESC_LEN.3.gz
  44. man/man3/BL_FASTA_SEQ.3.gz
  45. man/man3/BL_FASTA_SEQ_AE.3.gz
  46. man/man3/BL_FASTA_SEQ_ARRAY_SIZE.3.gz
  47. man/man3/BL_FASTA_SEQ_LEN.3.gz
  48. man/man3/BL_FASTQ_DESC.3.gz
  49. man/man3/BL_FASTQ_DESC_AE.3.gz
  50. man/man3/BL_FASTQ_DESC_ARRAY_SIZE.3.gz
  51. man/man3/BL_FASTQ_DESC_LEN.3.gz
  52. man/man3/BL_FASTQ_PLUS.3.gz
  53. man/man3/BL_FASTQ_PLUS_AE.3.gz
  54. man/man3/BL_FASTQ_PLUS_ARRAY_SIZE.3.gz
  55. man/man3/BL_FASTQ_PLUS_LEN.3.gz
  56. man/man3/BL_FASTQ_QUAL.3.gz
  57. man/man3/BL_FASTQ_QUAL_AE.3.gz
  58. man/man3/BL_FASTQ_QUAL_ARRAY_SIZE.3.gz
  59. man/man3/BL_FASTQ_QUAL_LEN.3.gz
  60. man/man3/BL_FASTQ_SEQ.3.gz
  61. man/man3/BL_FASTQ_SEQ_AE.3.gz
  62. man/man3/BL_FASTQ_SEQ_ARRAY_SIZE.3.gz
  63. man/man3/BL_FASTQ_SEQ_LEN.3.gz
  64. man/man3/BL_GFF_ATTRIBUTES.3.gz
  65. man/man3/BL_GFF_ATTRIBUTES_AE.3.gz
  66. man/man3/BL_GFF_END.3.gz
  67. man/man3/BL_GFF_FEATURE.3.gz
  68. man/man3/BL_GFF_FEATURE_AE.3.gz
  69. man/man3/BL_GFF_FEATURE_ID.3.gz
  70. man/man3/BL_GFF_FEATURE_ID_AE.3.gz
  71. man/man3/BL_GFF_GENE_NAME.3.gz
  72. man/man3/BL_GFF_GENE_NAME_AE.3.gz
  73. man/man3/BL_GFF_PHASE.3.gz
  74. man/man3/BL_GFF_SCORE.3.gz
  75. man/man3/BL_GFF_SEQUENCE.3.gz
  76. man/man3/BL_GFF_SEQUENCE_AE.3.gz
  77. man/man3/BL_GFF_SOURCE.3.gz
  78. man/man3/BL_GFF_SOURCE_AE.3.gz
  79. man/man3/BL_GFF_START.3.gz
  80. man/man3/BL_GFF_STRAND.3.gz
  81. man/man3/BL_OVERLAP_FEATURE1_LEN.3.gz
  82. man/man3/BL_OVERLAP_FEATURE2_LEN.3.gz
  83. man/man3/BL_OVERLAP_OVERLAP_END.3.gz
  84. man/man3/BL_OVERLAP_OVERLAP_LEN.3.gz
  85. man/man3/BL_OVERLAP_OVERLAP_START.3.gz
  86. man/man3/BL_POS_LIST_ARRAY_SIZE.3.gz
  87. man/man3/BL_POS_LIST_COUNT.3.gz
  88. man/man3/BL_POS_LIST_POSITIONS.3.gz
  89. man/man3/BL_POS_LIST_POSITIONS_AE.3.gz
  90. man/man3/BL_SAM_BUFF_ALIGNMENTS.3.gz
  91. man/man3/BL_SAM_BUFF_ALIGNMENTS_AE.3.gz
  92. man/man3/BL_SAM_BUFF_BUFFERED_COUNT.3.gz
  93. man/man3/BL_SAM_BUFF_BUFF_SIZE.3.gz
  94. man/man3/BL_SAM_BUFF_DISCARDED_ALIGNMENTS.3.gz
  95. man/man3/BL_SAM_BUFF_DISCARDED_SCORE_SUM.3.gz
  96. man/man3/BL_SAM_BUFF_DISCARDED_TRAILING.3.gz
  97. man/man3/BL_SAM_BUFF_INC_DISCARDED_TRAILING.3.gz
  98. man/man3/BL_SAM_BUFF_INC_TOTAL_ALIGNMENTS.3.gz
  99. man/man3/BL_SAM_BUFF_INC_TRAILING_ALIGNMENTS.3.gz
  100. man/man3/BL_SAM_BUFF_MAPQ_HIGH.3.gz
  101. man/man3/BL_SAM_BUFF_MAPQ_LOW.3.gz
  102. man/man3/BL_SAM_BUFF_MAPQ_MIN.3.gz
  103. man/man3/BL_SAM_BUFF_MAPQ_SUM.3.gz
  104. man/man3/BL_SAM_BUFF_MAX_COUNT.3.gz
  105. man/man3/BL_SAM_BUFF_MAX_DISCARDED_SCORE.3.gz
  106. man/man3/BL_SAM_BUFF_MIN_DISCARDED_SCORE.3.gz
  107. man/man3/BL_SAM_BUFF_PREVIOUS_POS.3.gz
  108. man/man3/BL_SAM_BUFF_PREVIOUS_RNAME.3.gz
  109. man/man3/BL_SAM_BUFF_PREVIOUS_RNAME_AE.3.gz
  110. man/man3/BL_SAM_BUFF_READS_USED.3.gz
  111. man/man3/BL_SAM_BUFF_TOTAL_ALIGNMENTS.3.gz
  112. man/man3/BL_SAM_BUFF_TRAILING_ALIGNMENTS.3.gz
  113. man/man3/BL_SAM_BUFF_UNMAPPED_ALIGNMENTS.3.gz
  114. man/man3/BL_SAM_CIGAR.3.gz
  115. man/man3/BL_SAM_CIGAR_AE.3.gz
  116. man/man3/BL_SAM_FLAG.3.gz
  117. man/man3/BL_SAM_MAPQ.3.gz
  118. man/man3/BL_SAM_PNEXT.3.gz
  119. man/man3/BL_SAM_POS.3.gz
  120. man/man3/BL_SAM_QNAME.3.gz
  121. man/man3/BL_SAM_QNAME_AE.3.gz
  122. man/man3/BL_SAM_QUAL.3.gz
  123. man/man3/BL_SAM_QUAL_AE.3.gz
  124. man/man3/BL_SAM_QUAL_LEN.3.gz
  125. man/man3/BL_SAM_RNAME.3.gz
  126. man/man3/BL_SAM_RNAME_AE.3.gz
  127. man/man3/BL_SAM_RNEXT.3.gz
  128. man/man3/BL_SAM_RNEXT_AE.3.gz
  129. man/man3/BL_SAM_SEQ.3.gz
  130. man/man3/BL_SAM_SEQ_AE.3.gz
  131. man/man3/BL_SAM_SEQ_LEN.3.gz
  132. man/man3/BL_SAM_TLEN.3.gz
  133. man/man3/BL_VCF_ALT.3.gz
  134. man/man3/BL_VCF_ALT_AE.3.gz
  135. man/man3/BL_VCF_ALT_COUNT.3.gz
  136. man/man3/BL_VCF_CHROM.3.gz
  137. man/man3/BL_VCF_CHROM_AE.3.gz
  138. man/man3/BL_VCF_FILTER.3.gz
  139. man/man3/BL_VCF_FILTER_AE.3.gz
  140. man/man3/BL_VCF_FORMAT.3.gz
  141. man/man3/BL_VCF_FORMAT_AE.3.gz
  142. man/man3/BL_VCF_FORMAT_MAX.3.gz
  143. man/man3/BL_VCF_ID.3.gz
  144. man/man3/BL_VCF_ID_AE.3.gz
  145. man/man3/BL_VCF_INFO.3.gz
  146. man/man3/BL_VCF_INFO_AE.3.gz
  147. man/man3/BL_VCF_INFO_LEN.3.gz
  148. man/man3/BL_VCF_INFO_MAX.3.gz
  149. man/man3/BL_VCF_MULTI_SAMPLES.3.gz
  150. man/man3/BL_VCF_MULTI_SAMPLES_AE.3.gz
  151. man/man3/BL_VCF_OTHER_COUNT.3.gz
  152. man/man3/BL_VCF_PHREDS.3.gz
  153. man/man3/BL_VCF_PHREDS_AE.3.gz
  154. man/man3/BL_VCF_PHRED_BUFF_SIZE.3.gz
  155. man/man3/BL_VCF_PHRED_COUNT.3.gz
  156. man/man3/BL_VCF_POS.3.gz
  157. man/man3/BL_VCF_QUAL.3.gz
  158. man/man3/BL_VCF_QUAL_AE.3.gz
  159. man/man3/BL_VCF_REF.3.gz
  160. man/man3/BL_VCF_REF_AE.3.gz
  161. man/man3/BL_VCF_REF_COUNT.3.gz
  162. man/man3/BL_VCF_SAMPLE_MAX.3.gz
  163. man/man3/BL_VCF_SINGLE_SAMPLE.3.gz
  164. man/man3/BL_VCF_SINGLE_SAMPLE_AE.3.gz
  165. man/man3/biolibc.3.gz
  166. man/man3/bl_bed_check_order.3.gz
  167. man/man3/bl_bed_gff_cmp.3.gz
  168. man/man3/bl_bed_read.3.gz
  169. man/man3/bl_bed_set_block_count.3.gz
  170. man/man3/bl_bed_set_block_sizes.3.gz
  171. man/man3/bl_bed_set_block_sizes_ae.3.gz
  172. man/man3/bl_bed_set_block_sizes_cpy.3.gz
  173. man/man3/bl_bed_set_block_starts.3.gz
  174. man/man3/bl_bed_set_block_starts_ae.3.gz
  175. man/man3/bl_bed_set_block_starts_cpy.3.gz
  176. man/man3/bl_bed_set_chrom_ae.3.gz
  177. man/man3/bl_bed_set_chrom_cpy.3.gz
  178. man/man3/bl_bed_set_chrom_end.3.gz
  179. man/man3/bl_bed_set_chrom_start.3.gz
  180. man/man3/bl_bed_set_fields.3.gz
  181. man/man3/bl_bed_set_item_rgb_ae.3.gz
  182. man/man3/bl_bed_set_item_rgb_cpy.3.gz
  183. man/man3/bl_bed_set_name_ae.3.gz
  184. man/man3/bl_bed_set_name_cpy.3.gz
  185. man/man3/bl_bed_set_score.3.gz
  186. man/man3/bl_bed_set_strand.3.gz
  187. man/man3/bl_bed_set_thick_end.3.gz
  188. man/man3/bl_bed_set_thick_start.3.gz
  189. man/man3/bl_bed_skip_header.3.gz
  190. man/man3/bl_bed_write.3.gz
  191. man/man3/bl_chrom_name_cmp.3.gz
  192. man/man3/bl_fasta_free.3.gz
  193. man/man3/bl_fasta_init.3.gz
  194. man/man3/bl_fasta_read.3.gz
  195. man/man3/bl_fasta_set_desc.3.gz
  196. man/man3/bl_fasta_set_desc_ae.3.gz
  197. man/man3/bl_fasta_set_desc_array_size.3.gz
  198. man/man3/bl_fasta_set_desc_cpy.3.gz
  199. man/man3/bl_fasta_set_desc_len.3.gz
  200. man/man3/bl_fasta_set_seq.3.gz
  201. man/man3/bl_fasta_set_seq_ae.3.gz
  202. man/man3/bl_fasta_set_seq_array_size.3.gz
  203. man/man3/bl_fasta_set_seq_cpy.3.gz
  204. man/man3/bl_fasta_set_seq_len.3.gz
  205. man/man3/bl_fasta_write.3.gz
  206. man/man3/bl_fastq_free.3.gz
  207. man/man3/bl_fastq_init.3.gz
  208. man/man3/bl_fastq_read.3.gz
  209. man/man3/bl_fastq_set_desc.3.gz
  210. man/man3/bl_fastq_set_desc_ae.3.gz
  211. man/man3/bl_fastq_set_desc_array_size.3.gz
  212. man/man3/bl_fastq_set_desc_cpy.3.gz
  213. man/man3/bl_fastq_set_desc_len.3.gz
  214. man/man3/bl_fastq_set_plus.3.gz
  215. man/man3/bl_fastq_set_plus_ae.3.gz
  216. man/man3/bl_fastq_set_plus_array_size.3.gz
  217. man/man3/bl_fastq_set_plus_cpy.3.gz
  218. man/man3/bl_fastq_set_plus_len.3.gz
  219. man/man3/bl_fastq_set_qual.3.gz
  220. man/man3/bl_fastq_set_qual_ae.3.gz
  221. man/man3/bl_fastq_set_qual_array_size.3.gz
  222. man/man3/bl_fastq_set_qual_cpy.3.gz
  223. man/man3/bl_fastq_set_qual_len.3.gz
  224. man/man3/bl_fastq_set_seq.3.gz
  225. man/man3/bl_fastq_set_seq_ae.3.gz
  226. man/man3/bl_fastq_set_seq_array_size.3.gz
  227. man/man3/bl_fastq_set_seq_cpy.3.gz
  228. man/man3/bl_fastq_set_seq_len.3.gz
  229. man/man3/bl_fastq_write.3.gz
  230. man/man3/bl_fastx_desc.3.gz
  231. man/man3/bl_fastx_desc_len.3.gz
  232. man/man3/bl_fastx_free.3.gz
  233. man/man3/bl_fastx_init.3.gz
  234. man/man3/bl_fastx_plus.3.gz
  235. man/man3/bl_fastx_plus_len.3.gz
  236. man/man3/bl_fastx_qual.3.gz
  237. man/man3/bl_fastx_qual_len.3.gz
  238. man/man3/bl_fastx_read.3.gz
  239. man/man3/bl_fastx_seq.3.gz
  240. man/man3/bl_fastx_seq_len.3.gz
  241. man/man3/bl_fastx_write.3.gz
  242. man/man3/bl_gff_read.3.gz
  243. man/man3/bl_gff_set_attributes.3.gz
  244. man/man3/bl_gff_set_attributes_ae.3.gz
  245. man/man3/bl_gff_set_attributes_cpy.3.gz
  246. man/man3/bl_gff_set_end.3.gz
  247. man/man3/bl_gff_set_feature_ae.3.gz
  248. man/man3/bl_gff_set_feature_cpy.3.gz
  249. man/man3/bl_gff_set_feature_id.3.gz
  250. man/man3/bl_gff_set_feature_id_ae.3.gz
  251. man/man3/bl_gff_set_feature_id_cpy.3.gz
  252. man/man3/bl_gff_set_gene_name.3.gz
  253. man/man3/bl_gff_set_gene_name_ae.3.gz
  254. man/man3/bl_gff_set_gene_name_cpy.3.gz
  255. man/man3/bl_gff_set_phase.3.gz
  256. man/man3/bl_gff_set_score.3.gz
  257. man/man3/bl_gff_set_sequence_ae.3.gz
  258. man/man3/bl_gff_set_sequence_cpy.3.gz
  259. man/man3/bl_gff_set_source_ae.3.gz
  260. man/man3/bl_gff_set_source_cpy.3.gz
  261. man/man3/bl_gff_set_start.3.gz
  262. man/man3/bl_gff_set_strand.3.gz
  263. man/man3/bl_gff_skip_header.3.gz
  264. man/man3/bl_gff_to_bed.3.gz
  265. man/man3/bl_gff_write.3.gz
  266. man/man3/bl_next_start_codon.3.gz
  267. man/man3/bl_next_stop_codon.3.gz
  268. man/man3/bl_overlap_print.3.gz
  269. man/man3/bl_overlap_set_all.3.gz
  270. man/man3/bl_overlap_set_feature1_len.3.gz
  271. man/man3/bl_overlap_set_feature2_len.3.gz
  272. man/man3/bl_overlap_set_overlap_end.3.gz
  273. man/man3/bl_overlap_set_overlap_len.3.gz
  274. man/man3/bl_overlap_set_overlap_start.3.gz
  275. man/man3/bl_pos_list_add_position.3.gz
  276. man/man3/bl_pos_list_allocate.3.gz
  277. man/man3/bl_pos_list_free.3.gz
  278. man/man3/bl_pos_list_from_csv.3.gz
  279. man/man3/bl_pos_list_set_array_size.3.gz
  280. man/man3/bl_pos_list_set_count.3.gz
  281. man/man3/bl_pos_list_set_positions.3.gz
  282. man/man3/bl_pos_list_set_positions_ae.3.gz
  283. man/man3/bl_pos_list_set_positions_cpy.3.gz
  284. man/man3/bl_pos_list_sort.3.gz
  285. man/man3/bl_sam_buff_add_alignment.3.gz
  286. man/man3/bl_sam_buff_alignment_ok.3.gz
  287. man/man3/bl_sam_buff_check_order.3.gz
  288. man/man3/bl_sam_buff_free_alignment.3.gz
  289. man/man3/bl_sam_buff_init.3.gz
  290. man/man3/bl_sam_buff_out_of_order.3.gz
  291. man/man3/bl_sam_buff_set_alignments.3.gz
  292. man/man3/bl_sam_buff_set_alignments_ae.3.gz
  293. man/man3/bl_sam_buff_set_alignments_cpy.3.gz
  294. man/man3/bl_sam_buff_set_buff_size.3.gz
  295. man/man3/bl_sam_buff_set_buffered_count.3.gz
  296. man/man3/bl_sam_buff_set_discarded_alignments.3.gz
  297. man/man3/bl_sam_buff_set_discarded_score_sum.3.gz
  298. man/man3/bl_sam_buff_set_discarded_trailing.3.gz
  299. man/man3/bl_sam_buff_set_mapq_high.3.gz
  300. man/man3/bl_sam_buff_set_mapq_low.3.gz
  301. man/man3/bl_sam_buff_set_mapq_min.3.gz
  302. man/man3/bl_sam_buff_set_mapq_sum.3.gz
  303. man/man3/bl_sam_buff_set_max_count.3.gz
  304. man/man3/bl_sam_buff_set_max_discarded_score.3.gz
  305. man/man3/bl_sam_buff_set_min_discarded_score.3.gz
  306. man/man3/bl_sam_buff_set_previous_pos.3.gz
  307. man/man3/bl_sam_buff_set_previous_rname_ae.3.gz
  308. man/man3/bl_sam_buff_set_previous_rname_cpy.3.gz
  309. man/man3/bl_sam_buff_set_reads_used.3.gz
  310. man/man3/bl_sam_buff_set_total_alignments.3.gz
  311. man/man3/bl_sam_buff_set_trailing_alignments.3.gz
  312. man/man3/bl_sam_buff_set_unmapped_alignments.3.gz
  313. man/man3/bl_sam_buff_shift.3.gz
  314. man/man3/bl_sam_copy.3.gz
  315. man/man3/bl_sam_free.3.gz
  316. man/man3/bl_sam_init.3.gz
  317. man/man3/bl_sam_read.3.gz
  318. man/man3/bl_sam_set_cigar_ae.3.gz
  319. man/man3/bl_sam_set_cigar_cpy.3.gz
  320. man/man3/bl_sam_set_flag.3.gz
  321. man/man3/bl_sam_set_mapq.3.gz
  322. man/man3/bl_sam_set_pnext.3.gz
  323. man/man3/bl_sam_set_pos.3.gz
  324. man/man3/bl_sam_set_qname_ae.3.gz
  325. man/man3/bl_sam_set_qname_cpy.3.gz
  326. man/man3/bl_sam_set_qual.3.gz
  327. man/man3/bl_sam_set_qual_ae.3.gz
  328. man/man3/bl_sam_set_qual_cpy.3.gz
  329. man/man3/bl_sam_set_qual_len.3.gz
  330. man/man3/bl_sam_set_rname_ae.3.gz
  331. man/man3/bl_sam_set_rname_cpy.3.gz
  332. man/man3/bl_sam_set_rnext_ae.3.gz
  333. man/man3/bl_sam_set_rnext_cpy.3.gz
  334. man/man3/bl_sam_set_seq.3.gz
  335. man/man3/bl_sam_set_seq_ae.3.gz
  336. man/man3/bl_sam_set_seq_cpy.3.gz
  337. man/man3/bl_sam_set_seq_len.3.gz
  338. man/man3/bl_sam_set_tlen.3.gz
  339. man/man3/bl_sam_write.3.gz
  340. man/man3/bl_vcf_call_downstream_of_alignment.3.gz
  341. man/man3/bl_vcf_call_in_alignment.3.gz
  342. man/man3/bl_vcf_call_out_of_order.3.gz
  343. man/man3/bl_vcf_free.3.gz
  344. man/man3/bl_vcf_get_sample_ids.3.gz
  345. man/man3/bl_vcf_init.3.gz
  346. man/man3/bl_vcf_parse_field_spec.3.gz
  347. man/man3/bl_vcf_read_ss_call.3.gz
  348. man/man3/bl_vcf_read_static_fields.3.gz
  349. man/man3/bl_vcf_sample_alloc.3.gz
  350. man/man3/bl_vcf_set_alt_ae.3.gz
  351. man/man3/bl_vcf_set_alt_count.3.gz
  352. man/man3/bl_vcf_set_alt_cpy.3.gz
  353. man/man3/bl_vcf_set_chrom_ae.3.gz
  354. man/man3/bl_vcf_set_chrom_cpy.3.gz
  355. man/man3/bl_vcf_set_filter_ae.3.gz
  356. man/man3/bl_vcf_set_filter_cpy.3.gz
  357. man/man3/bl_vcf_set_format.3.gz
  358. man/man3/bl_vcf_set_format_ae.3.gz
  359. man/man3/bl_vcf_set_format_cpy.3.gz
  360. man/man3/bl_vcf_set_format_max.3.gz
  361. man/man3/bl_vcf_set_id_ae.3.gz
  362. man/man3/bl_vcf_set_id_cpy.3.gz
  363. man/man3/bl_vcf_set_info.3.gz
  364. man/man3/bl_vcf_set_info_ae.3.gz
  365. man/man3/bl_vcf_set_info_cpy.3.gz
  366. man/man3/bl_vcf_set_info_len.3.gz
  367. man/man3/bl_vcf_set_info_max.3.gz
  368. man/man3/bl_vcf_set_multi_samples.3.gz
  369. man/man3/bl_vcf_set_multi_samples_ae.3.gz
  370. man/man3/bl_vcf_set_multi_samples_cpy.3.gz
  371. man/man3/bl_vcf_set_other_count.3.gz
  372. man/man3/bl_vcf_set_phred_buff_size.3.gz
  373. man/man3/bl_vcf_set_phred_count.3.gz
  374. man/man3/bl_vcf_set_phreds.3.gz
  375. man/man3/bl_vcf_set_phreds_ae.3.gz
  376. man/man3/bl_vcf_set_phreds_cpy.3.gz
  377. man/man3/bl_vcf_set_pos.3.gz
  378. man/man3/bl_vcf_set_qual_ae.3.gz
  379. man/man3/bl_vcf_set_qual_cpy.3.gz
  380. man/man3/bl_vcf_set_ref_ae.3.gz
  381. man/man3/bl_vcf_set_ref_count.3.gz
  382. man/man3/bl_vcf_set_ref_cpy.3.gz
  383. man/man3/bl_vcf_set_sample_max.3.gz
  384. man/man3/bl_vcf_set_single_sample.3.gz
  385. man/man3/bl_vcf_set_single_sample_ae.3.gz
  386. man/man3/bl_vcf_set_single_sample_cpy.3.gz
  387. man/man3/bl_vcf_skip_meta_data.3.gz
  388. man/man3/bl_vcf_write_ss_call.3.gz
  389. man/man3/bl_vcf_write_static_fields.3.gz
  390. @owner
  391. @group
  392. @mode
Collapse this list.
Dependency lines:
  • For RUN/BUILD depends:
    • biolibc>0:biology/biolibc
  • For LIB depends:
    • libbiolibc.so:biology/biolibc
To install the port:
cd /usr/ports/biology/biolibc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/biolibc
  • pkg install biolibc
PKGNAME: biolibc
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
biolibc
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.2.0.110.1.3
FreeBSD:11:armv6--
FreeBSD:11:i3860.2.0.110.1.3
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.2.1
FreeBSD:12:amd640.2.10.2.1
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.2.10.2.1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-0.1.1
FreeBSD:13:aarch640.2.10.2.1
FreeBSD:13:amd640.2.10.2.1
FreeBSD:13:armv6-0.1.1
FreeBSD:13:armv7-0.2.1
FreeBSD:13:i3860.2.10.2.1
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-0.1.3
FreeBSD:14:aarch640.2.1-
FreeBSD:14:amd640.2.1-
FreeBSD:14:armv60.1.1-
FreeBSD:14:armv70.1.1-
FreeBSD:14:i3860.2.1-
FreeBSD:14:mips--
FreeBSD:14:mips640.2.1-
FreeBSD:14:powerpc640.1.1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Library dependencies:
  1. libxtend.so : devel/libxtend
This port is required by:
for Libraries
  1. biology/ad2vcf
  2. biology/biolibc-tools
  3. biology/peak-classifier
  4. biology/vcf-split
  5. biology/vcf2hap

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/auerlab/biolibc/tar.gz/0.2.1?dummy=/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
14 Dec 2021 19:45:31
 files touched by this commit commit hash:0646ba904fbe551f21b50f2d7aa5b0b550c4176f  0.2.1
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.1

Add orf.c with start/stop codon locators
Standardize BED and GFF APIs
Implement VCF input filtering
Eliminate mutator macros mirroring mutator functions
Numerous minor bug fixes and enhancements

Changes: https://github.com/auerlab/biolibc/releases/tag/0.2.1
17 Sep 2021 16:33:57
 files touched by this commit commit hash:623975bcb451d12a01eea7a8a822539d963c381f  0.2.0.11
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.0.11

Regenerate man pages with improved auto-c2man
Adds missing return value sections and improves formatting
02 Sep 2021 23:10:21
 files touched by this commit commit hash:df5931308708667fbd06a1fa8f11d763195af1bf  0.2.0.1
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.0.1

Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks
28 Aug 2021 01:21:02
 files touched by this commit commit hash:9876430959ae7d730e71ada0c6319e8deede88bc  0.2.0
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.0

Major API overhaul
New classes for FASTA and FASTQ
Generate accessor and mutator functions for all classes
Generate man pages for all functions and macros
Export delimiter-separated-value class to libxtend
11 Jun 2021 15:38:27
 files touched by this commit commit hash:45da218542662de740486dbc6a5aa79a0e6d00ea  0.1.3
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Remove comment used to silence portlint
11 Jun 2021 15:05:18
 files touched by this commit commit hash:495634f580bdb5bf7020c53ef98d348ad682bb86  0.1.3
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.1.3

Changes:        https://github.com/auerlab/biolibc/releases
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.1.1
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.1.1
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
21 Mar 2021 15:10:17
Original commit files touched by this commit Revision:568921  0.1.1
jwb search for other commits by this committer
biology/biolibc: Low-level high-performance bioinformatics library

Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data.  Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications.  These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.

Number of commits found: 9