Fastq-trim is a lightening fast read trimming tool for QA of
DNA and RNA reads prior to analyses such as RNA-Seq. it runs
in a fraction of the time required by popular trimmers and uses
only a few megabytes of RAM, so it will run almost entirely in
cache. The design supports adding any number of alignment
functions, so it can be easily adapted to any trimming needs.
biology/fastq-trim: Update to 0.1.3
fastq-scum: Add zstd and lz4 support
Add low_qual_base_count update for paired end reads
Clean up and expand final output format
A few other minor improvements
Updates for latest libxtend API
Improvements to test script
Changes: https://github.com/auerlab/fastq-trim/releases
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
biology/fastq-trim: Update to 0.1.1.2
Replace crash with run with no arguments with help msg
fastq-vis -> fastq-scum (better name for contamination viewer)
biology/fastq-trim: Lightening fast sequence read trimmer
Fastq-trim is a lightening fast read trimming tool for QA of
DNA and RNA reads prior to analyses such as RNA-Seq.
