| Port details |
- fastq-trim Lightening fast sequence read trimmer
- 0.1.1.4 biology
 =0      Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2022-03-19 12:27:08
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- License: BSD2CLAUSE
- Description:
- Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA
reads prior to analyses such as RNA-Seq.
 –  –  –  –  - pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- fastq-trim>0:biology/fastq-trim
- To install the port:
- cd /usr/ports/biology/fastq-trim/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/fastq-trim
- pkg install fastq-trim
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: fastq-trim
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1647897438
SHA256 (outpaddling-fastq-trim-0.1.1-4-g7e3c5ff_GH0.tar.gz) = c2dec668dd1946d62b3f7110d243ac9722af8730dbd3919c1e62e01428af3794
SIZE (outpaddling-fastq-trim-0.1.1-4-g7e3c5ff_GH0.tar.gz) = 30070
- Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Library dependencies:
-
- libbiolibc.so : biology/biolibc
- libxtend.so : devel/libxtend
- There are no ports dependent upon this port
- Configuration Options:
- No options to configure
- Options name:
- biology_fastq-trim
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 5
| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.1.1.4
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
0.1.1.4
21 Mar 2022 21:19:36
|
Jason W. Bacon (jwb) |
biology/fastq-trim: Update to 0.1.1.4
Forgot to update fastq-vis -> fastq-scum in docs in previous update |
0.1.1.2
21 Mar 2022 20:37:43
|
Jason W. Bacon (jwb) |
biology/fastq-trim: Update to 0.1.1.2
Replace crash with run with no arguments with help msg
fastq-vis -> fastq-scum (better name for contamination viewer) |
0.1.1
19 Mar 2022 12:25:58
|
Jason W. Bacon (jwb) |
biology/fastq-trim: Lightening fast sequence read trimmer
Fastq-trim is a lightening fast read trimming tool for QA of
DNA and RNA reads prior to analyses such as RNA-Seq. |
Number of commits found: 5
|
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