notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Port details
vcf2hap Generate .hap file from VCF for haplohseq
0.1.3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.2Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-03-23 16:32:36
Last Update: 2021-06-11 15:40:11
Commit Hash: 46f77e9
License: BSD2CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/vcf2hap
  2. man/man1/vcf2hap.1.gz
  3. /usr/local/share/licenses/vcf2hap-0.1.3/catalog.mk
  4. /usr/local/share/licenses/vcf2hap-0.1.3/LICENSE
  5. /usr/local/share/licenses/vcf2hap-0.1.3/BSD2CLAUSE
Collapse this list.
Dependency lines:
  • vcf2hap>0:biology/vcf2hap
To install the port: cd /usr/ports/biology/vcf2hap/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/vcf2hap
  • pkg install vcf2hap
PKGNAME: vcf2hap
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
vcf2hap
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.1.30.1.2
FreeBSD:11:armv6--
FreeBSD:11:i3860.1.30.1.2
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.1.2
FreeBSD:12:amd640.1.30.1.2
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.1.30.1.2
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-0.1.2
FreeBSD:13:aarch64-0.1.2
FreeBSD:13:amd640.1.30.1.2
FreeBSD:13:armv6-0.1.2
FreeBSD:13:armv7-0.1.2
FreeBSD:13:i3860.1.30.1.2
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-0.1.2
FreeBSD:14:aarch640.1.3-
FreeBSD:14:amd640.1.3-
FreeBSD:14:armv60.1.2-
FreeBSD:14:armv70.1.2-
FreeBSD:14:i3860.1.3-
FreeBSD:14:mips--
FreeBSD:14:mips640.1.3-
FreeBSD:14:powerpc640.1.2-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Library dependencies:
  1. libbiolibc.so : biology/biolibc
  2. libxtend.so : devel/libxtend
There are no ports dependent upon this port

Configuration Options:
Options name:
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/auerlab/vcf2hap/tar.gz/0.1.3?dummy=/
Collapse this list.

Number of commits found: 5

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
11 Jun 2021 15:40:11
 files touched by this commit commit hash:46f77e921f4ebecdd3f1c2cf9edf0ef1d0903c46  0.1.3
jwb search for other commits by this committer
biology/vcf2hap: Remove comment used to silence portlint
11 Jun 2021 15:05:19
 files touched by this commit commit hash:2d3f4b8c54845e82ce500cdca0386bc5c1aa7e8b  0.1.3
jwb search for other commits by this committer
biology/vcf2hap: Update to 0.1.3

Updates for new biolibc API

Changes:        https://github.com/auerlab/vcf2hap/releases
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.1.2
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.1.2
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
23 Mar 2021 16:32:29
Original commit files touched by this commit Revision:569036  0.1.2
jwb search for other commits by this committer
biology/vcf2hap: Generate .hap file from VCF for haplohseq

vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
is required by haplohseq.  vcf2hap is extremely fast and requires a trivial
amount of memory regardless of the size of the VCF file.

Number of commits found: 5