| Port details on branch 2026Q3 |
- cd-hit Clustering and comparing protein or nucleotide sequences
- 4.8.1_3 biology
 =0      4.8.1_3Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2015-09-19 11:17:00
- Last Update: 2023-08-12 01:37:47
- Commit Hash: 6c5416c
- License: GPLv2
- WWW:
- http://weizhong-lab.ucsd.edu/cd-hit/
- Description:
- CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/cd-hit/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/cd-hit
- pkg install cd-hit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: cd-hit
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1552053543
SHA256 (weizhongli-cdhit-V4.8.1_GH0.tar.gz) = f8bc3cdd7aebb432fcd35eed0093e7a6413f1e36bbd2a837ebc06e57cdb20b70
SIZE (weizhongli-cdhit-V4.8.1_GH0.tar.gz) = 945639
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- This port is required by:
- for Run
-
- biology/biostar-tools
- biology/ddocent
- biology/p5-transdecoder
Configuration Options:- No options to configure
- Options name:
- biology_cd-hit
- USES:
- gmake shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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