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Port details
clustalw Multiple alignment program for DNA or proteins
2.1_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.1_2Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-07-10 00:17:41
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
License: LGPL3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/clustalw
  2. bin/clustalw2
  3. /usr/local/share/licenses/clustalw-2.1_2/catalog.mk
  4. /usr/local/share/licenses/clustalw-2.1_2/LICENSE
  5. /usr/local/share/licenses/clustalw-2.1_2/LGPL3
Collapse this list.
Dependency lines:
  • clustalw>0:biology/clustalw
To install the port:
cd /usr/ports/biology/clustalw/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/clustalw
  • pkg install clustalw
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: clustalw
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
clustalw
ABIlatestquarterly
FreeBSD:11:aarch642.1_22.1_2
FreeBSD:11:amd642.1_22.1_2
FreeBSD:11:armv6-2.1_2
FreeBSD:11:i3862.1_22.1_2
FreeBSD:11:mips--
FreeBSD:11:mips64-2.1_2
FreeBSD:12:aarch642.1_22.1_2
FreeBSD:12:amd642.1_22.1_2
FreeBSD:12:armv62.1_22.1_2
FreeBSD:12:armv72.1_22.1_2
FreeBSD:12:i3862.1_22.1_2
FreeBSD:12:mips--
FreeBSD:12:mips642.1_22.1_2
FreeBSD:12:powerpc64-2.1_2
FreeBSD:13:aarch642.1_22.1_2
FreeBSD:13:amd642.1_22.1_2
FreeBSD:13:armv62.1_22.1_2
FreeBSD:13:armv72.1_22.1_2
FreeBSD:13:i3862.1_22.1_2
FreeBSD:13:mips--
FreeBSD:13:mips642.1_22.1_2
FreeBSD:13:powerpc642.1_22.1_2
FreeBSD:14:aarch642.1_2-
FreeBSD:14:amd642.1_2-
FreeBSD:14:armv62.1_2-
FreeBSD:14:armv72.1_2-
FreeBSD:14:i3862.1_2-
FreeBSD:14:mips--
FreeBSD:14:mips642.1_2-
FreeBSD:14:powerpc642.1_2-
 

This port is required by:
for Build
  1. biology/emboss
for Run
  1. science/py-MDAnalysis

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. biology/t_coffee*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.1/
  2. http://www.clustal.org/download/2.1/
Collapse this list.

Number of commits found: 30

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.1_2
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
21 May 2018 01:13:40
Original commit files touched by this commit Revision:470494  2.1_2
jwb search for other commits by this committer
biology/clustalw: Fix license, take maintainership

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15503
25 May 2016 15:43:34
Original commit files touched by this commit Revision:415839  2.1_1
mat search for other commits by this committer
Remove useless WRKSRC definitions.

While there, correct DEV_WARNINGS when they occur.

Sponsored by:	Absolight
19 May 2016 10:21:25
Original commit files touched by this commit Revision:415498  2.1_1
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
14 May 2015 10:15:09
Original commit files touched by this commit Revision:386312  2.1_1
mat search for other commits by this committer
MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight
26 May 2014 02:33:39
Original commit files touched by this commit Revision:355274  2.1_1
eadler search for other commits by this committer
Multiple ports: reset maintainers
	Maintainers for these ports have been notified on 5 separate occasions
	over the course of several months about pending actions required.

	We really appreciate the time and effort you put in to maintain
	these ports.

	If you are still interested in helping to maintain these ports just
	reply to me or file a PR and I will happily assign the port to you
	again.

Approved by:	portmgr (implicit)
20 Dec 2013 15:29:07
Original commit files touched by this commit Revision:337026  2.1_1
wen search for other commits by this committer
- Fix build with clang/libc++.
- Support staging.

PR:		184974
Submitted by:	tijl@
20 Sep 2013 15:55:44
Original commit files touched by this commit Revision:327709  2.1_1
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
11 Aug 2011 19:20:17
Original commit files touched by this commit   2.1_1  Sanity Test Failure
kwm search for other commits by this committer
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:             ports/159624
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
21 Dec 2010 00:12:22
Original commit files touched by this commit   2.1_1
wen search for other commits by this committer
- Fix fetch

Reported by:    QAT@
22 Nov 2010 00:15:25
Original commit files touched by this commit   2.1
wen search for other commits by this committer
- Update to 2.1
27 Dec 2009 03:05:04
Original commit files touched by this commit   2.0.12
wen search for other commits by this committer
- Fix fetch error
29 Nov 2009 01:16:36
Original commit files touched by this commit   2.0.12
wen search for other commits by this committer
- Update to 2.0.12
- Update my mail address to FreeBSD
29 Apr 2008 12:58:52
Original commit files touched by this commit   2.0.6
miwi search for other commits by this committer
- Update to 2.0.6
- Pass maintainership to submitter

PR:             123193
Submitted by:   Wen heping <wenheping@gmail.com>
19 Mar 2008 14:01:13
Original commit files touched by this commit   2.0.5
jadawin search for other commits by this committer
- Update to 2.0.5
- Add RESTRICTED due to non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)
19 Mar 2008 13:31:52
Original commit files touched by this commit   2.0.3_1
jadawin search for other commits by this committer
- Update to version 2.0.5
- Add RESTRICTED due to a non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)
26 Feb 2008 19:53:40
Original commit files touched by this commit   2.0.3_1
pav search for other commits by this committer
- Restore clustalw symlink, other ports rely on it

Reported by:    pointyhat
Pointy hat to:  pav
25 Feb 2008 22:05:06
Original commit files touched by this commit   2.0.3
pav search for other commits by this committer
- Update to 2.0.3
15 Dec 2007 18:47:00
Original commit files touched by this commit   2.0
pav search for other commits by this committer
- Update to 2.0

PR:             ports/117713
Submitted by:   Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
11 Mar 2007 03:20:27
Original commit files touched by this commit   1.83
linimon search for other commits by this committer
Reset dbader@eece.unm.edu due to maintainer-timeout.  While here, fix fetch.
22 Jan 2006 08:20:34
Original commit files touched by this commit   1.83
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
28 Aug 2003 04:51:02
Original commit files touched by this commit   1.83
krion search for other commits by this committer
- Add an end-of-string to each line of the input
  when parsing the input files

PR:             56043
Submitted by:   maintainer
15 Feb 2003 18:43:14
Original commit files touched by this commit   1.83
naddy search for other commits by this committer
Update to 1.83.

PR:             48264
Submitted by:   David A. Bader <dbader@eece.unm.edu>
27 Mar 2002 14:01:57
Original commit files touched by this commit   1.82_2
wjv search for other commits by this committer
- Add a new patch
- Bump $PORTREVISION

PR:             36206
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
22 Mar 2002 08:23:23
Original commit files touched by this commit   1.82_1
wjv search for other commits by this committer
- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
  FreeBSD-bio list

PR:             36169
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
10 Jul 2001 14:54:22
 files touched by this commit commit hash:fp1.16061@dev.null.freshports.org
sobomax search for other commits by this committer
${PREFIX}/share/${PORTNAME} --> ${DATADIR}    
03 Jul 2001 09:10:29
 files touched by this commit commit hash:fp1.15734@dev.null.freshports.org
wjv search for other commits by this committer
Update to version 1.82    
08 Oct 2000 00:23:30
 files touched by this commit commit hash:fp1.4706@dev.null.freshports.org
asami search for other commits by this committer
Convert category biology to new layout.  
03 Oct 2000 02:10:19
 files touched by this commit commit hash:fp1.4550@dev.null.freshports.org
jeh search for other commits by this committer
- Support CC/CFLAGS/PREFIX properly   - gets() -> fgets()   - Add WWW: line into
pkg/DESCR    
10 Jul 2000 04:17:41
 files touched by this commit commit hash:fp1.1754@dev.null.freshports.org
steve search for other commits by this committer
Adding clustalw version 1.81.   A CLUSTAL W Multiple Sequence Alignment Program.
   

Number of commits found: 30