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Port details
py-MDAnalysis Python library to analyze molecular dynamics trajectories
0.19.2_2 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.19.2_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-05-14 00:15:59
Last Update: 2021-05-10 20:13:20
Commit Hash: 1d44af5
Also Listed In: python
License: GPLv2
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}MDAnalysis>0:science/py-MDAnalysis@${PY_FLAVOR}
To install the port: cd /usr/ports/science/py-MDAnalysis/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-MDAnalysis
  • pkg install py38-MDAnalysis
NOTE: This is a Python port. Instead of py38-MDAnalysis listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-MDAnalysis
Package flavors (<flavor>: <package>)
  • py38: py38-MDAnalysis
distinfo:
Packages (timestamps in pop-ups are UTC):
py27-MDAnalysis
ABIlatestquarterly
FreeBSD:11:aarch640.18.0-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch640.18.0-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py36-MDAnalysis
ABIlatestquarterly
FreeBSD:11:aarch640.18.0-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch640.18.0-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-MDAnalysis
ABIlatestquarterly
FreeBSD:11:aarch64-0.19.2_2
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch640.19.2_2-
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc640.19.2_2-
 
py38-MDAnalysis
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.19.2_20.19.2_2
FreeBSD:11:armv6--
FreeBSD:11:i3860.19.2_20.19.2_2
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-0.19.2_2
FreeBSD:12:amd640.19.2_20.19.2_2
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.19.2_20.19.2_2
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-0.19.2_2
FreeBSD:13:amd640.19.2_20.19.2_2
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3860.19.2_20.19.2_2
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch640.19.2_2-
FreeBSD:14:amd640.19.2_2-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3860.19.2_2-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  2. py38-setuptools>0 : devel/py-setuptools@py38
  3. python3.8 : lang/python38
Runtime dependencies:
  1. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  2. py38-biopython>=1.71 : biology/py-biopython@py38
  3. py38-duecredit>0 : textproc/py-duecredit@py38
  4. py38-GridDataFormats>=0.4.0 : math/py-GridDataFormats@py38
  5. py38-gsd>=1.4.0 : science/py-gsd@py38
  6. py38-joblib>0 : devel/py-joblib@py38
  7. py38-matplotlib>=1.5.1 : math/py-matplotlib@py38
  8. py38-mmtf-python>=1.0.0 : science/py-mmtf-python@py38
  9. py38-mock>0 : devel/py-mock@py38
  10. py38-networkx>=1.0 : math/py-networkx@py38
  11. py38-scipy>=1.0.0 : science/py-scipy@py38
  12. py38-six>=1.4.0 : devel/py-six@py38
  13. py38-setuptools>0 : devel/py-setuptools@py38
  14. python3.8 : lang/python38
This port is required by:
for Run
  1. science/py-MDAnalysisTests

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/M/MDAnalysis/
  2. https://pypi.org/packages/source/M/MDAnalysis/
Collapse this list.

Number of commits found: 11

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 May 2021 20:13:20
 files touched by this commit commit hash:1d44af58980136b882d146f21d8776943a14c5eb  0.19.2_2
thierry search for other commits by this committer
math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.19.2_2
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.19.2_2
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
13 Jun 2020 15:05:45
Original commit files touched by this commit Revision:538676  0.19.2_2
antoine search for other commits by this committer
Unbreak bulk -a
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  0.19.2_2
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
29 Jun 2019 10:28:48
Original commit files touched by this commit Revision:505343  0.19.2_1
pkubaj search for other commits by this committer
science/py-MDAnalysis: fix build

Add USES=compiler:c++11-lang to fix:
cc1plus: error: unrecognized command line option "-std=c++11"

Approved by:	mentors (implicit approval)
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  0.19.2_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
11 Nov 2018 22:33:50
Original commit files touched by this commit Revision:484782  0.19.2
yuri search for other commits by this committer
science/py-MDAnalysis: Update 0.19.0 -> 0.19.2

Reported by:	portscout
12 Oct 2018 01:15:43
Original commit files touched by this commit Revision:481865  0.19.0
yuri search for other commits by this committer
science/py-MDAnalysis: Update 0.18.0 -> 0.19.0

Reported by:	portscout
20 Jun 2018 17:05:44
Original commit files touched by this commit Revision:472884  0.18.0
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
14 May 2018 00:15:32
Original commit files touched by this commit Revision:469841  0.18.0
yuri search for other commits by this committer
New port: science/py-MDAnalysis: Python library to analyze molecular dynamics
trajectories

Number of commits found: 11