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We just rebooted with several updates: * new HMTLify code * no port maintainer is now highly visible (e.g. https://freshports.org/security/sssd/) * fixed search logic error when using plain/ text details at https://github.com/FreshPorts/freshports/releases/tag/2.2.34
Port details
clustalw Multiple alignment program for DNA or proteins
2.1_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2000-07-10 00:17:41
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: LGPL3
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/clustalw
  2. bin/clustalw2
  3. /usr/local/share/licenses/clustalw-2.1_2/catalog.mk
  4. /usr/local/share/licenses/clustalw-2.1_2/LICENSE
  5. /usr/local/share/licenses/clustalw-2.1_2/LGPL3
Collapse this list.
Dependency lines:
  • clustalw>0:biology/clustalw
To install the port:
cd /usr/ports/biology/clustalw/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/clustalw
  • pkg install clustalw
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: clustalw
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
clustalw
ABIlatestquarterly
FreeBSD:11:aarch642.1_22.1_2
FreeBSD:11:amd642.1_22.1_2
FreeBSD:11:armv6pkg-fallout2.1_2
FreeBSD:11:i3862.1_22.1_2
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-fallout2.1_2
FreeBSD:12:aarch642.1_22.1_2
FreeBSD:12:amd642.1_22.1_2
FreeBSD:12:armv62.1_22.1_2
FreeBSD:12:armv72.1_22.1_2
FreeBSD:12:i3862.1_22.1_2
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips642.1_22.1_2
FreeBSD:12:powerpc64pkg-fallout2.1_2
FreeBSD:13:aarch642.1_22.1_2
FreeBSD:13:amd642.1_22.1_2
FreeBSD:13:armv62.1_22.1_2
FreeBSD:13:armv72.1_22.1_2
FreeBSD:13:i3862.1_22.1_2
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips642.1_22.1_2
FreeBSD:13:powerpc642.1_22.1_2
FreeBSD:13:riscv64pkg-fallout2.1_2
FreeBSD:14:aarch642.1_2pkg-fallout
FreeBSD:14:amd642.1_2pkg-fallout
FreeBSD:14:armv62.1_2pkg-fallout
FreeBSD:14:armv72.1_2pkg-fallout
FreeBSD:14:i3862.1_2pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips642.1_2pkg-fallout
FreeBSD:14:powerpc642.1_2pkg-fallout
FreeBSD:14:riscv642.1_2pkg-fallout
 
This port has no dependencies.
This port is required by:
for Build
  1. biology/emboss
for Run
  1. science/py-MDAnalysis

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. biology/t_coffee*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.1/
  2. http://www.clustal.org/download/2.1/
Collapse this list.

Number of commits found: 33

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.1_2
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.1_2
20 Jul 2022 14:20:57
commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.1_2
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.1_2
21 May 2018 01:13:40
Revision:470494Original commit files touched by this commit
jwb search for other commits by this committer
biology/clustalw: Fix license, take maintainership

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15503
2.1_1
25 May 2016 15:43:34
Revision:415839Original commit files touched by this commit
mat search for other commits by this committer
Remove useless WRKSRC definitions.

While there, correct DEV_WARNINGS when they occur.

Sponsored by:	Absolight
2.1_1
19 May 2016 10:21:25
Revision:415498Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
2.1_1
14 May 2015 10:15:09
Revision:386312Original commit files touched by this commit
mat search for other commits by this committer
MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight
2.1_1
26 May 2014 02:33:39
Revision:355274Original commit files touched by this commit
eadler search for other commits by this committer
Multiple ports: reset maintainers
	Maintainers for these ports have been notified on 5 separate occasions
	over the course of several months about pending actions required.

	We really appreciate the time and effort you put in to maintain
	these ports.

	If you are still interested in helping to maintain these ports just
	reply to me or file a PR and I will happily assign the port to you
	again.

Approved by:	portmgr (implicit)
2.1_1
20 Dec 2013 15:29:07
Revision:337026Original commit files touched by this commit
wen search for other commits by this committer
- Fix build with clang/libc++.
- Support staging.

PR:		184974
Submitted by:	tijl@
2.1_1
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
2.1_1
11 Aug 2011 19:20:17
Original commit files touched by this commit Sanity Test Failure
kwm search for other commits by this committer
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:             ports/159624
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
2.1_1
21 Dec 2010 00:12:22
Original commit files touched by this commit
wen search for other commits by this committer
- Fix fetch

Reported by:    QAT@
2.1
22 Nov 2010 00:15:25
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 2.1
2.0.12
27 Dec 2009 03:05:04
Original commit files touched by this commit
wen search for other commits by this committer
- Fix fetch error
2.0.12
29 Nov 2009 01:16:36
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 2.0.12
- Update my mail address to FreeBSD
2.0.6
29 Apr 2008 12:58:52
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.0.6
- Pass maintainership to submitter

PR:             123193
Submitted by:   Wen heping <wenheping@gmail.com>
2.0.5
19 Mar 2008 14:01:13
Original commit files touched by this commit
jadawin search for other commits by this committer
- Update to 2.0.5
- Add RESTRICTED due to non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)
2.0.3_1
19 Mar 2008 13:31:52
Original commit files touched by this commit
jadawin search for other commits by this committer
- Update to version 2.0.5
- Add RESTRICTED due to a non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)
2.0.3_1
26 Feb 2008 19:53:40
Original commit files touched by this commit
pav search for other commits by this committer
- Restore clustalw symlink, other ports rely on it

Reported by:    pointyhat
Pointy hat to:  pav
2.0.3
25 Feb 2008 22:05:06
Original commit files touched by this commit
pav search for other commits by this committer
- Update to 2.0.3
2.0
15 Dec 2007 18:47:00
Original commit files touched by this commit
pav search for other commits by this committer
- Update to 2.0

PR:             ports/117713
Submitted by:   Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
1.83
11 Mar 2007 03:20:27
Original commit files touched by this commit
linimon search for other commits by this committer
Reset dbader@eece.unm.edu due to maintainer-timeout.  While here, fix fetch.
1.83
22 Jan 2006 08:20:34
Original commit files touched by this commit
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
1.83
28 Aug 2003 04:51:02
Original commit files touched by this commit
krion search for other commits by this committer
- Add an end-of-string to each line of the input
  when parsing the input files

PR:             56043
Submitted by:   maintainer
1.83
15 Feb 2003 18:43:14
Original commit files touched by this commit
naddy search for other commits by this committer
Update to 1.83.

PR:             48264
Submitted by:   David A. Bader <dbader@eece.unm.edu>
1.82_2
27 Mar 2002 14:01:57
Original commit files touched by this commit
wjv search for other commits by this committer
- Add a new patch
- Bump $PORTREVISION

PR:             36206
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
1.82_1
22 Mar 2002 08:23:23
Original commit files touched by this commit
wjv search for other commits by this committer
- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
  FreeBSD-bio list

PR:             36169
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
10 Jul 2001 14:54:22
commit hash:fp1.16061@dev.null.freshports.orgcommit hash:fp1.16061@dev.null.freshports.orgcommit hash:fp1.16061@dev.null.freshports.orgcommit hash:fp1.16061@dev.null.freshports.org files touched by this commit
sobomax search for other commits by this committer
${PREFIX}/share/${PORTNAME} --> ${DATADIR}    
03 Jul 2001 09:10:29
commit hash:fp1.15734@dev.null.freshports.orgcommit hash:fp1.15734@dev.null.freshports.orgcommit hash:fp1.15734@dev.null.freshports.orgcommit hash:fp1.15734@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Update to version 1.82    
08 Oct 2000 00:23:30
commit hash:fp1.4706@dev.null.freshports.orgcommit hash:fp1.4706@dev.null.freshports.orgcommit hash:fp1.4706@dev.null.freshports.orgcommit hash:fp1.4706@dev.null.freshports.org files touched by this commit
asami search for other commits by this committer
Convert category biology to new layout.  
03 Oct 2000 02:10:19
commit hash:fp1.4550@dev.null.freshports.orgcommit hash:fp1.4550@dev.null.freshports.orgcommit hash:fp1.4550@dev.null.freshports.orgcommit hash:fp1.4550@dev.null.freshports.org files touched by this commit
jeh search for other commits by this committer
- Support CC/CFLAGS/PREFIX properly   - gets() -> fgets()   - Add WWW: line into
pkg/DESCR    
10 Jul 2000 04:17:41
commit hash:fp1.1754@dev.null.freshports.orgcommit hash:fp1.1754@dev.null.freshports.orgcommit hash:fp1.1754@dev.null.freshports.orgcommit hash:fp1.1754@dev.null.freshports.org files touched by this commit
steve search for other commits by this committer
Adding clustalw version 1.81.   A CLUSTAL W Multiple Sequence Alignment Program.
   

Number of commits found: 33