| Port details on branch 2026Q1 |
- infernal Search sequence databases for structural RNA homologs
- 1.1.5 biology
 =0      1.1.5Version of this port present on the latest quarterly branch. - Maintainer: mzaki@e-mail.ne.jp
- Port Added: 2026-02-24 01:24:09
- Last Update: 2026-02-24 01:20:53
- Commit Hash: c1fa97b
- License: BSD3CLAUSE
- WWW:
- http://eddylab.org/infernal/
- https://github.com/EddyRivasLab/infernal/
- Description:
- Infernal, standing for "INFERence of RNA ALignment", is a tool for searching
DNA sequence database for RNA structure and sequence similarities.
It is based on Covariance Model (CM), which scores a combination of sequence
consensus and RNA secondary structure consensus, and thus is more capable of
identifying RNA homologs than using primary sequence profile.
The Rfam database of RNA families is based on Infernal.
Citation:
Nawrocki & Eddy (2013) Infernal 1.1: 100-fold faster RNA homology searches,
Bioinformatics 29: 2933-2935.
  ¦  ¦  ¦  ¦ 
- Manual pages:
-
- pkg-plist: as obtained via:
make generate-plist - USE_RC_SUBR (Service Scripts)
- no SUBR information found for this port
- Dependency lines:
-
- infernal>0:biology/infernal
- To install the port:
- cd /usr/ports/biology/infernal/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/infernal
- pkg install infernal
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: infernal
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: amd64 i386 powerpc powerpc64 powerpcspe
- distinfo:
- TIMESTAMP = 1734834453
SHA256 (infernal-1.1.5.tar.gz) = ad4ddae02f924ca7c85bc8c4a79c9f875af8df96aeb726702fa985cbe752497f
SIZE (infernal-1.1.5.tar.gz) = 31300142
No package information for this port in our database- Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link:
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.4.1 : devel/gmake
- Test dependencies:
-
- python3.11 : lang/python311
- perl5>=5.42.r<5.43 : lang/perl5.42
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for infernal-1.1.5:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
TEST=off: Build and/or run tests
===> Use 'make config' to modify these settings
- Options name:
- biology_infernal
- USES:
- compiler:c11 gmake perl5 python:test shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 1
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.1.5
24 Feb 2026 01:20:53
 |
Robert Clausecker (fuz) |
biology/infernal: not for ppc64le
Project can use VMX, but only on big endian platforms.
Approved by: portmgr (build fix blanket)
MFH: 2026Q1
Sponsored by: Raptor Computing Systems, LLC
(cherry picked from commit 8e33257234d52d48e390cce3d55162aebaa6c59d) |
Number of commits found: 1
|
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