Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

InsightToolkit Insight Toolkit

5.3.0_9^* 5.3.0_9Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-02-16 19:36:06

Also Listed In: science

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• InsightToolkit>0:science/InsightToolkit

infernal Search sequence databases for structural RNA homologs

1.1.5 1.1.5Version of this port present on the latest quarterly branch.

Maintainer: mzaki@e-mail.ne.jp

Port Added: 2026-02-24 01:24:09

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• infernal>0:biology/infernal

iqtree Efficient phylogenomic software by maximum likelihood

3.0.1 3.0.1Version of this port present on the latest quarterly branch.

Maintainer: jrm@FreeBSD.org

Port Added: 2026-02-14 14:26:08

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• iqtree>0:biology/iqtree

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.4_22 0.9.4_26Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool

2.17.0 2.17.0Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2026-02-24 01:24:19

Also Listed In: perl5 python

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-blast+>0:biology/ncbi-blast+

ncbi-cxx-toolkit NCBI C++ Toolkit

29.7.0 29.7.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-02-24 01:24:16

Also Listed In: devel science

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_38 14.9.20210423_42Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2026-01-25 01:42:26

Also Listed In: perl5

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.11.0_4 2.11.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqkit>0:biology/seqkit

taxonkit Practical and efficient NCBI taxonomy toolkit

0.19.0_13 0.19.0_17Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.20.0_17 0.20.0_21Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• unikmer>0:biology/unikmer