Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

iqtree Efficient phylogenomic software by maximum likelihood

3.0.1 3.0.1Version of this port present on the latest quarterly branch.

Maintainer: jrm@FreeBSD.org

Port Added: 2026-02-14 14:26:08

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• iqtree>0:biology/iqtree

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.4_21 0.9.4_21Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_37 14.9.20210423_37Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2026-01-25 01:42:26

Also Listed In: perl5

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.11.0_3 2.11.0_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqkit>0:biology/seqkit

taxonkit Practical and efficient NCBI taxonomy toolkit

0.19.0_12 0.19.0_12Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.20.0_16 0.20.0_16Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-01-25 01:42:26

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• unikmer>0:biology/unikmer