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Port details
unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers
0.20.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.19.1_14Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-05-26 22:27:12
Last Update: 2024-06-15 09:52:17
Commit Hash: 746fa69
License: MIT
WWW:
https://github.com/shenwei356/unikmer/
Description:
unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, providing functions including set operation k-mers (sketch) optional with TaxIds but without count information. K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik. TaxIds can be assigned when counting k-mers from genome sequences, and LCA (Lowest Common Ancestor) is computed during set opertions including computing union, intersecton, set difference, unique and repeated k-mers.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/unikmer
  2. /usr/local/share/licenses/unikmer-0.20.0_1/catalog.mk
  3. /usr/local/share/licenses/unikmer-0.20.0_1/LICENSE
  4. /usr/local/share/licenses/unikmer-0.20.0_1/MIT
Collapse this list.
Dependency lines:
  • unikmer>0:biology/unikmer
To install the port:
cd /usr/ports/biology/unikmer/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/unikmer
  • pkg install unikmer
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: unikmer
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1718108535 SHA256 (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.mod) = c0a619c514e9cf08be0a50dc494e8e890446a40d4b82043a2624b215ecc6b65e SIZE (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.mod) = 1455

Expand this list (4 items)

Collapse this list.

SHA256 (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.zip) = 2e4625ea253e3b571ccfd30fb9d825bee13a3d49e1b665a9a5d3e2a647a60e9c SIZE (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.zip) = 4288447 SHA256 (go/biology_unikmer/unikmer-v0.20.0/golang-sys-v0.21.0_GH0.tar.gz) = 06e5676d2c61345151e302c7138dd1282ce8ea3c5a6a5a03b7cb66a16c66dc22 SIZE (go/biology_unikmer/unikmer-v0.20.0/golang-sys-v0.21.0_GH0.tar.gz) = 1495683

Collapse this list.


Packages (timestamps in pop-ups are UTC):
unikmer
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.19.1_130.20.0-0.19.1_130.20.0---
FreeBSD:13:quarterly0.19.1_130.19.1_14-0.19.1_130.19.1_14---
FreeBSD:14:latest0.19.1_130.20.0_1-0.19.1_130.20.0_1---
FreeBSD:14:quarterly0.19.1_130.19.1_14-0.19.1_130.19.1_14---
FreeBSD:15:latest0.20.00.20.0n/a0.19.1_12n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. go121 : lang/go121
Test dependencies:
  1. csvtk : science/csvtk
  2. perl5>=5.36<5.37 : lang/perl5.36
Fetch dependencies:
  1. go121 : lang/go121
  2. ca_root_nss>0 : security/ca_root_nss
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_unikmer
USES:
go:modules perl5 zip
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://proxy.golang.org/github.com/shenwei356/unikmer/@v/
Collapse this list.

Number of commits found: 34

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.20.0_1
15 Jun 2024 09:52:17
commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1commit hash: 746fa696a12ef1ca798e36baf087f579375b8cd1 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump after lang/go121 update

MFH:		2024Q2
0.20.0
11 Jun 2024 17:11:41
commit hash: 2a46a41f8c5e905625f30d752260f8bd2bb90d27commit hash: 2a46a41f8c5e905625f30d752260f8bd2bb90d27commit hash: 2a46a41f8c5e905625f30d752260f8bd2bb90d27commit hash: 2a46a41f8c5e905625f30d752260f8bd2bb90d27 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
Author: Älven
biology/unikmer: update 0.19.1 → 0.20.0

PR:	279674
0.19.1_13
25 May 2024 00:11:39
commit hash: 94ca2729223b21c8d135833d187b7107a1ce591ccommit hash: 94ca2729223b21c8d135833d187b7107a1ce591ccommit hash: 94ca2729223b21c8d135833d187b7107a1ce591ccommit hash: 94ca2729223b21c8d135833d187b7107a1ce591c files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Add PORTSCOUT line
0.19.1_13
13 May 2024 17:56:04
commit hash: fce0cc32720e61042bc675152b116f9e61532e92commit hash: fce0cc32720e61042bc675152b116f9e61532e92commit hash: fce0cc32720e61042bc675152b116f9e61532e92commit hash: fce0cc32720e61042bc675152b116f9e61532e92 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump after lang/go121 update

MFH:		2024Q2
0.19.1_12
15 Apr 2024 08:20:04
commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0commit hash: 32b284679a1954ef1e0c0d52c4741d00e36dc6e0 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump after lang/go121 update

MFH:		2024Q2
0.19.1_11
24 Mar 2024 14:29:00
commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
lang/go: Change DEFAULT to 1.21

PR:		277776
Approved by:	portmgr (exp-run)
0.19.1_10
11 Feb 2024 10:39:17
commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		276530
0.19.1_9
07 Dec 2023 02:22:10
commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		274405
0.19.1_8
08 Sep 2023 14:34:56
commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update
0.19.1_7
04 Aug 2023 14:24:50
commit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fc files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
0.19.1_6
08 Apr 2023 15:13:25
commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
0.19.1_5
22 Mar 2023 20:15:16
commit hash: 175e8e7ae3febdb4eb803590b954cf3d0f51d8e6commit hash: 175e8e7ae3febdb4eb803590b954cf3d0f51d8e6commit hash: 175e8e7ae3febdb4eb803590b954cf3d0f51d8e6commit hash: 175e8e7ae3febdb4eb803590b954cf3d0f51d8e6 files touched by this commit
Robert Clausecker (fuz) search for other commits by this committer
biology/unikmer: fix build on riscv64

Bump golang.org/x/sys dependency to a version new enough
to support riscv64-freebsd.

Sponsored by:	Berliner Linux User Group e.V.
Approved by:	portmgr (build fix blanket)
0.19.1_4
09 Mar 2023 19:18:07
commit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93d files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go ports update
0.19.1_3
15 Feb 2023 19:06:01
commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
0.19.1_2
09 Feb 2023 21:55:23
commit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0d files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after GO_DEFAULT update.
0.19.1_1
14 Jan 2023 11:31:17
commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTVERSION after lang/go{118,119} update
0.19.1
27 Dec 2022 07:50:56
commit hash: 8d5935b7e1d0674af7c5c463820d73ab397b32accommit hash: 8d5935b7e1d0674af7c5c463820d73ab397b32accommit hash: 8d5935b7e1d0674af7c5c463820d73ab397b32accommit hash: 8d5935b7e1d0674af7c5c463820d73ab397b32ac files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Update 0.19.0 -> 0.19.1

Reported by:	portscout
0.19.0_6
11 Dec 2022 11:17:27
commit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2a files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
0.19.0_5
06 Oct 2022 19:24:26
commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
0.19.0_4
08 Sep 2022 16:33:18
commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.19.0_3
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.19.0_3
03 Aug 2022 21:35:13
commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go update

Bump Go ports PORTREVISION after GO_DEFAULT and lang/go118 update.
0.19.0_2
14 Jul 2022 12:46:05
commit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5a files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{117,118} update
0.19.0_1
07 Jun 2022 21:56:10
commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
*/*: Bump port revisons after lang/go{117,118} update
0.19.0
26 Apr 2022 18:51:57
commit hash: a47cbfbf3924495b439d2773a50d6b264f540affcommit hash: a47cbfbf3924495b439d2773a50d6b264f540affcommit hash: a47cbfbf3924495b439d2773a50d6b264f540affcommit hash: a47cbfbf3924495b439d2773a50d6b264f540aff files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Update 0.18.8 -> 0.19.0

Reported by:	portscout
0.18.8_1
30 Mar 2022 07:01:44
commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653 files touched by this commit
Guangyuan Yang (ygy) search for other commits by this committer
*/*: Bump PORTREVISION after lang/go 1.18 update
0.18.8
26 Sep 2021 08:54:07
commit hash: a138a5bcb4e91dfb8592de6907312458f3237341commit hash: a138a5bcb4e91dfb8592de6907312458f3237341commit hash: a138a5bcb4e91dfb8592de6907312458f3237341commit hash: a138a5bcb4e91dfb8592de6907312458f3237341 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Update 0.18.4 -> 0.18.8

Reported by:	portscout
0.18.4
03 Sep 2021 13:01:58
commit hash: 310623bb97f644b7a9a90c9e231574670edfa8f7commit hash: 310623bb97f644b7a9a90c9e231574670edfa8f7commit hash: 310623bb97f644b7a9a90c9e231574670edfa8f7commit hash: 310623bb97f644b7a9a90c9e231574670edfa8f7 files touched by this commit
Tobias Kortkamp (tobik) search for other commits by this committer
*: Clean up some things

- Fix typos
- Remove duplicate variables
- Remove nop or unreferenced variables
- Add missing ports to the build
- Clean up commented PORTREVISION
- Add missing USES

Reported by:	portscan
0.18.4
24 Aug 2021 17:10:11
commit hash: a8dd36546aadf194fad313b8e8997f69c4841d22commit hash: a8dd36546aadf194fad313b8e8997f69c4841d22commit hash: a8dd36546aadf194fad313b8e8997f69c4841d22commit hash: a8dd36546aadf194fad313b8e8997f69c4841d22 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Update 0.18.3 -> 0.18.4

Reported by:	portscout
0.18.3
14 Aug 2021 18:35:11
commit hash: c9c0132387559dfedb29f59712332eeab5305c27commit hash: c9c0132387559dfedb29f59712332eeab5305c27commit hash: c9c0132387559dfedb29f59712332eeab5305c27commit hash: c9c0132387559dfedb29f59712332eeab5305c27 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Add 'test' target
0.18.3
28 Jul 2021 17:13:47
commit hash: fb0f71e5cc9369bfb61818ebad4b16d47277286ccommit hash: fb0f71e5cc9369bfb61818ebad4b16d47277286ccommit hash: fb0f71e5cc9369bfb61818ebad4b16d47277286ccommit hash: fb0f71e5cc9369bfb61818ebad4b16d47277286c files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Update 0.18.1 -> 0.18.3

Reported by:	portscout
0.18.1
24 Jun 2021 22:06:35
commit hash: 7647f927b7a4ec6335bc3c2c0006d6ba389c923acommit hash: 7647f927b7a4ec6335bc3c2c0006d6ba389c923acommit hash: 7647f927b7a4ec6335bc3c2c0006d6ba389c923acommit hash: 7647f927b7a4ec6335bc3c2c0006d6ba389c923a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: Update 0.18.0 -> 0.18.1

Reported by:	portscout
0.18.0
26 May 2021 22:25:21
commit hash: be2fb2f2905d13d5f2463688dbf319f5940cfccccommit hash: be2fb2f2905d13d5f2463688dbf319f5940cfccccommit hash: be2fb2f2905d13d5f2463688dbf319f5940cfccccommit hash: be2fb2f2905d13d5f2463688dbf319f5940cfccc files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set
operations on k-mers

Number of commits found: 34