CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics
and data science.
People usually use spreadsheet software like MS Excel to process table data.
However this is all by clicking and typing, which is not automated and is
time-consuming to repeat, especially when you want to apply similar operations
with different datasets or purposes.
csvtk is convenient for rapid data investigation and also easy to integrate
into analysis pipelines. It could save you lots of time in (not) writing
Python/R scripts.
Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing
any more scientific computing support in the future. I have continued
to maintain ~160 ports to the best of my ability, mainly as a favor to
the community, but I can no longer justify the time and effort
required. I am therefore releasing most of my scientific ports, along
with a few others, to ports@. I will continue to maintain ports I am
actively using and those for which I am upstream.
science/csvtk: Update to 0.36.0
A few fixes and enhancements
Changes: https://github.com/shenwei356/csvtk/releases
Note: Required for biology/unikmer "make test", but it doesn't work
with 0.35.0.
Reported by: portscout
science/csvtk: Update to 0.35.0
A few fixes and enhancements
Changes: https://github.com/shenwei356/csvtk/releases
Note: Required for make test in biology/unikmer, but this was already
failing with csvtk 0.34.0.
Reported by: portscout
go: Bump go124-dependent ports
Earlier I bumped the default Go to 1.24. Ports that specify a lower
version will still build with those lower version (for now), so they
don't need a bumping. Instead I'm bumping anything that (now) has go124
as a dependency.
science/csvtk: fix build on riscv64
Bump golang.org/x/sys dependency to a version new enough
to support riscv64-freebsd.
Sponsored by: Berliner Linux User Group e.V.
Approved by: portmgr (build fix blanket)
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing
CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics
and data science.
People usually use spreadsheet software like MS Excel to process table data.
However this is all by clicking and typing, which is not automated and is
time-consuming to repeat, especially when you want to apply similar operations
with different datasets or purposes.
csvtk is convenient for rapid data investigation and also easy to integrate
into analysis pipelines. It could save you lots of time in (not) writing
Python/R scripts.
