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Port details
jellyfish Fast, memory-efficient counting of k-mers in DNA
2.3.0_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-03-24 13:53:24
Last Update: 2023-01-06 01:24:44
Commit Hash: 5ed1fc6
License: BSD3CLAUSE GPLv3+
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (65 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/Jellyfish-2.3.0_3/catalog.mk
  3. /usr/local/share/licenses/Jellyfish-2.3.0_3/LICENSE
  4. /usr/local/share/licenses/Jellyfish-2.3.0_3/BSD3CLAUSE
  5. /usr/local/share/licenses/Jellyfish-2.3.0_3/GPLv3+
  6. bin/jellyfish
  7. include/jellyfish-2.3.0/jellyfish/allocators_mmap.hpp
  8. include/jellyfish-2.3.0/jellyfish/atomic_bits_array.hpp
  9. include/jellyfish-2.3.0/jellyfish/atomic_field.hpp
  10. include/jellyfish-2.3.0/jellyfish/atomic_gcc.hpp
  11. include/jellyfish-2.3.0/jellyfish/backtrace.hpp
  12. include/jellyfish-2.3.0/jellyfish/binary_dumper.hpp
  13. include/jellyfish-2.3.0/jellyfish/bloom_common.hpp
  14. include/jellyfish-2.3.0/jellyfish/bloom_counter2.hpp
  15. include/jellyfish-2.3.0/jellyfish/bloom_filter.hpp
  16. include/jellyfish-2.3.0/jellyfish/circular_buffer.hpp
  17. include/jellyfish-2.3.0/jellyfish/compare_and_swap.hpp
  18. include/jellyfish-2.3.0/jellyfish/cooperative_pool.hpp
  19. include/jellyfish-2.3.0/jellyfish/cooperative_pool2.hpp
  20. include/jellyfish-2.3.0/jellyfish/cpp_array.hpp
  21. include/jellyfish-2.3.0/jellyfish/divisor.hpp
  22. include/jellyfish-2.3.0/jellyfish/dumper.hpp
  23. include/jellyfish-2.3.0/jellyfish/err.hpp
  24. include/jellyfish-2.3.0/jellyfish/file_header.hpp
  25. include/jellyfish-2.3.0/jellyfish/generator_manager.hpp
  26. include/jellyfish-2.3.0/jellyfish/generic_file_header.hpp
  27. include/jellyfish-2.3.0/jellyfish/hash_counter.hpp
  28. include/jellyfish-2.3.0/jellyfish/int128.hpp
  29. include/jellyfish-2.3.0/jellyfish/jellyfish.hpp
  30. include/jellyfish-2.3.0/jellyfish/json.h
  31. include/jellyfish-2.3.0/jellyfish/large_hash_array.hpp
  32. include/jellyfish-2.3.0/jellyfish/large_hash_iterator.hpp
  33. include/jellyfish-2.3.0/jellyfish/locks_pthread.hpp
  34. include/jellyfish-2.3.0/jellyfish/mapped_file.hpp
  35. include/jellyfish-2.3.0/jellyfish/mer_dna.hpp
  36. include/jellyfish-2.3.0/jellyfish/mer_dna_bloom_counter.hpp
  37. include/jellyfish-2.3.0/jellyfish/mer_heap.hpp
  38. include/jellyfish-2.3.0/jellyfish/mer_iterator.hpp
  39. include/jellyfish-2.3.0/jellyfish/mer_overlap_sequence_parser.hpp
  40. include/jellyfish-2.3.0/jellyfish/mer_qual_iterator.hpp
  41. include/jellyfish-2.3.0/jellyfish/misc.hpp
  42. include/jellyfish-2.3.0/jellyfish/offsets_key_value.hpp
  43. include/jellyfish-2.3.0/jellyfish/parser_common.hpp
  44. include/jellyfish-2.3.0/jellyfish/rectangular_binary_matrix.hpp
  45. include/jellyfish-2.3.0/jellyfish/sam_format.hpp
  46. include/jellyfish-2.3.0/jellyfish/simple_circular_buffer.hpp
  47. include/jellyfish-2.3.0/jellyfish/sorted_dumper.hpp
  48. include/jellyfish-2.3.0/jellyfish/stdio_filebuf.hpp
  49. include/jellyfish-2.3.0/jellyfish/storage.hpp
  50. include/jellyfish-2.3.0/jellyfish/stream_iterator.hpp
  51. include/jellyfish-2.3.0/jellyfish/stream_manager.hpp
  52. include/jellyfish-2.3.0/jellyfish/text_dumper.hpp
  53. include/jellyfish-2.3.0/jellyfish/thread_exec.hpp
  54. include/jellyfish-2.3.0/jellyfish/time.hpp
  55. include/jellyfish-2.3.0/jellyfish/token_ring.hpp
  56. include/jellyfish-2.3.0/jellyfish/whole_sequence_parser.hpp
  57. lib/libjellyfish-2.0.a
  58. lib/libjellyfish-2.0.so
  59. lib/libjellyfish-2.0.so.2
  60. lib/libjellyfish-2.0.so.2.0.0
  61. libdata/pkgconfig/jellyfish-2.0.pc
  62. man/man1/jellyfish.1.gz
  63. @owner
  64. @group
  65. @mode
Collapse this list.
Dependency lines:
  • Jellyfish>0:biology/jellyfish
To install the port:
cd /usr/ports/biology/jellyfish/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/jellyfish
  • pkg install Jellyfish
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: Jellyfish
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
Jellyfish
ABIlatestquarterly
FreeBSD:11:aarch64pkg-fallout2.2.10_8
FreeBSD:11:amd642.3.0_22.2.10_9
FreeBSD:11:armv6pkg-fallout2.2.10_8
FreeBSD:11:i3862.3.0_22.2.10_9
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-fallout2.3.0_2
FreeBSD:12:amd642.3.0_32.3.0_2
FreeBSD:12:armv6pkg-fallout2.2.10_9
FreeBSD:12:armv7pkg-fallout2.2.10_9
FreeBSD:12:i3862.3.0_32.3.0_2
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout2.2.10_9
FreeBSD:13:aarch642.3.0_32.3.0_2
FreeBSD:13:amd642.3.0_32.3.0_2
FreeBSD:13:armv62.2.10_92.3.0_2
FreeBSD:13:armv7pkg-fallout2.3.0_2
FreeBSD:13:i3862.3.0_32.3.0_2
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc642.2.10_92.3.0_2
FreeBSD:13:riscv64pkg-fallout2.3.0_2
FreeBSD:14:aarch642.3.0_3pkg-fallout
FreeBSD:14:amd642.3.0_3pkg-fallout
FreeBSD:14:armv62.3.0_3pkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i3862.3.0_3pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc642.3.0_2pkg-fallout
FreeBSD:14:riscv642.3.0_2pkg-fallout
 
jellyfish
ABIlatestquarterly
FreeBSD:11:aarch64pkg-falloutpkg-fallout
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv62.2.4pkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-falloutpkg-fallout
FreeBSD:12:amd64pkg-falloutpkg-fallout
FreeBSD:12:armv62.2.6_3pkg-fallout
FreeBSD:12:armv72.2.6_3pkg-fallout
FreeBSD:12:i386pkg-falloutpkg-fallout
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:aarch64pkg-falloutpkg-fallout
FreeBSD:13:amd64pkg-falloutpkg-fallout
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv7pkg-falloutpkg-fallout
FreeBSD:13:i386pkg-falloutpkg-fallout
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch64pkg-falloutpkg-fallout
FreeBSD:14:amd64pkg-falloutpkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i386pkg-falloutpkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc64pkg-falloutpkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. msgfmt : devel/gettext-tools
Library dependencies:
  1. libhts.so : biology/htslib
  2. libintl.so : devel/gettext-runtime
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://github.com/gmarcais/Jellyfish/releases/download/v2.3.0/
Collapse this list.

Number of commits found: 27

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.3.0_3
06 Jan 2023 01:24:44
commit hash:5ed1fc619eac271991f735f82aa77443899f992bcommit hash:5ed1fc619eac271991f735f82aa77443899f992bcommit hash:5ed1fc619eac271991f735f82aa77443899f992bcommit hash:5ed1fc619eac271991f735f82aa77443899f992b files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/jellyfish: Bump PORTREVISION for biology/htslib update
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.3.0_2
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.3.0_2
12 Oct 2021 15:01:38
commit hash:ae22a7846afe2f4c0ac5bc88c5a63001c5eeafb1commit hash:ae22a7846afe2f4c0ac5bc88c5a63001c5eeafb1commit hash:ae22a7846afe2f4c0ac5bc88c5a63001c5eeafb1commit hash:ae22a7846afe2f4c0ac5bc88c5a63001c5eeafb1 files touched by this commit
Tobias Kortkamp (tobik) search for other commits by this committer
*: Clean up some things

- Fix typos
- Fix overwritten variables with focus on master/slave ports
- Remove unreferenced variables
- Sort categories
- Remove redundant option descriptions
- Clean up commented PORTREVISION
- Add missing USES

Reported by:	portscan
2.3.0_2
17 Sep 2021 18:01:35
commit hash:3b937ad738af5bdf96233d23bc6c1f7008085d85commit hash:3b937ad738af5bdf96233d23bc6c1f7008085d85commit hash:3b937ad738af5bdf96233d23bc6c1f7008085d85commit hash:3b937ad738af5bdf96233d23bc6c1f7008085d85 files touched by this commit
Joseph Mingrone (jrm) search for other commits by this committer
biology/jellyfish: Switch to static tarball and update license info

The GitHub-generated tarballs require reautoconf and more dependencies
including gettext, regardless whether the NLS knob is turned off.
https://github.com/gmarcais/Jellyfish/issues/138#issuecomment-463272029

This update also fixes a build issue when the NLS knob was turned off.
http://pkg.ftfl.ca/data/13amd64-default/2021-09-16_13h45m55s/logs/errors/Jellyfish-2.3.0_1.log

Differential Revision:	https://reviews.freebsd.org/D31984

Co-authored-by: Jason W. Bacon <jwb@FreeBSD.org>
2.3.0_1
11 Sep 2021 12:29:47
commit hash:696f6acf5df455dddd38a7b023820f5eddcddc60commit hash:696f6acf5df455dddd38a7b023820f5eddcddc60commit hash:696f6acf5df455dddd38a7b023820f5eddcddc60commit hash:696f6acf5df455dddd38a7b023820f5eddcddc60 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/jellyfish: Fix unused open mode variable

PR:             258397
Reported by:    dim
2.3.0
22 Aug 2021 17:44:17
commit hash:4952cf637ae51394337f4ec1c3df17417c171831commit hash:4952cf637ae51394337f4ec1c3df17417c171831commit hash:4952cf637ae51394337f4ec1c3df17417c171831commit hash:4952cf637ae51394337f4ec1c3df17417c171831 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/jellyfish: Update to 2.3.0

Changelog:      https://github.com/gmarcais/Jellyfish/releases/tag/v2.3.0
2.2.10_9
07 Apr 2021 08:09:01
commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2.2.10_9
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.2.10_9
03 Aug 2020 17:40:04
Revision:544090Original commit files touched by this commit
jwb search for other commits by this committer
biology/htslib: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
2.2.10_8
07 Mar 2020 19:25:55
Revision:527971Original commit files touched by this commit
jwb search for other commits by this committer
biology/jellyfish: Patch for clang 10

Add cast to silence implicit conversion error

PR:             ports/244645
Submitted by:   dim
2.2.10_7
14 Sep 2019 22:01:13
Revision:512079Original commit files touched by this commit
jbeich search for other commits by this committer
Drop C++11 workaround for GCC < 6 after r449590

lang/gcc5 will expire in ~1 month. If someone still uses lang/gcc48
they should backport C++11 fix instead. QA on GCC architecuters is
currently limited to powerpc64 which uses GCC_DEFAULT.

PR:		193528
2.2.10_6
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2.2.10_5
13 May 2019 16:23:36
Revision:501578Original commit files touched by this commit
jwb search for other commits by this committer
biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64

PR:             237868
Submitted by:   pkubaj
2.2.6_4
03 May 2019 21:06:51
Revision:500752Original commit files touched by this commit
linimon search for other commits by this committer
These ports now build on aarch64.

Where necessary, pet portlint.

Approved by:	portmgr
Obtained from:	aarch64 TRYBROKEN run
2.2.6_4
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
2.2.6_3
29 Jul 2018 22:18:46
Revision:475857Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
2.2.6_2
31 Jan 2018 01:07:08
Revision:460452Original commit files touched by this commit
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
2.2.6_2
10 Sep 2017 20:55:39
Revision:449591Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
2.2.6_1
01 Apr 2017 15:23:32
Revision:437439Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
2.2.6
01 Jan 2017 03:45:13
Revision:430235Original commit files touched by this commit
sunpoet search for other commits by this committer
Remove BROKEN_FreeBSD_9

Approved by:	portmgr (blanket)
2.2.6
19 Dec 2016 16:52:34
Revision:428954Original commit files touched by this commit
jrm search for other commits by this committer
biology/jellyfish: Update to version 2.2.6

Upstream changes since version 2.2.4:
- Fix compilation warnings/errors with newer version of gcc (5.3 & 6.1).
- Fix bug in parsing function that made it stop on sequences that consist
  of only empty lines.
- New methods in bindings to enumerate the mers of a string.

Approved by:	AMDmi3 (mentor)
Differential Revision:	https://reviews.freebsd.org/D8204
2.2.4
11 Nov 2016 09:31:03
Revision:425879Original commit files touched by this commit
linimon search for other commits by this committer
Mark various leaf ports broken on aarch64, and, where appropriate, other
tier-2 archs.

Approved by:	portmgr (tier-2 blanket)
2.2.4
21 Oct 2016 15:21:13
Revision:424427Original commit files touched by this commit
mat search for other commits by this committer
Use USES=pathfix where applicable.

PR:		213195
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D8093
2.2.4
01 Apr 2016 13:29:17
Revision:412344Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
2.2.4
29 Mar 2016 20:55:49
Revision:412137Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Use more appropriate BROKEN instead of IGNORE

PR:		208367
Submitted by:	bacon4000@gmail.com (maintainer)
Suggested by:	rakuco
2.2.4
24 Mar 2016 13:53:06
Revision:411785Original commit files touched by this commit
amdmi3 search for other commits by this committer
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
A k-mer is a substring of length k, and counting the occurrences of all such
substrings is a central step in many analyses of DNA sequence. JELLYFISH can
count k-mers quickly by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase parallelism.

WWW: http://www.genome.umd.edu/jellyfish.html

PR:		207929
Submitted by:	bacon4000@gmail.com

Number of commits found: 27