Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
Commit | Credits | Log message |
1.16 05 Jan 2023 23:16:08
    |
Jason W. Bacon (jwb)  |
biology/htslib: Update to 1.16
Numerous minor enhancements and bug fixes
Changes: https://github.com/samtools/htslib/releases |
07 Sep 2022 21:58:51
    |
Stefan Eßer (se)  |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.15 07 Sep 2022 21:10:59
    |
Stefan Eßer (se)  |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above ) |
1.15 20 Jul 2022 14:20:57
    |
Tobias C. Berner (tcberner)  |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
1.15 26 Feb 2022 15:04:10
    |
Jason W. Bacon (jwb)  |
biology/htslib: Update to 1.15
A few minor bug fixes and enhancements
No API changes affecting existing dependents
Reported by: portscout |
1.14 18 Dec 2021 17:56:50
    |
Jason W. Bacon (jwb)  |
biology/htslib: Update to 1.14
Several minor enhancements and fixes
Changes: https://github.com/samtools/htslib/tags |
1.13 10 Sep 2021 21:18:20
    |
Bernhard Froehlich (decke)  |
biology/htslib: Add CPE information
Approved by: portmgr (blanket) |
1.13 12 Jul 2021 13:16:45
    |
Jason W. Bacon (jwb)  |
htslib: Update to 1.13
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/htslib/releases/tag/1.13 |
1.12 06 Apr 2021 14:31:07
    |
Mathieu Arnold (mat)  |
Remove # $FreeBSD$ from Makefiles. |
1.12 20 Mar 2021 17:14:32
  |
jwb  |
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.11
Build-tested all other htslib dependents, no revbumps should be needed
Reported by: portscout |
1.11.0 05 Nov 2020 20:30:50
  |
jwb  |
biology/htslib: Upgrade to 1.11.0
Numerous bug fixes, new features and performance improvements since 1.10
https://github.com/samtools/htslib/releases/tag/1.11
Reported by: portscout |
1.10.2 03 Aug 2020 17:40:04
  |
jwb  |
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089 |
1.9 02 Aug 2018 19:27:13
  |
fernape  |
biology/htslib: update to 1.9
PR: 230170
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16568 |
1.8 16 Jul 2018 18:11:44
  |
yuri  |
biology/htslib: Update 1.6 -> 1.8
Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW
PR: 228908
Approved by: maintainer's timeout (cartwright@asu.edu; 35 days) |
1.6 25 Oct 2017 10:19:50
  |
pizzamig  |
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768 |
1.3.1 21 Oct 2016 15:21:13
  |
mat  |
Use USES=pathfix where applicable.
PR: 213195
Submitted by: mat
Exp-run by: antoine
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D8093 |
1.3.1 26 May 2016 20:28:55
  |
pi  |
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer) |
1.3 01 Apr 2016 13:29:17
  |
mat  |
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight |
1.3 29 Dec 2015 15:05:44
  |
marino  |
biology/htslib: Replace FreeBSD-specific fix with a generic one
This port will not build if ENOTRECOVERABLE is not defined, period.
It's not necessary to check OPSYS and version, just apply the fallback
definition if it's not defined. This unbreaks DragonFly after last
commit. |
1.3 25 Dec 2015 01:31:09
  |
junovitch  |
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer) |
1.2.1 06 May 2015 15:16:54
  |
mat  |
Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.
With hat: portmgr
Sponsored by: Absolight |
1.2.1 06 Mar 2015 12:45:23
  |
robak  |
biology/htslib: update 1.1 -> 1.2.1
PR: 198291
Submitted by: Reed Cartwright <cartwright@asu.edu> |
1.1 14 Dec 2014 22:35:08
  |
pawel  |
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
WWW: http://www.htslib.org/
PR: 195591
Submitted by: Reed A. Cartwright <cartwright@asu.edu> |