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Port details
star Spliced Transcripts Alignment to a Reference
2.7.2.d biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 2.7.0.fVersion of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-04-21 20:31:13
Last Update: 2019-10-06 23:18:31
SVN Revision: 513915
License: GPLv3
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
  1. bin/STAR
  2. /usr/local/share/licenses/rna-STAR-2.7.2.d/catalog.mk
  3. /usr/local/share/licenses/rna-STAR-2.7.2.d/LICENSE
  4. /usr/local/share/licenses/rna-STAR-2.7.2.d/GPLv3
Collapse this list.
Dependency lines:
  • rna-STAR>0:biology/star
To install the port: cd /usr/ports/biology/star/ && make install clean
To add the package: pkg install rna-STAR
PKGNAME: rna-STAR
Flavors: there is no flavor information for this port.
NOT_FOR_ARCHS: i386 powerpc
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
  2. gcc9 : lang/gcc9
  3. as : devel/binutils
Runtime dependencies:
  1. gcc9 : lang/gcc9
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://codeload.github.com/alexdobin/STAR/tar.gz/2.7.2d?dummy=/

Number of commits found: 5

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Oct 2019 22:18:31
Original commit files touched by this commit  2.7.2.d
Revision:513915
jwb search for other commits by this committer
biology/star: Upgrade to 2.7.2d

Fix chimeric output bug.

Numerous other minor fixes and enhancements since 2.7.0.

Reported by:    portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit  2.7.0.f_1
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
02 May 2019 00:39:51
Original commit files touched by this commit  2.7.0.f
Revision:500629
jwb search for other commits by this committer
biology/star: Force newer GCC on platforms with GCC 4.2 base

PR:             237700
Submitted by:   pkubaj
23 Apr 2019 15:03:29
Original commit files touched by this commit  2.7.0.f
Revision:499763
jwb search for other commits by this committer
biology/star: Modify PKGBASE to avoid conflict with archivers/star
21 Apr 2019 20:30:56
Original commit files touched by this commit  2.7.0.f
Revision:499592
jwb search for other commits by this committer
biology/star: Spliced Transcripts Alignment to a Reference

STAR is an extremely fast RNA-seq aligner, an alternative to tophat2,
hisat2, bowtie, subread, etc.

Number of commits found: 5

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