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Port details
ugene Free, open-source, cross-platform bioinformatics toolkit
1.31.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
1.31.0Version of this port present on the latest quarterly branch.
Maintainer: h2+fbsdports@fsfe.org search for ports maintained by this maintainer
Port Added: 2013-02-23 04:51:12
Last Update: 2019-01-16 11:13:45
SVN Revision: 490472
Also Listed In: science
License: GPLv2+
Unipro UGENE is multiplatform, open-source software with the main goal of
assisting molecular biologists without much expertise in bioinformatics to
manage, analyze, and visualize their data.  UGENE integrates widely used
bioinformatics tools within one common user interface.

UGENE toolkit supports multiple biological data formats and allows the
retrieval of data from remote data sources.  It provides visualization
modules for biological objects such as annotated genome sequences, Next
Generation Sequencing (NGS) assembly data, multiple sequence alignments,
phylogenetic trees, and 3D structures.

WWW: http://ugene.unipro.ru/
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (1497 items)
  1. @desktop-file-utils
  2. @shared-mime-info share/mime
  3. /usr/local/share/licenses/ugene-1.31.0_1/catalog.mk
  4. /usr/local/share/licenses/ugene-1.31.0_1/LICENSE
  5. /usr/local/share/licenses/ugene-1.31.0_1/GPLv2+
  6. bin/ugene
  7. lib/ugene/libQSpec.so
  8. lib/ugene/libQSpec.so.1
  9. lib/ugene/libQSpec.so.1.0
  10. lib/ugene/libQSpec.so.1.0.0
  11. lib/ugene/libU2Algorithm.so
  12. lib/ugene/libU2Algorithm.so.1
  13. lib/ugene/libU2Algorithm.so.1.0
  14. lib/ugene/libU2Algorithm.so.1.0.0
  15. lib/ugene/libU2Core.so
  16. lib/ugene/libU2Core.so.1
  17. lib/ugene/libU2Core.so.1.0
  18. lib/ugene/libU2Core.so.1.0.0
  19. lib/ugene/libU2Designer.so
  20. lib/ugene/libU2Designer.so.1
  21. lib/ugene/libU2Designer.so.1.0
  22. lib/ugene/libU2Designer.so.1.0.0
  23. lib/ugene/libU2Formats.so
  24. lib/ugene/libU2Formats.so.1
  25. lib/ugene/libU2Formats.so.1.0
  26. lib/ugene/libU2Formats.so.1.0.0
  27. lib/ugene/libU2Gui.so
  28. lib/ugene/libU2Gui.so.1
  29. lib/ugene/libU2Gui.so.1.0
  30. lib/ugene/libU2Gui.so.1.0.0
  31. lib/ugene/libU2Lang.so
  32. lib/ugene/libU2Lang.so.1
  33. lib/ugene/libU2Lang.so.1.0
  34. lib/ugene/libU2Lang.so.1.0.0
  35. lib/ugene/libU2Private.so
  36. lib/ugene/libU2Private.so.1
  37. lib/ugene/libU2Private.so.1.0
  38. lib/ugene/libU2Private.so.1.0.0
  39. lib/ugene/libU2Script.so
  40. lib/ugene/libU2Script.so.1
  41. lib/ugene/libU2Script.so.1.0
  42. lib/ugene/libU2Script.so.1.0.0
  43. lib/ugene/libU2Test.so
  44. lib/ugene/libU2Test.so.1
  45. lib/ugene/libU2Test.so.1.0
  46. lib/ugene/libU2Test.so.1.0.0
  47. lib/ugene/libU2View.so
  48. lib/ugene/libU2View.so.1
  49. lib/ugene/libU2View.so.1.0
  50. lib/ugene/libU2View.so.1.0.0
  51. lib/ugene/libugenedb.so
  52. lib/ugene/libugenedb.so.1
  53. lib/ugene/libugenedb.so.1.0
  54. lib/ugene/libugenedb.so.1.0.0
  55. lib/ugene/plugins/CoreTests.license
  56. lib/ugene/plugins/CoreTests.plugin
  57. lib/ugene/plugins/GUITestBase.license
  58. lib/ugene/plugins/GUITestBase.plugin
  59. lib/ugene/plugins/annotator.license
  60. lib/ugene/plugins/annotator.plugin
  61. lib/ugene/plugins/api_tests.license
  62. lib/ugene/plugins/api_tests.plugin
  63. lib/ugene/plugins/ball.license
  64. lib/ugene/plugins/ball.plugin
  65. lib/ugene/plugins/biostruct3d_view.license
  66. lib/ugene/plugins/biostruct3d_view.plugin
  67. lib/ugene/plugins/browser_support.license
  68. lib/ugene/plugins/browser_support.plugin
  69. lib/ugene/plugins/chroma_view.license
  70. lib/ugene/plugins/chroma_view.plugin
  71. lib/ugene/plugins/circular_view.license
  72. lib/ugene/plugins/circular_view.plugin
  73. lib/ugene/plugins/clark_support.license
  74. lib/ugene/plugins/clark_support.plugin
  75. lib/ugene/plugins/dbi_bam.license
  76. lib/ugene/plugins/dbi_bam.plugin
  77. lib/ugene/plugins/diamond_support.license
  78. lib/ugene/plugins/diamond_support.plugin
  79. lib/ugene/plugins/dna_export.license
  80. lib/ugene/plugins/dna_export.plugin
  81. lib/ugene/plugins/dna_flexibility.license
  82. lib/ugene/plugins/dna_flexibility.plugin
  83. lib/ugene/plugins/dna_graphpack.license
  84. lib/ugene/plugins/dna_graphpack.plugin
  85. lib/ugene/plugins/dna_stat.license
  86. lib/ugene/plugins/dna_stat.plugin
  87. lib/ugene/plugins/dotplot.license
  88. lib/ugene/plugins/dotplot.plugin
  89. lib/ugene/plugins/enzymes.license
  90. lib/ugene/plugins/enzymes.plugin
  91. lib/ugene/plugins/external_tool_support.license
  92. lib/ugene/plugins/external_tool_support.plugin
  93. lib/ugene/plugins/genome_aligner.license
  94. lib/ugene/plugins/genome_aligner.plugin
  95. lib/ugene/plugins/gor4.license
  96. lib/ugene/plugins/gor4.plugin
  97. lib/ugene/plugins/hmm2.license
  98. lib/ugene/plugins/hmm2.plugin
  99. lib/ugene/plugins/kalign.license
  100. lib/ugene/plugins/kalign.plugin
  101. lib/ugene/plugins/kraken_support.license
  102. lib/ugene/plugins/kraken_support.plugin
  103. lib/ugene/plugins/libCoreTests.so
  104. lib/ugene/plugins/libCoreTests.so.1
  105. lib/ugene/plugins/libCoreTests.so.1.0
  106. lib/ugene/plugins/libCoreTests.so.1.0.0
  107. lib/ugene/plugins/libGUITestBase.so
  108. lib/ugene/plugins/libGUITestBase.so.1
  109. lib/ugene/plugins/libGUITestBase.so.1.0
  110. lib/ugene/plugins/libGUITestBase.so.1.0.0
  111. lib/ugene/plugins/libannotator.so
  112. lib/ugene/plugins/libannotator.so.1
  113. lib/ugene/plugins/libannotator.so.1.0
  114. lib/ugene/plugins/libannotator.so.1.0.0
  115. lib/ugene/plugins/libapi_tests.so
  116. lib/ugene/plugins/libapi_tests.so.1
  117. lib/ugene/plugins/libapi_tests.so.1.0
  118. lib/ugene/plugins/libapi_tests.so.1.0.0
  119. lib/ugene/plugins/libball.so
  120. lib/ugene/plugins/libball.so.1
  121. lib/ugene/plugins/libball.so.1.0
  122. lib/ugene/plugins/libball.so.1.0.0
  123. lib/ugene/plugins/libbiostruct3d_view.so
  124. lib/ugene/plugins/libbiostruct3d_view.so.1
  125. lib/ugene/plugins/libbiostruct3d_view.so.1.0
  126. lib/ugene/plugins/libbiostruct3d_view.so.1.0.0
  127. lib/ugene/plugins/libbrowser_support.so
  128. lib/ugene/plugins/libbrowser_support.so.1
  129. lib/ugene/plugins/libbrowser_support.so.1.0
  130. lib/ugene/plugins/libbrowser_support.so.1.0.0
  131. lib/ugene/plugins/libchroma_view.so
  132. lib/ugene/plugins/libchroma_view.so.1
  133. lib/ugene/plugins/libchroma_view.so.1.0
  134. lib/ugene/plugins/libchroma_view.so.1.0.0
  135. lib/ugene/plugins/libcircular_view.so
  136. lib/ugene/plugins/libcircular_view.so.1
  137. lib/ugene/plugins/libcircular_view.so.1.0
  138. lib/ugene/plugins/libcircular_view.so.1.0.0
  139. lib/ugene/plugins/libclark_support.so
  140. lib/ugene/plugins/libclark_support.so.1
  141. lib/ugene/plugins/libclark_support.so.1.0
  142. lib/ugene/plugins/libclark_support.so.1.0.0
  143. lib/ugene/plugins/libdbi_bam.so
  144. lib/ugene/plugins/libdbi_bam.so.1
  145. lib/ugene/plugins/libdbi_bam.so.1.0
  146. lib/ugene/plugins/libdbi_bam.so.1.0.0
  147. lib/ugene/plugins/libdiamond_support.so
  148. lib/ugene/plugins/libdiamond_support.so.1
  149. lib/ugene/plugins/libdiamond_support.so.1.0
  150. lib/ugene/plugins/libdiamond_support.so.1.0.0
  151. lib/ugene/plugins/libdna_export.so
  152. lib/ugene/plugins/libdna_export.so.1
  153. lib/ugene/plugins/libdna_export.so.1.0
  154. lib/ugene/plugins/libdna_export.so.1.0.0
  155. lib/ugene/plugins/libdna_flexibility.so
  156. lib/ugene/plugins/libdna_flexibility.so.1
  157. lib/ugene/plugins/libdna_flexibility.so.1.0
  158. lib/ugene/plugins/libdna_flexibility.so.1.0.0
  159. lib/ugene/plugins/libdna_graphpack.so
  160. lib/ugene/plugins/libdna_graphpack.so.1
  161. lib/ugene/plugins/libdna_graphpack.so.1.0
  162. lib/ugene/plugins/libdna_graphpack.so.1.0.0
  163. lib/ugene/plugins/libdna_stat.so
  164. lib/ugene/plugins/libdna_stat.so.1
  165. lib/ugene/plugins/libdna_stat.so.1.0
  166. lib/ugene/plugins/libdna_stat.so.1.0.0
  167. lib/ugene/plugins/libdotplot.so
  168. lib/ugene/plugins/libdotplot.so.1
  169. lib/ugene/plugins/libdotplot.so.1.0
  170. lib/ugene/plugins/libdotplot.so.1.0.0
  171. lib/ugene/plugins/libenzymes.so
  172. lib/ugene/plugins/libenzymes.so.1
  173. lib/ugene/plugins/libenzymes.so.1.0
  174. lib/ugene/plugins/libenzymes.so.1.0.0
  175. lib/ugene/plugins/libexternal_tool_support.so
  176. lib/ugene/plugins/libexternal_tool_support.so.1
  177. lib/ugene/plugins/libexternal_tool_support.so.1.0
  178. lib/ugene/plugins/libexternal_tool_support.so.1.0.0
  179. lib/ugene/plugins/libgenome_aligner.so
  180. lib/ugene/plugins/libgenome_aligner.so.1
  181. lib/ugene/plugins/libgenome_aligner.so.1.0
  182. lib/ugene/plugins/libgenome_aligner.so.1.0.0
  183. lib/ugene/plugins/libgor4.so
  184. lib/ugene/plugins/libgor4.so.1
  185. lib/ugene/plugins/libgor4.so.1.0
  186. lib/ugene/plugins/libgor4.so.1.0.0
  187. lib/ugene/plugins/libhmm2.so
  188. lib/ugene/plugins/libhmm2.so.1
  189. lib/ugene/plugins/libhmm2.so.1.0
  190. lib/ugene/plugins/libhmm2.so.1.0.0
  191. lib/ugene/plugins/libkalign.so
  192. lib/ugene/plugins/libkalign.so.1
  193. lib/ugene/plugins/libkalign.so.1.0
  194. lib/ugene/plugins/libkalign.so.1.0.0
  195. lib/ugene/plugins/libkraken_support.so
  196. lib/ugene/plugins/libkraken_support.so.1
  197. lib/ugene/plugins/libkraken_support.so.1.0
  198. lib/ugene/plugins/libkraken_support.so.1.0.0
  199. lib/ugene/plugins/liblinkdata_support.so
  200. lib/ugene/plugins/liblinkdata_support.so.1
  201. lib/ugene/plugins/liblinkdata_support.so.1.0
  202. lib/ugene/plugins/liblinkdata_support.so.1.0.0
  203. lib/ugene/plugins/libngs_reads_classification.so
  204. lib/ugene/plugins/libngs_reads_classification.so.1
  205. lib/ugene/plugins/libngs_reads_classification.so.1.0
  206. lib/ugene/plugins/libngs_reads_classification.so.1.0.0
  207. lib/ugene/plugins/libopencl_support.so
  208. lib/ugene/plugins/libopencl_support.so.1
  209. lib/ugene/plugins/libopencl_support.so.1.0
  210. lib/ugene/plugins/libopencl_support.so.1.0.0
  211. lib/ugene/plugins/liborf_marker.so
  212. lib/ugene/plugins/liborf_marker.so.1
  213. lib/ugene/plugins/liborf_marker.so.1.0
  214. lib/ugene/plugins/liborf_marker.so.1.0.0
  215. lib/ugene/plugins/libpcr.so
  216. lib/ugene/plugins/libpcr.so.1
  217. lib/ugene/plugins/libpcr.so.1.0
  218. lib/ugene/plugins/libpcr.so.1.0.0
  219. lib/ugene/plugins/libperf_monitor.so
  220. lib/ugene/plugins/libperf_monitor.so.1
  221. lib/ugene/plugins/libperf_monitor.so.1.0
  222. lib/ugene/plugins/libperf_monitor.so.1.0.0
  223. lib/ugene/plugins/libphylip.so
  224. lib/ugene/plugins/libphylip.so.1
  225. lib/ugene/plugins/libphylip.so.1.0
  226. lib/ugene/plugins/libphylip.so.1.0.0
  227. lib/ugene/plugins/libprimer3.so
  228. lib/ugene/plugins/libprimer3.so.1
  229. lib/ugene/plugins/libprimer3.so.1.0
  230. lib/ugene/plugins/libprimer3.so.1.0.0
  231. lib/ugene/plugins/libpsipred.so
  232. lib/ugene/plugins/libpsipred.so.1
  233. lib/ugene/plugins/libpsipred.so.1.0
  234. lib/ugene/plugins/libpsipred.so.1.0.0
  235. lib/ugene/plugins/libptools.so
  236. lib/ugene/plugins/libptools.so.1
  237. lib/ugene/plugins/libptools.so.1.0
  238. lib/ugene/plugins/libptools.so.1.0.0
  239. lib/ugene/plugins/libquery_designer.so
  240. lib/ugene/plugins/libquery_designer.so.1
  241. lib/ugene/plugins/libquery_designer.so.1.0
  242. lib/ugene/plugins/libquery_designer.so.1.0.0
  243. lib/ugene/plugins/libremote_blast.so
  244. lib/ugene/plugins/libremote_blast.so.1
  245. lib/ugene/plugins/libremote_blast.so.1.0
  246. lib/ugene/plugins/libremote_blast.so.1.0.0
  247. lib/ugene/plugins/librepeat_finder.so
  248. lib/ugene/plugins/librepeat_finder.so.1
  249. lib/ugene/plugins/librepeat_finder.so.1.0
  250. lib/ugene/plugins/librepeat_finder.so.1.0.0
  251. lib/ugene/plugins/libsitecon.so
  252. lib/ugene/plugins/libsitecon.so.1
  253. lib/ugene/plugins/libsitecon.so.1.0
  254. lib/ugene/plugins/libsitecon.so.1.0.0
  255. lib/ugene/plugins/libsmith_waterman.so
  256. lib/ugene/plugins/libsmith_waterman.so.1
  257. lib/ugene/plugins/libsmith_waterman.so.1.0
  258. lib/ugene/plugins/libsmith_waterman.so.1.0.0
  259. lib/ugene/plugins/libtest_runner.so
  260. lib/ugene/plugins/libtest_runner.so.1
  261. lib/ugene/plugins/libtest_runner.so.1.0
  262. lib/ugene/plugins/libtest_runner.so.1.0.0
  263. lib/ugene/plugins/libumuscle.so
  264. lib/ugene/plugins/libumuscle.so.1
  265. lib/ugene/plugins/libumuscle.so.1.0
  266. lib/ugene/plugins/libumuscle.so.1.0.0
  267. lib/ugene/plugins/libvariants.so
  268. lib/ugene/plugins/libvariants.so.1
  269. lib/ugene/plugins/libvariants.so.1.0
  270. lib/ugene/plugins/libvariants.so.1.0.0
  271. lib/ugene/plugins/libweight_matrix.so
  272. lib/ugene/plugins/libweight_matrix.so.1
  273. lib/ugene/plugins/libweight_matrix.so.1.0
  274. lib/ugene/plugins/libweight_matrix.so.1.0.0
  275. lib/ugene/plugins/libwevote_support.so
  276. lib/ugene/plugins/libwevote_support.so.1
  277. lib/ugene/plugins/libwevote_support.so.1.0
  278. lib/ugene/plugins/libwevote_support.so.1.0.0
  279. lib/ugene/plugins/libworkflow_designer.so
  280. lib/ugene/plugins/libworkflow_designer.so.1
  281. lib/ugene/plugins/libworkflow_designer.so.1.0
  282. lib/ugene/plugins/libworkflow_designer.so.1.0.0
  283. lib/ugene/plugins/linkdata_support.license
  284. lib/ugene/plugins/linkdata_support.plugin
  285. lib/ugene/plugins/ngs_reads_classification.license
  286. lib/ugene/plugins/ngs_reads_classification.plugin
  287. lib/ugene/plugins/opencl_support.license
  288. lib/ugene/plugins/opencl_support.plugin
  289. lib/ugene/plugins/orf_marker.license
  290. lib/ugene/plugins/orf_marker.plugin
  291. lib/ugene/plugins/pcr.license
  292. lib/ugene/plugins/pcr.plugin
  293. lib/ugene/plugins/perf_monitor.license
  294. lib/ugene/plugins/perf_monitor.plugin
  295. lib/ugene/plugins/phylip.license
  296. lib/ugene/plugins/phylip.plugin
  297. lib/ugene/plugins/primer3.license
  298. lib/ugene/plugins/primer3.plugin
  299. lib/ugene/plugins/psipred.license
  300. lib/ugene/plugins/psipred.plugin
  301. lib/ugene/plugins/ptools.license
  302. lib/ugene/plugins/ptools.plugin
  303. lib/ugene/plugins/query_designer.license
  304. lib/ugene/plugins/query_designer.plugin
  305. lib/ugene/plugins/remote_blast.license
  306. lib/ugene/plugins/remote_blast.plugin
  307. lib/ugene/plugins/repeat_finder.license
  308. lib/ugene/plugins/repeat_finder.plugin
  309. lib/ugene/plugins/sitecon.license
  310. lib/ugene/plugins/sitecon.plugin
  311. lib/ugene/plugins/smith_waterman.license
  312. lib/ugene/plugins/smith_waterman.plugin
  313. lib/ugene/plugins/test_runner.license
  314. lib/ugene/plugins/test_runner.plugin
  315. lib/ugene/plugins/umuscle.license
  316. lib/ugene/plugins/umuscle.plugin
  317. lib/ugene/plugins/variants.license
  318. lib/ugene/plugins/variants.plugin
  319. lib/ugene/plugins/weight_matrix.license
  320. lib/ugene/plugins/weight_matrix.plugin
  321. lib/ugene/plugins/wevote_support.license
  322. lib/ugene/plugins/wevote_support.plugin
  323. lib/ugene/plugins/workflow_designer.license
  324. lib/ugene/plugins/workflow_designer.plugin
  325. lib/ugene/plugins_checker
  326. lib/ugene/transl_en.qm
  327. lib/ugene/transl_ru.qm
  328. lib/ugene/ugene
  329. lib/ugene/ugenecl
  330. lib/ugene/ugenem
  331. lib/ugene/ugeneui
  332. man/man1/ugene.1.gz
  333. share/applications/ugene.desktop
  334. share/icons/hicolor/32x32/mimetypes/application-x-ugene-ext.png
  335. share/mime/packages/application-x-ugene.xml
  336. share/pixmaps/ugene.png
  337. share/pixmaps/ugene.xpm
  338. share/ugene/DBXRefRegistry.txt
  339. share/ugene/adapters/adapters.fasta
  340. share/ugene/adapters/illumina/NexteraPE-PE.fa
  341. share/ugene/adapters/illumina/TruSeq2-PE.fa
  342. share/ugene/adapters/illumina/TruSeq2-SE.fa
  343. share/ugene/adapters/illumina/TruSeq3-PE-2.fa
  344. share/ugene/adapters/illumina/TruSeq3-PE.fa
  345. share/ugene/adapters/illumina/TruSeq3-SE.fa
  346. share/ugene/back_translation/Bacteria/Arthrobacter_aurescens_TC1.cut
  347. share/ugene/back_translation/Bacteria/Bacillus_subtilis.cut
  348. share/ugene/back_translation/Bacteria/Escherichia_coli.cut
  349. share/ugene/back_translation/Bacteria/Haemophilus_influenzae.cut
  350. share/ugene/back_translation/Bacteria/Helicobacter_pylori.cut
  351. share/ugene/back_translation/Bacteria/Listeria_monocytogenes.cut
  352. share/ugene/back_translation/Bacteria/Neisseria_meningitidis.cut
  353. share/ugene/back_translation/Bacteria/Salmonella_typhimurium_LT2.cut
  354. share/ugene/back_translation/Bacteria/Streptomyces_coelicolor_A3(2).cut
  355. share/ugene/back_translation/Bacteria/Sulfolobus_solfataricus_P2.cut
  356. share/ugene/back_translation/Invertebrates/Apis_mellifera_(honey_bee).cut
  357. share/ugene/back_translation/Invertebrates/Caenorhabditis_elegans.cut
  358. share/ugene/back_translation/Invertebrates/Drosophila_melanogaster_(fruit_fly).cut
  359. share/ugene/back_translation/Invertebrates/Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut
  360. share/ugene/back_translation/Invertebrates/mitochondrion_Caenorhabditis_elegans.cut
  361. share/ugene/back_translation/Invertebrates/mitochondrion_Drosophila_melanogaster_(fruit_fly).cut
  362. share/ugene/back_translation/Mammalia/Bos_taurus_(cow).cut
  363. share/ugene/back_translation/Mammalia/Canis_familiaris_(dog).cut
  364. share/ugene/back_translation/Mammalia/Sus_scrofa_(pig).cut
  365. share/ugene/back_translation/Mammalia/mitochondrion_Bos_taurus_(cow).cut
  366. share/ugene/back_translation/Mammalia/mitochondrion_Sus_scrofa_(pig).cut
  367. share/ugene/back_translation/Plants/Arabidopsis_thaliana_(thale_cress).cut
  368. share/ugene/back_translation/Plants/Oryza_sativa.cut
  369. share/ugene/back_translation/Plants/Zea_mays.cut
  370. share/ugene/back_translation/Primates/Homo_sapiens_(human).cut
  371. share/ugene/back_translation/Primates/Pan_troglodytes_(chimpanzee).cut
  372. share/ugene/back_translation/Primates/mitochondrion_Homo_sapiens_(human).cut
  373. share/ugene/back_translation/Primates/mitochondrion_Pan_troglodytes_(chimpanzee).cut
  374. share/ugene/back_translation/Rodents/Mus_musculus_(house_mouse).cut
  375. share/ugene/back_translation/Rodents/Rattus_norvegicus_(Norway_rat).cut
  376. share/ugene/back_translation/Vertebrates/Gallus_gallus_(chicken).cut
  377. share/ugene/back_translation/Vertebrates/Takifugu_rubripes_(Fugu_rubripes).cut
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  914. share/ugene/position_weight_matrix/UniPROBE/Cell08/Cphx_3484.1.pwm
  915. share/ugene/position_weight_matrix/UniPROBE/Cell08/Crx_3485.1.pwm
  916. share/ugene/position_weight_matrix/UniPROBE/Cell08/Cutl1_3494.1.pwm
  917. share/ugene/position_weight_matrix/UniPROBE/Cell08/Cutl1_3494.2.pwm
  918. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dbx1_3486.1.pwm
  919. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dbx2_3487.1.pwm
  920. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dlx1_1741.2.pwm
  921. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dlx2_2273.2.pwm
  922. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dlx3_1030.1.pwm
  923. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dlx4_3488.2.pwm
  924. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dlx5_3419.2.pwm
  925. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dmbx1_2277.1.pwm
  926. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dobox4_3956.2.pwm
  927. share/ugene/position_weight_matrix/UniPROBE/Cell08/Dobox5_3493.1.pwm
  928. share/ugene/position_weight_matrix/UniPROBE/Cell08/Duxl_1286.2.pwm
  929. share/ugene/position_weight_matrix/UniPROBE/Cell08/Emx2_3420.1.pwm
  930. share/ugene/position_weight_matrix/UniPROBE/Cell08/En1_3123.2.pwm
  931. share/ugene/position_weight_matrix/UniPROBE/Cell08/En2_0952.1.pwm
  932. share/ugene/position_weight_matrix/UniPROBE/Cell08/Esx1_3124.2.pwm
  933. share/ugene/position_weight_matrix/UniPROBE/Cell08/Evx1_3952.2.pwm
  934. share/ugene/position_weight_matrix/UniPROBE/Cell08/Evx2_2645.3.pwm
  935. share/ugene/position_weight_matrix/UniPROBE/Cell08/Gbx1_2883.2.pwm
  936. share/ugene/position_weight_matrix/UniPROBE/Cell08/Gbx2_3110.1.pwm
  937. share/ugene/position_weight_matrix/UniPROBE/Cell08/Gsc_2327.3.pwm
  938. share/ugene/position_weight_matrix/UniPROBE/Cell08/Gsh2_3990.2.pwm
  939. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hdx_3845.3.pwm
  940. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hlx1_2350.1.pwm
  941. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hlxb9_3422.1.pwm
  942. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hmbox1_2674.1.pwm
  943. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hmx1_3423.1.pwm
  944. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hmx2_3424.3.pwm
  945. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hmx3_3490.2.pwm
  946. share/ugene/position_weight_matrix/UniPROBE/Cell08/Homez_1063.2.pwm
  947. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa10_2318.1.pwm
  948. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa11_2218.1.pwm
  949. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa13_3126.1.pwm
  950. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa1_3425.1.pwm
  951. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa2_3079.1.pwm
  952. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa3_2783.2.pwm
  953. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa4_3426.1.pwm
  954. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa5_3415.1.pwm
  955. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa6_1040.1.pwm
  956. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa7_2668.2.pwm
  957. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa7_3750.1.pwm
  958. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxa9_2622.2.pwm
  959. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb13_3479.1.pwm
  960. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb3_1720.2.pwm
  961. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb4_2627.1.pwm
  962. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb5_3122.2.pwm
  963. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb6_3428.2.pwm
  964. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb7_3953.1.pwm
  965. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb8_3780.2.pwm
  966. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxb9_3413.1.pwm
  967. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc10_2779.2.pwm
  968. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc11_3718.2.pwm
  969. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc12_3480.1.pwm
  970. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc13_3127.1.pwm
  971. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc4_3491.1.pwm
  972. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc5_2630.2.pwm
  973. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc6_3954.2.pwm
  974. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc8_3429.2.pwm
  975. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxc9_2367.2.pwm
  976. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxd10_2368.2.pwm
  977. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxd11_3873.1.pwm
  978. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxd12_3481.1.pwm
  979. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxd13_2356.1.pwm
  980. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxd1_3448.1.pwm
  981. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxd3_1742.2.pwm
  982. share/ugene/position_weight_matrix/UniPROBE/Cell08/Hoxd8_2644.1.pwm
  983. share/ugene/position_weight_matrix/UniPROBE/Cell08/Ipf1_3815.1.pwm
  984. share/ugene/position_weight_matrix/UniPROBE/Cell08/Irx2_0900.3.pwm
  985. share/ugene/position_weight_matrix/UniPROBE/Cell08/Irx3_0920.1.pwm
  986. share/ugene/position_weight_matrix/UniPROBE/Cell08/Irx3_2226.1.pwm
  987. share/ugene/position_weight_matrix/UniPROBE/Cell08/Irx4_2242.3.pwm
  988. share/ugene/position_weight_matrix/UniPROBE/Cell08/Irx5_2385.1.pwm
  989. share/ugene/position_weight_matrix/UniPROBE/Cell08/Irx6_2623.2.pwm
  990. share/ugene/position_weight_matrix/UniPROBE/Cell08/Isl2_3430.1.pwm
  991. share/ugene/position_weight_matrix/UniPROBE/Cell08/Isx_3445.1.pwm
  992. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lbx2_3869.2.pwm
  993. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx1_2240.2.pwm
  994. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx2_0953.2.pwm
  995. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx3_3431.1.pwm
  996. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx4_1719.2.pwm
  997. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx5_2279.1.pwm
  998. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx6_2272.1.pwm
  999. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx6_3432.1.pwm
  1000. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx8_2247.2.pwm
  1001. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lhx9_3492.1.pwm
  1002. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lmx1a_2238.2.pwm
  1003. share/ugene/position_weight_matrix/UniPROBE/Cell08/Lmx1b_3433.2.pwm
  1004. share/ugene/position_weight_matrix/UniPROBE/Cell08/Meis1_2335.1.pwm
  1005. share/ugene/position_weight_matrix/UniPROBE/Cell08/Meox1_2310.2.pwm
  1006. share/ugene/position_weight_matrix/UniPROBE/Cell08/Mrg1_2246.2.pwm
  1007. share/ugene/position_weight_matrix/UniPROBE/Cell08/Mrg2_2302.1.pwm
  1008. share/ugene/position_weight_matrix/UniPROBE/Cell08/Msx1_3031.2.pwm
  1009. share/ugene/position_weight_matrix/UniPROBE/Cell08/Msx2_3449.1.pwm
  1010. share/ugene/position_weight_matrix/UniPROBE/Cell08/Msx3_3206.1.pwm
  1011. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx1-1_3856.3.pwm
  1012. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx1-2_3214.1.pwm
  1013. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx2-2_2823.1.pwm
  1014. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx2-3_3435.1.pwm
  1015. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx2-4_3074.1.pwm
  1016. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx2-5_3436.1.pwm
  1017. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx2-6_3437.1.pwm
  1018. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx2-9_3082.1.pwm
  1019. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx3-1_2923.2.pwm
  1020. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.1.pwm
  1021. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.2.pwm
  1022. share/ugene/position_weight_matrix/UniPROBE/Cell08/Nkx6-3_3446.1.pwm
  1023. share/ugene/position_weight_matrix/UniPROBE/Cell08/Obox1_3970.2.pwm
  1024. share/ugene/position_weight_matrix/UniPROBE/Cell08/Obox2_3438.2.pwm
  1025. share/ugene/position_weight_matrix/UniPROBE/Cell08/Obox3_3439.1.pwm
  1026. share/ugene/position_weight_matrix/UniPROBE/Cell08/Obox5_2284.1.pwm
  1027. share/ugene/position_weight_matrix/UniPROBE/Cell08/Obox5_3963.2.pwm
  1028. share/ugene/position_weight_matrix/UniPROBE/Cell08/Obox6_3440.2.pwm
  1029. share/ugene/position_weight_matrix/UniPROBE/Cell08/Og2x_3719.1.pwm
  1030. share/ugene/position_weight_matrix/UniPROBE/Cell08/Otp_3496.1.pwm
  1031. share/ugene/position_weight_matrix/UniPROBE/Cell08/Otx1_2325.1.pwm
  1032. share/ugene/position_weight_matrix/UniPROBE/Cell08/Otx2_3441.1.pwm
  1033. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pax4_3989.2.pwm
  1034. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pax6_3838.3.pwm
  1035. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pax7_3783.1.pwm
  1036. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pbx1_3203.1.pwm
  1037. share/ugene/position_weight_matrix/UniPROBE/Cell08/Phox2a_3947.1.pwm
  1038. share/ugene/position_weight_matrix/UniPROBE/Cell08/Phox2b_3948.1.pwm
  1039. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pitx1_2312.1.pwm
  1040. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pitx2_2274.3.pwm
  1041. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pitx3_3497.2.pwm
  1042. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pknox1_2364.2.pwm
  1043. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pknox2_3077.2.pwm
  1044. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou1f1_3818.1.pwm
  1045. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou2f1_3081.2.pwm
  1046. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou2f2_3748.1.pwm
  1047. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou2f3_3986.2.pwm
  1048. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou3f1_3819.1.pwm
  1049. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou3f2_2824.1.pwm
  1050. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou3f3_3235.2.pwm
  1051. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou3f4_3773.1.pwm
  1052. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou4f3_2791.1.pwm
  1053. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou6f1_1731.2.pwm
  1054. share/ugene/position_weight_matrix/UniPROBE/Cell08/Pou6f1_3733.1.pwm
  1055. share/ugene/position_weight_matrix/UniPROBE/Cell08/Prop1_3949.1.pwm
  1056. share/ugene/position_weight_matrix/UniPROBE/Cell08/Prrx1_3442.1.pwm
  1057. share/ugene/position_weight_matrix/UniPROBE/Cell08/Prrx2_3072.1.pwm
  1058. share/ugene/position_weight_matrix/UniPROBE/Cell08/Rax_3443.1.pwm
  1059. share/ugene/position_weight_matrix/UniPROBE/Cell08/Rhox11_1765.2.pwm
  1060. share/ugene/position_weight_matrix/UniPROBE/Cell08/Rhox11_2205.1.pwm
  1061. share/ugene/position_weight_matrix/UniPROBE/Cell08/Rhox6_4251.1.pwm
  1062. share/ugene/position_weight_matrix/UniPROBE/Cell08/Shox2_2641.2.pwm
  1063. share/ugene/position_weight_matrix/UniPROBE/Cell08/Six1_0935.2.pwm
  1064. share/ugene/position_weight_matrix/UniPROBE/Cell08/Six2_2307.2.pwm
  1065. share/ugene/position_weight_matrix/UniPROBE/Cell08/Six3_1732.2.pwm
  1066. share/ugene/position_weight_matrix/UniPROBE/Cell08/Six4_2860.1.pwm
  1067. share/ugene/position_weight_matrix/UniPROBE/Cell08/Six6_2267.4.pwm
  1068. share/ugene/position_weight_matrix/UniPROBE/Cell08/Six6_2267.5.pwm
  1069. share/ugene/position_weight_matrix/UniPROBE/Cell08/Tcf1_2666.2.pwm
  1070. share/ugene/position_weight_matrix/UniPROBE/Cell08/Tcf2_0913.2.pwm
  1071. share/ugene/position_weight_matrix/UniPROBE/Cell08/Tgif1_2342.2.pwm
  1072. share/ugene/position_weight_matrix/UniPROBE/Cell08/Tgif2_3451.1.pwm
  1073. share/ugene/position_weight_matrix/UniPROBE/Cell08/Titf1_1722.2.pwm
  1074. share/ugene/position_weight_matrix/UniPROBE/Cell08/Tlx2_3498.2.pwm
  1075. share/ugene/position_weight_matrix/UniPROBE/Cell08/Uncx4.1_2281.2.pwm
  1076. share/ugene/position_weight_matrix/UniPROBE/Cell08/Vax1_3499.1.pwm
  1077. share/ugene/position_weight_matrix/UniPROBE/Cell08/Vax2_3500.1.pwm
  1078. share/ugene/position_weight_matrix/UniPROBE/Cell08/Vsx1_1728.1.pwm
  1079. share/ugene/position_weight_matrix/UniPROBE/GR09/Aft1.pwm
  1080. share/ugene/position_weight_matrix/UniPROBE/GR09/Aro80.pwm
  1081. share/ugene/position_weight_matrix/UniPROBE/GR09/Asg1.pwm
  1082. share/ugene/position_weight_matrix/UniPROBE/GR09/Bas1.pwm
  1083. share/ugene/position_weight_matrix/UniPROBE/GR09/Cbf1.pwm
  1084. share/ugene/position_weight_matrix/UniPROBE/GR09/Cep3.pwm
  1085. share/ugene/position_weight_matrix/UniPROBE/GR09/Cha4.pwm
  1086. share/ugene/position_weight_matrix/UniPROBE/GR09/Cup9.pwm
  1087. share/ugene/position_weight_matrix/UniPROBE/GR09/Ecm22.pwm
  1088. share/ugene/position_weight_matrix/UniPROBE/GR09/Fhl1.pwm
  1089. share/ugene/position_weight_matrix/UniPROBE/GR09/Fkh1.pwm
  1090. share/ugene/position_weight_matrix/UniPROBE/GR09/Fkh2.pwm
  1091. share/ugene/position_weight_matrix/UniPROBE/GR09/Gal4.pwm
  1092. share/ugene/position_weight_matrix/UniPROBE/GR09/Gat1.pwm
  1093. share/ugene/position_weight_matrix/UniPROBE/GR09/Gat3.pwm
  1094. share/ugene/position_weight_matrix/UniPROBE/GR09/Gat4.pwm
  1095. share/ugene/position_weight_matrix/UniPROBE/GR09/Gcn4.pwm
  1096. share/ugene/position_weight_matrix/UniPROBE/GR09/Gln3.pwm
  1097. share/ugene/position_weight_matrix/UniPROBE/GR09/Gsm1.pwm
  1098. share/ugene/position_weight_matrix/UniPROBE/GR09/Gzf3.pwm
  1099. share/ugene/position_weight_matrix/UniPROBE/GR09/Hal9.pwm
  1100. share/ugene/position_weight_matrix/UniPROBE/GR09/Leu3.pwm
  1101. share/ugene/position_weight_matrix/UniPROBE/GR09/Lys14.pwm
  1102. share/ugene/position_weight_matrix/UniPROBE/GR09/Matalpha2.pwm
  1103. share/ugene/position_weight_matrix/UniPROBE/GR09/Mbp1.pwm
  1104. share/ugene/position_weight_matrix/UniPROBE/GR09/Mcm1.pwm
  1105. share/ugene/position_weight_matrix/UniPROBE/GR09/Met32.pwm
  1106. share/ugene/position_weight_matrix/UniPROBE/GR09/Mga1.pwm
  1107. share/ugene/position_weight_matrix/UniPROBE/GR09/Mig1.pwm
  1108. share/ugene/position_weight_matrix/UniPROBE/GR09/Mig2.pwm
  1109. share/ugene/position_weight_matrix/UniPROBE/GR09/Mig3.pwm
  1110. share/ugene/position_weight_matrix/UniPROBE/GR09/Ndt80.pwm
  1111. share/ugene/position_weight_matrix/UniPROBE/GR09/Nhp6a.pwm
  1112. share/ugene/position_weight_matrix/UniPROBE/GR09/Nhp6b.pwm
  1113. share/ugene/position_weight_matrix/UniPROBE/GR09/Nrg1.pwm
  1114. share/ugene/position_weight_matrix/UniPROBE/GR09/Oaf1.pwm
  1115. share/ugene/position_weight_matrix/UniPROBE/GR09/Pbf1.pwm
  1116. share/ugene/position_weight_matrix/UniPROBE/GR09/Pbf2.pwm
  1117. share/ugene/position_weight_matrix/UniPROBE/GR09/Pdr1.pwm
  1118. share/ugene/position_weight_matrix/UniPROBE/GR09/Phd1.pwm
  1119. share/ugene/position_weight_matrix/UniPROBE/GR09/Pho2.pwm
  1120. share/ugene/position_weight_matrix/UniPROBE/GR09/Pho4.pwm
  1121. share/ugene/position_weight_matrix/UniPROBE/GR09/Put3.pwm
  1122. share/ugene/position_weight_matrix/UniPROBE/GR09/Rap1.pwm
  1123. share/ugene/position_weight_matrix/UniPROBE/GR09/Rdr1.pwm
  1124. share/ugene/position_weight_matrix/UniPROBE/GR09/Rds1.pwm
  1125. share/ugene/position_weight_matrix/UniPROBE/GR09/Rds2.pwm
  1126. share/ugene/position_weight_matrix/UniPROBE/GR09/Rgt1.pwm
  1127. share/ugene/position_weight_matrix/UniPROBE/GR09/Rph1.pwm
  1128. share/ugene/position_weight_matrix/UniPROBE/GR09/Rpn4.pwm
  1129. share/ugene/position_weight_matrix/UniPROBE/GR09/Rsc3.pwm
  1130. share/ugene/position_weight_matrix/UniPROBE/GR09/Rsc30.pwm
  1131. share/ugene/position_weight_matrix/UniPROBE/GR09/Rtg3.pwm
  1132. share/ugene/position_weight_matrix/UniPROBE/GR09/Sfl1.pwm
  1133. share/ugene/position_weight_matrix/UniPROBE/GR09/Sfp1.pwm
  1134. share/ugene/position_weight_matrix/UniPROBE/GR09/Sip4.pwm
  1135. share/ugene/position_weight_matrix/UniPROBE/GR09/Skn7.pwm
  1136. share/ugene/position_weight_matrix/UniPROBE/GR09/Smp1.pwm
  1137. share/ugene/position_weight_matrix/UniPROBE/GR09/Spt15.pwm
  1138. share/ugene/position_weight_matrix/UniPROBE/GR09/Srd1.pwm
  1139. share/ugene/position_weight_matrix/UniPROBE/GR09/Stb3.pwm
  1140. share/ugene/position_weight_matrix/UniPROBE/GR09/Stp2.pwm
  1141. share/ugene/position_weight_matrix/UniPROBE/GR09/Stp4.pwm
  1142. share/ugene/position_weight_matrix/UniPROBE/GR09/Sum1.pwm
  1143. share/ugene/position_weight_matrix/UniPROBE/GR09/Sut2.pwm
  1144. share/ugene/position_weight_matrix/UniPROBE/GR09/Tbf1.pwm
  1145. share/ugene/position_weight_matrix/UniPROBE/GR09/Tbs1.pwm
  1146. share/ugene/position_weight_matrix/UniPROBE/GR09/Tea1.pwm
  1147. share/ugene/position_weight_matrix/UniPROBE/GR09/Tec1.pwm
  1148. share/ugene/position_weight_matrix/UniPROBE/GR09/Tye7.pwm
  1149. share/ugene/position_weight_matrix/UniPROBE/GR09/Ume6.pwm
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  1462. share/ugene/workflow_samples/NGS/raw_ngs/dnaseq/dna_paired.uwl
  1463. share/ugene/workflow_samples/NGS/raw_ngs/dnaseq/dna_single.uwl
  1464. share/ugene/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_filtration_paired.uwl
  1465. share/ugene/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_filtration_single.uwl
  1466. share/ugene/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_paired.uwl
  1467. share/ugene/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_single.uwl
  1468. share/ugene/workflow_samples/NGS/raw_rna.uwl
  1469. share/ugene/workflow_samples/NGS/tuxedo/tuxedo_main.uwl
  1470. share/ugene/workflow_samples/NGS/tuxedo/tuxedo_main_paired.uwl
  1471. share/ugene/workflow_samples/NGS/tuxedo/tuxedo_no_novel_transcr.uwl
  1472. share/ugene/workflow_samples/NGS/tuxedo/tuxedo_no_novel_transcr_paired.uwl
  1473. share/ugene/workflow_samples/NGS/tuxedo/tuxedo_single_dataset.uwl
  1474. share/ugene/workflow_samples/NGS/tuxedo/tuxedo_single_dataset_paired.uwl
  1475. share/ugene/workflow_samples/NGS/unmapped_reads.uwl
  1476. share/ugene/workflow_samples/Sanger sequencing/trim-and-align.uwl
  1477. share/ugene/workflow_samples/Scenarios/filter_matched.uwl
  1478. share/ugene/workflow_samples/Scenarios/find_inverted_repeats.uwl
  1479. share/ugene/workflow_samples/Scenarios/find_sequences.uwl
  1480. share/ugene/workflow_samples/Scenarios/gene_by_gene_report.uwl
  1481. share/ugene/workflow_samples/Scenarios/group_primers_pairs.uwl
  1482. share/ugene/workflow_samples/Scenarios/intersect_annotations.uwl
  1483. share/ugene/workflow_samples/Scenarios/length_filter.uwl
  1484. share/ugene/workflow_samples/Scenarios/merge_sequence_annotation.uwl
  1485. share/ugene/workflow_samples/Scenarios/pcr.uwl
  1486. share/ugene/workflow_samples/Scenarios/remote_blasting.uwl
  1487. share/ugene/workflow_samples/Scenarios/translate_seq_and_compl.uwl
  1488. share/ugene/workflow_samples/Transcriptomics/SearchTFBS.uwl
  1489. share/ugene/workflow_samples/users/CASAVA FASTQ filter.usa
  1490. share/ugene/workflow_samples/users/Dump sequence info.usa
  1491. share/ugene/workflow_samples/users/FASTQ Trimmer.usa
  1492. share/ugene/workflow_samples/users/Get the first half of sequence.usa
  1493. share/ugene/workflow_samples/users/Get the second half of sequence.usa
  1494. share/ugene/workflow_samples/users/LengthMarker.usa
  1495. share/ugene/workflow_samples/users/LinkData Fetch.usa
  1496. share/ugene/workflow_samples/users/QualityFilter.usa
  1497. share/ugene/workflow_samples/users/Read one sequence.usa
  1498. Collapse this list.
Dependency lines:
  • ugene>0:biology/ugene

To install the port: cd /usr/ports/biology/ugene/ && make install clean
To add the package: pkg install ugene

PKGNAME: ugene

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1535840965
SHA256 (ugene/ugene-1.31.0.tar.gz) = d1f46306834a292618cc54b31060b69da5b0b18da311a55bf82ab42f5a434320
SIZE (ugene/ugene-1.31.0.tar.gz) = 20656562
SHA256 (ugene/QueryDesigner_UserManual.pdf) = 5d232c0de7e9d1fd32b8ee0a78f9f4abe1ab9d6536ec3958c47de29f3096faf4
SIZE (ugene/QueryDesigner_UserManual.pdf) = 855662
SHA256 (ugene/UniproUGENE_UserManual.pdf) = ae6aef32a6e92a30ba7c36cdd894a8caf634d678f15da7ad9eab52b6f40b9ed6
SIZE (ugene/UniproUGENE_UserManual.pdf) = 13443754
SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = 8cc6630f62c82de42926c14c3d01ebc3c7d85ab7d9ec2a81e55a19740806735c
SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 29474484


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. update-desktop-database : devel/desktop-file-utils
  2. update-mime-database : misc/shared-mime-info
  3. xorgproto>=0 : x11/xorgproto
  4. xorgproto>=0 : x11/xorgproto
  5. x11.pc : x11/libX11
  6. xtst.pc : x11/libXtst
  7. moc : devel/qt5-buildtools
  8. lrelease : devel/qt5-linguisttools
  9. qmake : devel/qt5-qmake
Runtime dependencies:
  1. bash : shells/bash
  2. update-desktop-database : devel/desktop-file-utils
  3. update-mime-database : misc/shared-mime-info
  4. x11.pc : x11/libX11
  5. xtst.pc : x11/libXtst
  6. libqtiff.so : graphics/qt5-imageformats
Library dependencies:
  1. libGL.so : graphics/mesa-libs
  2. libGLU.so : graphics/libGLU
  3. libQt5Core.so : devel/qt5-core
  4. libQt5Gui.so : x11-toolkits/qt5-gui
  5. libQt5Network.so : net/qt5-network
  6. libQt5OpenGL.so : graphics/qt5-opengl
  7. libQt5PrintSupport.so : print/qt5-printsupport
  8. libQt5Script.so : devel/qt5-script
  9. libQt5ScriptTools.so : devel/qt5-scripttools
  10. libQt5Sql.so : databases/qt5-sql
  11. libQt5Svg.so : graphics/qt5-svg
  12. libQt5Test.so : devel/qt5-testlib
  13. libQt5WebKit.so : www/qt5-webkit
  14. libQt5Widgets.so : x11-toolkits/qt5-widgets
  15. libQt5Xml.so : textproc/qt5-xml
There are no ports dependent upon this port

Configuration Options
===> The following configuration options are available for ugene-1.31.0_1:
     DOCS=on: Install official UGENE documentation (PDF)
     OPENCL=off: Heterogeneous computing via OpenCL
===> Use 'make config' to modify these settings

USES:
desktop-file-utils qmake qt:5 shared-mime-info gl

Master Sites:
  1. http://ugene.unipro.ru/downloads/

Number of commits found: 37

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
16 Jan 2019 11:13:45
Original commit files touched by this commit  1.31.0_1
Revision:490472
tijl search for other commits by this committer
Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
(Only the first 15 lines of the commit message are shown above View all of this commit message)
16 Dec 2018 14:49:16
Original commit files touched by this commit  1.31.0
Revision:487594
tcberner search for other commits by this committer
Update Qt5 to 5.12.0

http://blog.qt.io/blog/2018/12/06/qt-5-12-lts-released/

- This breaks support for libressl again. Patches are welcome.

PR:		233705
Exp-run by:	antoine
02 Sep 2018 20:47:15
Original commit files touched by this commit  1.31.0
Revision:478818
jhale search for other commits by this committer
Update to 1.31.0

PR:		229463
Approved by:	Hannes Hauswedell <h2+fbsdports@fsfe.org> (maintainer)
28 Jun 2018 17:39:55
Original commit files touched by this commit  1.22.0_3
Revision:473503
tcberner search for other commits by this committer
Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540
15 May 2018 18:51:51
Original commit files touched by this commit  1.22.0_3
Revision:470045
rakuco search for other commits by this committer
Add upstream patch to fix the build with Qt 5.10.

    _tmp/ui/ui_Bowtie2Settings.h:189:35: error: no viable conversion from
'QLatin1String' to 'const QKeySequence'
            gbarCheckBox->setShortcut(QLatin1String(""));
                                      ^~~~~~~~~~~~~~~~~

PR:		228213
06 Jan 2018 21:30:33
Original commit files touched by this commit  1.22.0_2
Revision:458293
rakuco search for other commits by this committer
Update Qt5 ports to 5.9.3.

This took quite a lot of time because Qt's own build system underwent
several changes in 5.8.0 that took a while to adapt to.

And, of course, qt5-webengine is a behemoth that we need to patch like crazy
due to its bundling of Chromium. In fact, most of the Chromium patches in
qt5-webengine have been imported with no changes from www/chromium@433510
("www/chromium: update to 56.0.2924.87").

New port: accessibility/qt5-speech

Bigger changes to Qt5 ports we had to make:
- Qt now allows using a configure.json file to define configuration options
  and specify configuration checks that can be done when qmake is invoked.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
22 Sep 2017 10:48:29
Original commit files touched by this commit  1.22.0_2
Revision:450351
mat search for other commits by this committer
Remove USES=execinfo.

PR:		220271
Submitted by:	mat (review), Yasuhiro KIMURA (PR)
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D11488
23 May 2017 05:03:16
Original commit files touched by this commit  1.22.0_2
Revision:441503
rezny search for other commits by this committer
Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
09 Jan 2017 13:16:50
Original commit files touched by this commit  1.22.0_1
Revision:430947
amdmi3 search for other commits by this committer
- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL

Approved by:	portmgr blanket
08 Nov 2016 19:29:57
Original commit files touched by this commit  1.22.0_1
Revision:425758
linimon search for other commits by this committer
The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.
08 Nov 2016 07:20:38
Original commit files touched by this commit  1.22.0_1
Revision:425689
linimon search for other commits by this committer
Mark as broken on arm64.

Approved by:	portmgr (tier-2 blanket)
07 May 2016 19:38:53
Original commit files touched by this commit  1.22.0_1
Revision:414784
dim search for other commits by this committer
During the exp-run in bug 208158, it was found that biology/ugene gives
errors with libc++ 3.8.0:

In file included from src/QScoreAdapter.cpp:1:
In file included from src/QScoreAdapter.h:4:
In file included from ../../include/U2Core/MAlignment.h:1:
In file included from
../../include/U2Core/../../corelibs/U2Core/src/datatype/MAlignment.h:25:
In file included from
../../include/U2Core/../../corelibs/U2Core/src/datatype/MAlignmentInfo.h:25:
In file included from /usr/local/include/qt5/QtCore/QString:1:
In file included from /usr/local/include/qt5/QtCore/qstring.h:41:
In file included from /usr/local/include/qt5/QtCore/qchar.h:37:
In file included from /usr/local/include/qt5/QtCore/qglobal.h:39:
/usr/include/c++/v1/cstddef:43:15: fatal error: 'stddef.h' file not found
#include_next <stddef.h>
              ^

This is because the port tries to add /usr/include as a system include
directory, using -isystem, and this screws up the order of include
directories.  Fix it by patching up a number of .pri files to avoid
using the -isystem flag.

Approved by:	h2+fbsdports@fsfe.org (maintainer)
PR:		209366
MFH:		2016Q2
14 Apr 2016 04:07:44
Original commit files touched by this commit  1.22.0
Revision:413242
danfe search for other commits by this committer
Update to version 1.22.0, which now unfortunately requires Qt 5.x.  Also
since around v1.18.0, UGENE is using Google's Breakpad library for crash
reporting, which is very system-specific and does not support FreeBSD at
the moment.  Due to lack of resources and interest in porting it, simply
disable crash reporting code for the time being.
01 Apr 2016 13:29:17
Original commit files touched by this commit  1.17.0_1
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
18 Aug 2015 20:02:46
Original commit files touched by this commit  1.17.0_1
Revision:394652
pgollucci search for other commits by this committer
biology/ugene: qt4-linguist -> qt4-linguisttools

- add USES=desktop-file-utils

PR:                  202138
Submitted by:        s3erios@gmail.com
Approved by:         h2+fbsdports@fsfe.org
15 Jul 2015 07:18:09
Original commit files touched by this commit  1.17.0
Revision:392119
danfe search for other commits by this committer
- Update Unipro UGENE to version 1.17.0 (documentation was also rerolled)
- Remove no longer required local source code tweaks (picked up upstream)
28 May 2015 08:12:00
Original commit files touched by this commit  1.16.2
Revision:387709
danfe search for other commits by this committer
Update Unipro UGENE to version 1.16.2.
23 Mar 2015 01:44:44
Original commit files touched by this commit  1.16.1
Revision:381974
danfe search for other commits by this committer
- Update to version 1.16.1
- Explicitly list all required Qt components in USE_QT4 instead of relying
  on them being silently picked up through `www/webkit-qt4' dependency
- Group *_build components together while here
- Remove one REINPLACE_CMD call that is no longer needed
24 Feb 2015 11:42:54
Original commit files touched by this commit  1.16.0
Revision:379787
danfe search for other commits by this committer
Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).
06 Jan 2015 05:28:59
Original commit files touched by this commit  1.15.1
Revision:376383
danfe search for other commits by this committer
Update to version 1.15.1.
03 Dec 2014 01:40:55
Original commit files touched by this commit  1.15.0
Revision:373799
danfe search for other commits by this committer
Update to version 1.15.0.
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.14.2
Revision:371237
bapt search for other commits by this committer
Cleanup plist
13 Oct 2014 11:01:52
Original commit files touched by this commit  1.14.2
Revision:370764
danfe search for other commits by this committer
Update to version 1.14.2.
10 Sep 2014 20:50:37
Original commit files touched by this commit  1.14.0_1
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
01 Sep 2014 07:39:00
Original commit files touched by this commit  1.14.0
Revision:366842
danfe search for other commits by this committer
- Update Unipro UGENE and documentation to version 1.14.0
- Remove patches integrated upstream (it's nice to have direct contact)
- Sort USES and pkg-plist, cleanup Makefile a bit while here

Approved by:	maintainer (implicit)
04 Aug 2014 23:06:21
Original commit files touched by this commit  1.13.1
Revision:364067
bapt search for other commits by this committer
USES=execinfo
07 Mar 2014 07:39:21
Original commit files touched by this commit  1.13.1
Revision:347340
danfe search for other commits by this committer
Update to version 1.13.1.
30 Jan 2014 13:38:26
Original commit files touched by this commit  1.13.0
Revision:341837
danfe search for other commits by this committer
Unbreak the fetch: one of the documentation PDF files was rerolled.
30 Jan 2014 13:11:41
Original commit files touched by this commit  1.13.0
Revision:341835
decke search for other commits by this committer
- Mark BROKEN because it does not fetch
16 Jan 2014 17:17:16
Original commit files touched by this commit  1.13.0
Revision:339938
danfe search for other commits by this committer
- Update to version 1.13.0 and improve FreeBSD support; it also builds
  pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings)
- Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR,
  and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets
  sanity checking tools; instead, list the docs explicitly in DISTFILES
  and add them to pkg-plist (guarded by %%PORTDOCS%%)

Tested on:	i386 (only)
01 Nov 2013 15:20:29
Original commit files touched by this commit  1.12.3
Revision:332391
danfe search for other commits by this committer
- Install official UGENE documentation (PDF)
- Utilize DIST_SUBDIR as now it's more than one distfile
31 Oct 2013 15:30:04
Original commit files touched by this commit  1.12.3
Revision:332256
danfe search for other commits by this committer
- Update to version 1.12.3
- Conditionalize dependency on `devel/libexecinfo'
- Try to detect SSE2 support
- Convert to USES=qmake and stafigy
- Improve grammar in port description while here

Approved by:	maintainer (implicit)
22 Oct 2013 13:57:35
Original commit files touched by this commit  1.11.4
Revision:331271
amdmi3 search for other commits by this committer
- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [bce])

Approved by:	portmgr (bdrewery)
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.11.4
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
14 Aug 2013 22:35:54
Original commit files touched by this commit  1.11.4
Revision:324744  Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
25 Feb 2013 13:00:16
Original commit files touched by this commit  1.11.4
Revision:312918
danfe search for other commits by this committer
Unbreak on 7.X and i386 systems.

Reported by:	QAT
23 Feb 2013 04:50:48
Original commit files touched by this commit  1.11.4
Revision:312798
danfe search for other commits by this committer
Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.

PR:		ports/173387
Submitted by:	Hannes Hauswedell

Number of commits found: 37

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