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Port details
libsedml C++ SED-ML library
2.0.32 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.32Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-09-19 18:18:23
Last Update: 2023-05-27 04:24:05
Commit Hash: 64e4fe1
Also Listed In: devel
License: BSD2CLAUSE
WWW:
https://github.com/fbergmann/libSEDML
Description:
The libSEDML project makes use of libSBML XML layer as well as code generation as starting point to produce a library for reading and writing of SED-ML models.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (126 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/libsedml-2.0.32/catalog.mk
  3. /usr/local/share/licenses/libsedml-2.0.32/LICENSE
  4. /usr/local/share/licenses/libsedml-2.0.32/BSD2CLAUSE
  5. include/sedml/SedAbstractCurve.h
  6. include/sedml/SedAbstractTask.h
  7. include/sedml/SedAddXML.h
  8. include/sedml/SedAdjustableParameter.h
  9. include/sedml/SedAlgorithm.h
  10. include/sedml/SedAlgorithmParameter.h
  11. include/sedml/SedAnalysis.h
  12. include/sedml/SedAppliedDimension.h
  13. include/sedml/SedAxis.h
  14. include/sedml/SedBase.h
  15. include/sedml/SedBounds.h
  16. include/sedml/SedChange.h
  17. include/sedml/SedChangeAttribute.h
  18. include/sedml/SedChangeXML.h
  19. include/sedml/SedComputeChange.h
  20. include/sedml/SedConstructorException.h
  21. include/sedml/SedCurve.h
  22. include/sedml/SedDataDescription.h
  23. include/sedml/SedDataGenerator.h
  24. include/sedml/SedDataRange.h
  25. include/sedml/SedDataSet.h
  26. include/sedml/SedDataSource.h
  27. include/sedml/SedDocument.h
  28. include/sedml/SedElementFilter.h
  29. include/sedml/SedError.h
  30. include/sedml/SedErrorLog.h
  31. include/sedml/SedErrorTable.h
  32. include/sedml/SedExperimentReference.h
  33. include/sedml/SedFigure.h
  34. include/sedml/SedFill.h
  35. include/sedml/SedFitExperiment.h
  36. include/sedml/SedFitMapping.h
  37. include/sedml/SedFunctionalRange.h
  38. include/sedml/SedLeastSquareObjectiveFunction.h
  39. include/sedml/SedLine.h
  40. include/sedml/SedListOf.h
  41. include/sedml/SedListOfAdjustableParameters.h
  42. include/sedml/SedListOfAlgorithmParameters.h
  43. include/sedml/SedListOfAppliedDimensions.h
  44. include/sedml/SedListOfChanges.h
  45. include/sedml/SedListOfCurves.h
  46. include/sedml/SedListOfDataDescriptions.h
  47. include/sedml/SedListOfDataGenerators.h
  48. include/sedml/SedListOfDataSets.h
  49. include/sedml/SedListOfDataSources.h
  50. include/sedml/SedListOfExperimentReferences.h
  51. include/sedml/SedListOfFitExperiments.h
  52. include/sedml/SedListOfFitMappings.h
  53. include/sedml/SedListOfModels.h
  54. include/sedml/SedListOfOutputs.h
  55. include/sedml/SedListOfParameters.h
  56. include/sedml/SedListOfRanges.h
  57. include/sedml/SedListOfSetValues.h
  58. include/sedml/SedListOfSimulations.h
  59. include/sedml/SedListOfSlices.h
  60. include/sedml/SedListOfStyles.h
  61. include/sedml/SedListOfSubPlots.h
  62. include/sedml/SedListOfSubTasks.h
  63. include/sedml/SedListOfSurfaces.h
  64. include/sedml/SedListOfTasks.h
  65. include/sedml/SedListOfVariables.h
  66. include/sedml/SedMarker.h
  67. include/sedml/SedModel.h
  68. include/sedml/SedNamespaces.h
  69. include/sedml/SedObjective.h
  70. include/sedml/SedOneStep.h
  71. include/sedml/SedOutput.h
  72. include/sedml/SedParameter.h
  73. include/sedml/SedParameterEstimationReport.h
  74. include/sedml/SedParameterEstimationResultPlot.h
  75. include/sedml/SedParameterEstimationTask.h
  76. include/sedml/SedPlot.h
  77. include/sedml/SedPlot2D.h
  78. include/sedml/SedPlot3D.h
  79. include/sedml/SedRange.h
  80. include/sedml/SedReader.h
  81. include/sedml/SedRemoveXML.h
  82. include/sedml/SedRepeatedTask.h
  83. include/sedml/SedReport.h
  84. include/sedml/SedSetValue.h
  85. include/sedml/SedShadedArea.h
  86. include/sedml/SedSimulation.h
  87. include/sedml/SedSlice.h
  88. include/sedml/SedSteadyState.h
  89. include/sedml/SedStyle.h
  90. include/sedml/SedSubPlot.h
  91. include/sedml/SedSubTask.h
  92. include/sedml/SedSurface.h
  93. include/sedml/SedTask.h
  94. include/sedml/SedTypeCodes.h
  95. include/sedml/SedTypes.h
  96. include/sedml/SedUniformRange.h
  97. include/sedml/SedUniformTimeCourse.h
  98. include/sedml/SedVariable.h
  99. include/sedml/SedVectorRange.h
  100. include/sedml/SedVisitor.h
  101. include/sedml/SedWaterfallPlot.h
  102. include/sedml/SedWriter.h
  103. include/sedml/common/SedOperationReturnValues.h
  104. include/sedml/common/SedmlEnumerations.h
  105. include/sedml/common/common.h
  106. include/sedml/common/extern.h
  107. include/sedml/common/libsedml-config-common.h
  108. include/sedml/common/libsedml-config.h
  109. include/sedml/common/libsedml-namespace.h
  110. include/sedml/common/libsedml-version.h
  111. include/sedml/common/sedmlfwd.h
  112. lib/cmake/sedml-config-version.cmake
  113. lib/cmake/sedml-config.cmake
  114. lib/cmake/sedml-static-config-version.cmake
  115. lib/cmake/sedml-static-config.cmake
  116. lib/cmake/sedml-static-targets-release.cmake
  117. lib/cmake/sedml-static-targets.cmake
  118. lib/cmake/sedml-targets-release.cmake
  119. lib/cmake/sedml-targets.cmake
  120. lib/libsedml-static.a
  121. lib/libsedml.so
  122. lib/libsedml.so.2
  123. lib/libsedml.so.2.0.32
  124. @owner
  125. @group
  126. @mode
Collapse this list.
Dependency lines:
  • libsedml>0:biology/libsedml
To install the port:
cd /usr/ports/biology/libsedml/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/libsedml
  • pkg install libsedml
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: libsedml
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1654751397 SHA256 (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 95f0781c19e73bb86618cce1678f4238f3cc11abe070b49f2a25e869071b8069 SIZE (fbergmann-libSEDML-v2.0.32_GH0.tar.gz) = 966584

Packages (timestamps in pop-ups are UTC):
libsedml
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.0.322.0.32-2.0.322.0.32---
FreeBSD:13:quarterly2.0.322.0.322.0.322.0.322.0.322.0.322.0.322.0.32
FreeBSD:14:latest2.0.322.0.322.0.322.0.322.0.322.0.32-2.0.32
FreeBSD:14:quarterly2.0.322.0.32-2.0.322.0.322.0.322.0.322.0.32
FreeBSD:15:latest2.0.322.0.32n/a2.0.32n/a2.0.322.0.322.0.32
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. libsbml>0 : biology/libsbml
  2. libnuml>0 : biology/libnuml
  3. cmake : devel/cmake-core
  4. ninja : devel/ninja
Runtime dependencies:
  1. libsbml>0 : biology/libsbml
  2. libnuml>0 : biology/libnuml
Library dependencies:
  1. libxml2.so : textproc/libxml2
This port is required by:
for Libraries
  1. biology/py-libsedml

Configuration Options:
No options to configure
Options name:
biology_libsedml
USES:
cmake compiler:c++11-lang gnome
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/fbergmann/libSEDML/tar.gz/v2.0.32?dummy=/
Collapse this list.

Number of commits found: 11

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.0.32
27 May 2023 04:24:05
commit hash: 64e4fe193ce5a65a0369fc14c94d2d00aa51d32ccommit hash: 64e4fe193ce5a65a0369fc14c94d2d00aa51d32ccommit hash: 64e4fe193ce5a65a0369fc14c94d2d00aa51d32ccommit hash: 64e4fe193ce5a65a0369fc14c94d2d00aa51d32c files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
biology/libsedml: Fix build with libsbml 5.20.0

===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/libsedml/work/.build
-- The CXX compiler identification is Clang 13.0.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so - found
(Only the first 15 lines of the commit message are shown above View all of this commit message)
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.0.32
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.32
09 Jun 2022 05:53:28
commit hash: 5432af73031a5bc1c503c0398db5f8661e5d6c87commit hash: 5432af73031a5bc1c503c0398db5f8661e5d6c87commit hash: 5432af73031a5bc1c503c0398db5f8661e5d6c87commit hash: 5432af73031a5bc1c503c0398db5f8661e5d6c87 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/{,py-}libsedml: Update 2.0.31 -> 2.0.32

Reported by:	portscout
2.0.31
22 Apr 2022 18:04:38
commit hash: 1c92a5a1dac90ce219018b2c8f95a50a084a2b85commit hash: 1c92a5a1dac90ce219018b2c8f95a50a084a2b85commit hash: 1c92a5a1dac90ce219018b2c8f95a50a084a2b85commit hash: 1c92a5a1dac90ce219018b2c8f95a50a084a2b85 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/{,py-}libsedml: Update 2.0.30 -> 2.0.31

Reported by:	portscout
2.0.30_1
10 Apr 2022 19:11:41
commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744commit hash: d63665f7cd9c99880704a3c5bc221829cb009744 files touched by this commit
Charlie Li (vishwin) search for other commits by this committer
textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)
2.0.30
07 Apr 2022 20:19:03
commit hash: 53aca1ad848e878e4aa5740fe85f0cd811b65fb2commit hash: 53aca1ad848e878e4aa5740fe85f0cd811b65fb2commit hash: 53aca1ad848e878e4aa5740fe85f0cd811b65fb2commit hash: 53aca1ad848e878e4aa5740fe85f0cd811b65fb2 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/{,py-}libsedml: Update 2.0.28 -> 2.0.30

Reported by:	portscout
2.0.28_1
26 Mar 2022 08:27:27
commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52commit hash: 247c7db7513f1264922428278678da641c5a3f52 files touched by this commit
Matthias Fechner (mfechner) search for other commits by this committer
textproc/libxml2: bump all dependencies

This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246
2.0.28
06 Mar 2022 02:15:32
commit hash: ed361a72e0c26030a0a4ce61c75dfc75ee4de5eecommit hash: ed361a72e0c26030a0a4ce61c75dfc75ee4de5eecommit hash: ed361a72e0c26030a0a4ce61c75dfc75ee4de5eecommit hash: ed361a72e0c26030a0a4ce61c75dfc75ee4de5ee files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/{,py-}libsedml: Update 2.0.27 -> 2.0.28

Reported by:	portscout
2.0.27
17 Feb 2022 00:27:20
commit hash: 9b5fb666109428e0dfcf75b52e423d45b0fefe6acommit hash: 9b5fb666109428e0dfcf75b52e423d45b0fefe6acommit hash: 9b5fb666109428e0dfcf75b52e423d45b0fefe6acommit hash: 9b5fb666109428e0dfcf75b52e423d45b0fefe6a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/{,py-}libsedml: Update 2.0.26 -> 2.0.27
2.0.26
19 Sep 2021 18:15:35
commit hash: dd804e98719a5c2376d15b79e6b745f45ab1de40commit hash: dd804e98719a5c2376d15b79e6b745f45ab1de40commit hash: dd804e98719a5c2376d15b79e6b745f45ab1de40commit hash: dd804e98719a5c2376d15b79e6b745f45ab1de40 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/libsedml: New port: C++ SED-ML library

Number of commits found: 11