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Port details
libsbml API Library for Working with SBML File
5.15.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 May 2009 23:36:42
Also Listed In: devel
License: LGPL21
LibSBML is an open-source programming library to help you read, write,
manipulate, translate, and validate SBML files and data streams. It is
not an application itself (though it does come with example programs),
but rather a library you can embed in your own applications.

LibSBML understands all Levels and Versions of SBML, as well as the
SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in
ISO C and C++ but can be used from all the languages listed in the
right-hand box.

WWW: http://www.sbml.org/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (540 items)
  1. /usr/local/share/licenses/libsbml-5.15.0/catalog.mk
  2. /usr/local/share/licenses/libsbml-5.15.0/LICENSE
  3. /usr/local/share/licenses/libsbml-5.15.0/LGPL21
  4. include/sbml/AlgebraicRule.h
  5. include/sbml/AssignmentRule.h
  6. include/sbml/Compartment.h
  7. include/sbml/CompartmentType.h
  8. include/sbml/Constraint.h
  9. include/sbml/Delay.h
  10. include/sbml/Event.h
  11. include/sbml/EventAssignment.h
  12. include/sbml/ExpectedAttributes.h
  13. include/sbml/FunctionDefinition.h
  14. include/sbml/InitialAssignment.h
  15. include/sbml/KineticLaw.h
  16. include/sbml/ListOf.h
  17. include/sbml/LocalParameter.h
  18. include/sbml/Model.h
  19. include/sbml/ModifierSpeciesReference.h
  20. include/sbml/Parameter.h
  21. include/sbml/Priority.h
  22. include/sbml/RateRule.h
  23. include/sbml/Reaction.h
  24. include/sbml/Rule.h
  25. include/sbml/SBMLConstructorException.h
  26. include/sbml/SBMLDocument.h
  27. include/sbml/SBMLError.h
  28. include/sbml/SBMLErrorLog.h
  29. include/sbml/SBMLErrorTable.h
  30. include/sbml/SBMLNamespaces.h
  31. include/sbml/SBMLReader.h
  32. include/sbml/SBMLTransforms.h
  33. include/sbml/SBMLTypeCodes.h
  34. include/sbml/SBMLTypes.h
  35. include/sbml/SBMLVisitor.h
  36. include/sbml/SBMLWriter.h
  37. include/sbml/SBO.h
  38. include/sbml/SBase.h
  39. include/sbml/SimpleSpeciesReference.h
  40. include/sbml/Species.h
  41. include/sbml/SpeciesReference.h
  42. include/sbml/SpeciesType.h
  43. include/sbml/StoichiometryMath.h
  44. include/sbml/SyntaxChecker.h
  45. include/sbml/Trigger.h
  46. include/sbml/Unit.h
  47. include/sbml/UnitDefinition.h
  48. include/sbml/UnitKind.h
  49. include/sbml/annotation/CVTerm.h
  50. include/sbml/annotation/Date.h
  51. include/sbml/annotation/ModelCreator.h
  52. include/sbml/annotation/ModelHistory.h
  53. include/sbml/annotation/RDFAnnotation.h
  54. include/sbml/annotation/RDFAnnotationParser.h
  55. include/sbml/common/common-documentation.h
  56. include/sbml/common/common-sbmlerror-codes.h
  57. include/sbml/common/common.h
  58. include/sbml/common/extern.h
  59. include/sbml/common/libsbml-config-common.h
  60. include/sbml/common/libsbml-config-packages.h
  61. include/sbml/common/libsbml-config.h
  62. include/sbml/common/libsbml-namespace.h
  63. include/sbml/common/libsbml-package.h
  64. include/sbml/common/libsbml-version.h
  65. include/sbml/common/operationReturnValues.h
  66. include/sbml/common/sbmlfwd.h
  67. include/sbml/compress/CompressCommon.h
  68. include/sbml/compress/InputDecompressor.h
  69. include/sbml/compress/OutputCompressor.h
  70. include/sbml/compress/bzfstream.h
  71. include/sbml/compress/crypt.h
  72. include/sbml/compress/ioapi.h
  73. include/sbml/compress/ioapi_mem.h
  74. include/sbml/compress/iowin32.h
  75. include/sbml/compress/unzip.h
  76. include/sbml/compress/zfstream.h
  77. include/sbml/compress/zip.h
  78. include/sbml/compress/zipfstream.h
  79. include/sbml/conversion/ConversionOption.h
  80. include/sbml/conversion/ConversionProperties.h
  81. include/sbml/conversion/SBMLConverter.h
  82. include/sbml/conversion/SBMLConverterRegister.h
  83. include/sbml/conversion/SBMLConverterRegistry.h
  84. include/sbml/conversion/SBMLFunctionDefinitionConverter.h
  85. include/sbml/conversion/SBMLIdConverter.h
  86. include/sbml/conversion/SBMLInferUnitsConverter.h
  87. include/sbml/conversion/SBMLInitialAssignmentConverter.h
  88. include/sbml/conversion/SBMLLevel1Version1Converter.h
  89. include/sbml/conversion/SBMLLevelVersionConverter.h
  90. include/sbml/conversion/SBMLLocalParameterConverter.h
  91. include/sbml/conversion/SBMLRateOfConverter.h
  92. include/sbml/conversion/SBMLReactionConverter.h
  93. include/sbml/conversion/SBMLRuleConverter.h
  94. include/sbml/conversion/SBMLStripPackageConverter.h
  95. include/sbml/conversion/SBMLUnitsConverter.h
  96. include/sbml/extension/ASTBasePlugin.h
  97. include/sbml/extension/ISBMLExtensionNamespaces.h
  98. include/sbml/extension/RegisterExtensions.h
  99. include/sbml/extension/SBMLDocumentPlugin.h
  100. include/sbml/extension/SBMLDocumentPluginNotRequired.h
  101. include/sbml/extension/SBMLExtension.h
  102. include/sbml/extension/SBMLExtensionException.h
  103. include/sbml/extension/SBMLExtensionNamespaces.h
  104. include/sbml/extension/SBMLExtensionRegister.h
  105. include/sbml/extension/SBMLExtensionRegistry.h
  106. include/sbml/extension/SBaseExtensionPoint.h
  107. include/sbml/extension/SBasePlugin.h
  108. include/sbml/extension/SBasePluginCreator.h
  109. include/sbml/extension/SBasePluginCreatorBase.h
  110. include/sbml/math/ASTBase.h
  111. include/sbml/math/ASTBinaryFunctionNode.h
  112. include/sbml/math/ASTCSymbol.h
  113. include/sbml/math/ASTCSymbolAvogadroNode.h
  114. include/sbml/math/ASTCSymbolDelayNode.h
  115. include/sbml/math/ASTCSymbolRateOfNode.h
  116. include/sbml/math/ASTCSymbolTimeNode.h
  117. include/sbml/math/ASTCiFunctionNode.h
  118. include/sbml/math/ASTCiNumberNode.h
  119. include/sbml/math/ASTCnBase.h
  120. include/sbml/math/ASTCnExponentialNode.h
  121. include/sbml/math/ASTCnIntegerNode.h
  122. include/sbml/math/ASTCnRationalNode.h
  123. include/sbml/math/ASTCnRealNode.h
  124. include/sbml/math/ASTConstantNumberNode.h
  125. include/sbml/math/ASTFunction.h
  126. include/sbml/math/ASTFunctionBase.h
  127. include/sbml/math/ASTLambdaFunctionNode.h
  128. include/sbml/math/ASTNaryFunctionNode.h
  129. include/sbml/math/ASTNode.h
  130. include/sbml/math/ASTNumber.h
  131. include/sbml/math/ASTPiecewiseFunctionNode.h
  132. include/sbml/math/ASTQualifierNode.h
  133. include/sbml/math/ASTSemanticsNode.h
  134. include/sbml/math/ASTTypes.h
  135. include/sbml/math/ASTUnaryFunctionNode.h
  136. include/sbml/math/FormulaFormatter.h
  137. include/sbml/math/FormulaParser.h
  138. include/sbml/math/FormulaTokenizer.h
  139. include/sbml/math/L3FormulaFormatter.h
  140. include/sbml/math/L3Parser.h
  141. include/sbml/math/L3ParserSettings.h
  142. include/sbml/math/MathML.h
  143. include/sbml/units/FormulaUnitsData.h
  144. include/sbml/units/UnitFormulaFormatter.h
  145. include/sbml/units/UnitKindList.h
  146. include/sbml/util/ElementFilter.h
  147. include/sbml/util/IdFilter.h
  148. include/sbml/util/IdList.h
  149. include/sbml/util/IdentifierTransformer.h
  150. include/sbml/util/List.h
  151. include/sbml/util/MetaIdFilter.h
  152. include/sbml/util/PrefixTransformer.h
  153. include/sbml/util/Stack.h
  154. include/sbml/util/StringBuffer.h
  155. include/sbml/util/memory.h
  156. include/sbml/util/util.h
  157. include/sbml/validator/ConsistencyValidator.h
  158. include/sbml/validator/ConstraintMacros.h
  159. include/sbml/validator/IdentifierConsistencyValidator.h
  160. include/sbml/validator/InternalConsistencyValidator.h
  161. include/sbml/validator/L1CompatibilityValidator.h
  162. include/sbml/validator/L2v1CompatibilityValidator.h
  163. include/sbml/validator/L2v2CompatibilityValidator.h
  164. include/sbml/validator/L2v3CompatibilityValidator.h
  165. include/sbml/validator/L2v4CompatibilityValidator.h
  166. include/sbml/validator/L3v1CompatibilityValidator.h
  167. include/sbml/validator/L3v2CompatibilityValidator.h
  168. include/sbml/validator/MathMLConsistencyValidator.h
  169. include/sbml/validator/ModelingPracticeValidator.h
  170. include/sbml/validator/OverdeterminedValidator.h
  171. include/sbml/validator/SBMLExternalValidator.h
  172. include/sbml/validator/SBMLInternalValidator.h
  173. include/sbml/validator/SBMLValidator.h
  174. include/sbml/validator/SBOConsistencyValidator.h
  175. include/sbml/validator/StrictUnitConsistencyValidator.h
  176. include/sbml/validator/UnitConsistencyValidator.h
  177. include/sbml/validator/VConstraint.h
  178. include/sbml/validator/Validator.h
  179. include/sbml/xml/ExpatAttributes.h
  180. include/sbml/xml/ExpatHandler.h
  181. include/sbml/xml/ExpatParser.h
  182. include/sbml/xml/LibXMLAttributes.h
  183. include/sbml/xml/LibXMLHandler.h
  184. include/sbml/xml/LibXMLNamespaces.h
  185. include/sbml/xml/LibXMLParser.h
  186. include/sbml/xml/LibXMLTranscode.h
  187. include/sbml/xml/XMLAttributes.h
  188. include/sbml/xml/XMLBuffer.h
  189. include/sbml/xml/XMLConstructorException.h
  190. include/sbml/xml/XMLError.h
  191. include/sbml/xml/XMLErrorLog.h
  192. include/sbml/xml/XMLExtern.h
  193. include/sbml/xml/XMLFileBuffer.h
  194. include/sbml/xml/XMLHandler.h
  195. include/sbml/xml/XMLInputStream.h
  196. include/sbml/xml/XMLLogOverride.h
  197. include/sbml/xml/XMLMemoryBuffer.h
  198. include/sbml/xml/XMLNamespaces.h
  199. include/sbml/xml/XMLNode.h
  200. include/sbml/xml/XMLOutputStream.h
  201. include/sbml/xml/XMLParser.h
  202. include/sbml/xml/XMLToken.h
  203. include/sbml/xml/XMLTokenizer.h
  204. include/sbml/xml/XMLTriple.h
  205. include/sbml/xml/XercesAttributes.h
  206. include/sbml/xml/XercesHandler.h
  207. include/sbml/xml/XercesNamespaces.h
  208. include/sbml/xml/XercesParser.h
  209. include/sbml/xml/XercesTranscode.h
  210. lib/libsbml-static.a
  211. lib/libsbml.so
  212. lib/libsbml.so.5
  213. lib/libsbml.so.5.15.0
  214. libdata/pkgconfig/libsbml.pc
  215. lib/cmake/sbml-config-release.cmake
  216. lib/cmake/sbml-config-version.cmake
  217. lib/cmake/sbml-config.cmake
  218. lib/cmake/sbml-static-config-release.cmake
  219. lib/cmake/sbml-static-config-version.cmake
  220. lib/cmake/sbml-static-config.cmake
  221. @comment %%PYTHON_SITELIBDIR%%/libsbml.pth
  222. @comment %%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so
  223. @comment %%PYTHON_SITELIBDIR%%/libsbml/libsbml.py
  224. @comment %%RUBY_SITEARCHLIBDIR%%/libSBML.so
  225. share/examples/libsbml/CMakeLists.txt
  226. share/examples/libsbml/README.txt
  227. share/examples/libsbml/c/CMakeLists.txt
  228. share/examples/libsbml/c/FormulaGraphvizFormatter.h
  229. share/examples/libsbml/c/addCVTerms.c
  230. share/examples/libsbml/c/addModelHistory.c
  231. share/examples/libsbml/c/addingEvidenceCodes_1.c
  232. share/examples/libsbml/c/addingEvidenceCodes_2.c
  233. share/examples/libsbml/c/appendAnnotation.c
  234. share/examples/libsbml/c/convertSBML.c
  235. share/examples/libsbml/c/createExampleSBML.c
  236. share/examples/libsbml/c/drawMath.c
  237. share/examples/libsbml/c/echoSBML.c
  238. share/examples/libsbml/c/evaluateMath.c
  239. share/examples/libsbml/c/printAnnotation.c
  240. share/examples/libsbml/c/printMath.c
  241. share/examples/libsbml/c/printNotes.c
  242. share/examples/libsbml/c/printRegisteredPackages.c
  243. share/examples/libsbml/c/printSBML.c
  244. share/examples/libsbml/c/printSupported.c
  245. share/examples/libsbml/c/printUnits.c
  246. share/examples/libsbml/c/promoteParameters.c
  247. share/examples/libsbml/c/readSBML.c
  248. share/examples/libsbml/c/stripPackage.c
  249. share/examples/libsbml/c/translateL3Math.c
  250. share/examples/libsbml/c/translateMath.c
  251. share/examples/libsbml/c/unsetAnnotation.c
  252. share/examples/libsbml/c/unsetNotes.c
  253. share/examples/libsbml/c/util.c
  254. share/examples/libsbml/c/util.h
  255. share/examples/libsbml/c/validateSBML.c
  256. share/examples/libsbml/c++/CMakeLists.txt
  257. share/examples/libsbml/c++/addCVTerms.cpp
  258. share/examples/libsbml/c++/addCustomValidator.cpp
  259. share/examples/libsbml/c++/addModelHistory.cpp
  260. share/examples/libsbml/c++/addingEvidenceCodes_1.cpp
  261. share/examples/libsbml/c++/addingEvidenceCodes_2.cpp
  262. share/examples/libsbml/c++/appendAnnotation.cpp
  263. share/examples/libsbml/c++/callExternalValidator.cpp
  264. share/examples/libsbml/c++/convertReactions.cpp
  265. share/examples/libsbml/c++/convertSBML.cpp
  266. share/examples/libsbml/c++/convertToL1V1.cpp
  267. share/examples/libsbml/c++/createExampleSBML.cpp
  268. share/examples/libsbml/c++/echoSBML.cpp
  269. share/examples/libsbml/c++/getAllElementsWithNotes.cpp
  270. share/examples/libsbml/c++/inferUnits.cpp
  271. share/examples/libsbml/c++/inlineFunctionDefintions.cpp
  272. share/examples/libsbml/c++/layout/CMakeLists.txt
  273. share/examples/libsbml/c++/layout/addLayout.cpp
  274. share/examples/libsbml/c++/layout/convertLayout.cpp
  275. share/examples/libsbml/c++/layout/example1-L3.cpp
  276. share/examples/libsbml/c++/layout/example1.cpp
  277. share/examples/libsbml/c++/layout/example2-L3.cpp
  278. share/examples/libsbml/c++/layout/example2.cpp
  279. share/examples/libsbml/c++/layout/example3-L3.cpp
  280. share/examples/libsbml/c++/layout/example3.cpp
  281. share/examples/libsbml/c++/printAnnotation.cpp
  282. share/examples/libsbml/c++/printMath.cpp
  283. share/examples/libsbml/c++/printNotes.cpp
  284. share/examples/libsbml/c++/printRegisteredPackages.cpp
  285. share/examples/libsbml/c++/printSBML.cpp
  286. share/examples/libsbml/c++/printSupported.cpp
  287. share/examples/libsbml/c++/printUnits.cpp
  288. share/examples/libsbml/c++/promoteParameters.cpp
  289. share/examples/libsbml/c++/readSBML.cpp
  290. share/examples/libsbml/c++/renameSId.cpp
  291. share/examples/libsbml/c++/rngvalidator.cpp
  292. share/examples/libsbml/c++/setIdFromNames.cpp
  293. share/examples/libsbml/c++/setNamesFromIds.cpp
  294. share/examples/libsbml/c++/stripPackage.cpp
  295. share/examples/libsbml/c++/translateL3Math.cpp
  296. share/examples/libsbml/c++/translateMath.cpp
  297. share/examples/libsbml/c++/unsetAnnotation.cpp
  298. share/examples/libsbml/c++/unsetNotes.cpp
  299. share/examples/libsbml/c++/util.c
  300. share/examples/libsbml/c++/util.h
  301. share/examples/libsbml/c++/validateSBML.cpp
  302. share/examples/libsbml/csharp/CMakeLists.txt
  303. share/examples/libsbml/csharp/GetAllElementsWithNotes.cs
  304. share/examples/libsbml/csharp/SetIdFromNames.cs
  305. share/examples/libsbml/csharp/addCVTerms.cs
  306. share/examples/libsbml/csharp/addCustomValidator.cs
  307. share/examples/libsbml/csharp/addModelHistory.cs
  308. share/examples/libsbml/csharp/addingEvidenceCodes_1.cs
  309. share/examples/libsbml/csharp/addingEvidenceCodes_2.cs
  310. share/examples/libsbml/csharp/appendAnnotation.cs
  311. share/examples/libsbml/csharp/callExternalValidator.cs
  312. share/examples/libsbml/csharp/convertSBML.cs
  313. share/examples/libsbml/csharp/createExampleSBML.cs
  314. share/examples/libsbml/csharp/echoSBML.cs
  315. share/examples/libsbml/csharp/evaluateCustomMath.cs
  316. share/examples/libsbml/csharp/inlineInitialAssignments.cs
  317. share/examples/libsbml/csharp/layout/CMakeLists.txt
  318. share/examples/libsbml/csharp/layout/example1-L3.cs
  319. share/examples/libsbml/csharp/printAnnotation.cs
  320. share/examples/libsbml/csharp/printMath.cs
  321. share/examples/libsbml/csharp/printNotes.cs
  322. share/examples/libsbml/csharp/printRegisteredPackages.cs
  323. share/examples/libsbml/csharp/printSBML.cs
  324. share/examples/libsbml/csharp/printUnits.cs
  325. share/examples/libsbml/csharp/printsupported.cs
  326. share/examples/libsbml/csharp/promoteParameters.cs
  327. share/examples/libsbml/csharp/readSBML.cs
  328. share/examples/libsbml/csharp/replaceOneFD.cs
  329. share/examples/libsbml/csharp/stripPackage.cs
  330. share/examples/libsbml/csharp/translateMath.cs
  331. share/examples/libsbml/csharp/unsetAnnotation.cs
  332. share/examples/libsbml/csharp/unsetNotes.cs
  333. share/examples/libsbml/csharp/validateSBML.cs
  334. share/examples/libsbml/java/CMakeLists.txt
  335. share/examples/libsbml/java/README.txt
  336. share/examples/libsbml/java/addCVTerms.java
  337. share/examples/libsbml/java/addCustomValidator.java
  338. share/examples/libsbml/java/addModelHistory.java
  339. share/examples/libsbml/java/addingEvidenceCodes_1.java
  340. share/examples/libsbml/java/addingEvidenceCodes_2.java
  341. share/examples/libsbml/java/appendAnnotation.java
  342. share/examples/libsbml/java/callExternalValidator.java
  343. share/examples/libsbml/java/convertSBML.java
  344. share/examples/libsbml/java/createExampleSBML.java
  345. share/examples/libsbml/java/echoSBML.java
  346. share/examples/libsbml/java/evaluateCustomMath.java
  347. share/examples/libsbml/java/evaluateMath.java
  348. share/examples/libsbml/java/getAllElementsWithNotes.java
  349. share/examples/libsbml/java/inlineInitialAssignments.java
  350. share/examples/libsbml/java/layout/CMakeLists.txt
  351. share/examples/libsbml/java/layout/SimpleLayoutConverter.java
  352. share/examples/libsbml/java/layout/layout_example1.java
  353. share/examples/libsbml/java/layout/layout_example1_L3.java
  354. share/examples/libsbml/java/printAnnotation.java
  355. share/examples/libsbml/java/printMath.java
  356. share/examples/libsbml/java/printNotes.java
  357. share/examples/libsbml/java/printRegisteredPackages.java
  358. share/examples/libsbml/java/printSBML.java
  359. share/examples/libsbml/java/printUnits.java
  360. share/examples/libsbml/java/printsupported.java
  361. share/examples/libsbml/java/promoteParameters.java
  362. share/examples/libsbml/java/readSBML.java
  363. share/examples/libsbml/java/replaceOneFD.java
  364. share/examples/libsbml/java/setIdFromNames.java
  365. share/examples/libsbml/java/stripPackage.java
  366. share/examples/libsbml/java/translateMath.java
  367. share/examples/libsbml/java/unsetAnnotation.java
  368. share/examples/libsbml/java/unsetNotes.java
  369. share/examples/libsbml/java/validateSBML.java
  370. share/examples/libsbml/javascript/addCVTerms.js
  371. share/examples/libsbml/javascript/addModelHistory.js
  372. share/examples/libsbml/javascript/addingEvidenceCodes_1.js
  373. share/examples/libsbml/javascript/addingEvidenceCodes_2.js
  374. share/examples/libsbml/javascript/appendAnnotation.js
  375. share/examples/libsbml/javascript/callExternalValidator.js
  376. share/examples/libsbml/javascript/convertSBML.js
  377. share/examples/libsbml/javascript/createExampleSBML.js
  378. share/examples/libsbml/javascript/echoSBML.js
  379. share/examples/libsbml/javascript/printAnnotation.js
  380. share/examples/libsbml/javascript/printMath.js
  381. share/examples/libsbml/javascript/printNotes.js
  382. share/examples/libsbml/javascript/printRegisteredPackages.js
  383. share/examples/libsbml/javascript/printSBML.js
  384. share/examples/libsbml/javascript/printUnits.js
  385. share/examples/libsbml/javascript/printsupported.js
  386. share/examples/libsbml/javascript/promoteParameters.js
  387. share/examples/libsbml/javascript/readSBML.js
  388. share/examples/libsbml/javascript/stripPackage.js
  389. share/examples/libsbml/javascript/translateMath.js
  390. share/examples/libsbml/javascript/unsetAnnotation.js
  391. share/examples/libsbml/javascript/unsetNotes.js
  392. share/examples/libsbml/javascript/validateSBML.js
  393. share/examples/libsbml/layout-package.cmake
  394. share/examples/libsbml/layout/README.txt
  395. share/examples/libsbml/perl/addCVTerms.pl
  396. share/examples/libsbml/perl/addCustomValidator.pl
  397. share/examples/libsbml/perl/addModelHistory.pl
  398. share/examples/libsbml/perl/addingEvidenceCodes_1.pl
  399. share/examples/libsbml/perl/addingEvidenceCodes_2.pl
  400. share/examples/libsbml/perl/appendAnnotation.pl
  401. share/examples/libsbml/perl/callExternalValidator.pl
  402. share/examples/libsbml/perl/convertSBML.pl
  403. share/examples/libsbml/perl/createExampleSBML.pl
  404. share/examples/libsbml/perl/echoSBML.pl
  405. share/examples/libsbml/perl/evaluateMath.pl
  406. share/examples/libsbml/perl/extractReactionInfo.pl
  407. share/examples/libsbml/perl/extractReactions.pl
  408. share/examples/libsbml/perl/layout/example1-L3.pl
  409. share/examples/libsbml/perl/printAnnotation.pl
  410. share/examples/libsbml/perl/printMath.pl
  411. share/examples/libsbml/perl/printNotes.pl
  412. share/examples/libsbml/perl/printRegisteredPackages.pl
  413. share/examples/libsbml/perl/printSBML.pl
  414. share/examples/libsbml/perl/printUnits.pl
  415. share/examples/libsbml/perl/printsupported.pl
  416. share/examples/libsbml/perl/promoteParameters.pl
  417. share/examples/libsbml/perl/readSBML.pl
  418. share/examples/libsbml/perl/stripPackage.pl
  419. share/examples/libsbml/perl/translateMath.pl
  420. share/examples/libsbml/perl/unsetAnnotation.pl
  421. share/examples/libsbml/perl/unsetNotes.pl
  422. share/examples/libsbml/perl/validateSBML.pl
  423. share/examples/libsbml/php/createExampleSBML.php
  424. share/examples/libsbml/php/echoSBML.php
  425. share/examples/libsbml/php/validateSBML.php
  426. share/examples/libsbml/python/addCVTerms.py
  427. share/examples/libsbml/python/addCustomValidator.py
  428. share/examples/libsbml/python/addModelHistory.py
  429. share/examples/libsbml/python/addingEvidenceCodes_1.py
  430. share/examples/libsbml/python/addingEvidenceCodes_2.py
  431. share/examples/libsbml/python/appendAnnotation.py
  432. share/examples/libsbml/python/callExternalValidator.py
  433. share/examples/libsbml/python/convertSBML.py
  434. share/examples/libsbml/python/createExampleSBML.py
  435. share/examples/libsbml/python/createSimpleModel.py
  436. share/examples/libsbml/python/echoSBML.py
  437. share/examples/libsbml/python/evaluateCustomMath.py
  438. share/examples/libsbml/python/getAllElementsWithNotes.py
  439. share/examples/libsbml/python/inlineInitialAssignments.py
  440. share/examples/libsbml/python/layout/convertLayout.py
  441. share/examples/libsbml/python/layout/example1-L3.py
  442. share/examples/libsbml/python/layout/example1.py
  443. share/examples/libsbml/python/printAnnotation.py
  444. share/examples/libsbml/python/printMath.py
  445. share/examples/libsbml/python/printNotes.py
  446. share/examples/libsbml/python/printRegisteredPackages.py
  447. share/examples/libsbml/python/printSBML.py
  448. share/examples/libsbml/python/printUnits.py
  449. share/examples/libsbml/python/printsupported.py
  450. share/examples/libsbml/python/promoteParameters.py
  451. share/examples/libsbml/python/readSBML.py
  452. share/examples/libsbml/python/replaceOneFD.py
  453. share/examples/libsbml/python/setIdFromNames.py
  454. share/examples/libsbml/python/stripPackage.py
  455. share/examples/libsbml/python/translateMath.py
  456. share/examples/libsbml/python/unsetAnnotation.py
  457. share/examples/libsbml/python/unsetNotes.py
  458. share/examples/libsbml/python/validateSBML.py
  459. share/examples/libsbml/r/addCVTerms.R
  460. share/examples/libsbml/r/addModelHistory.R
  461. share/examples/libsbml/r/addingEvidenceCodes_1.R
  462. share/examples/libsbml/r/addingEvidenceCodes_2.R
  463. share/examples/libsbml/r/appendAnnotation.R
  464. share/examples/libsbml/r/convertSBML.R
  465. share/examples/libsbml/r/createExampleSBML.R
  466. share/examples/libsbml/r/echoSBML.R
  467. share/examples/libsbml/r/evaluateMath.R
  468. share/examples/libsbml/r/printAnnotation.R
  469. share/examples/libsbml/r/printMath.R
  470. share/examples/libsbml/r/printNotes.R
  471. share/examples/libsbml/r/printRegisteredPackages.R
  472. share/examples/libsbml/r/printSBML.R
  473. share/examples/libsbml/r/printSupported.R
  474. share/examples/libsbml/r/printUnits.R
  475. share/examples/libsbml/r/promoteParameters.R
  476. share/examples/libsbml/r/readSBML.R
  477. share/examples/libsbml/r/stripPackage.R
  478. share/examples/libsbml/r/translateMath.R
  479. share/examples/libsbml/r/unsetAnnotation.R
  480. share/examples/libsbml/r/unsetNotes.R
  481. share/examples/libsbml/r/validateSBML.R
  482. share/examples/libsbml/ruby/addCVTerms.rb
  483. share/examples/libsbml/ruby/addCustomValidator.rb
  484. share/examples/libsbml/ruby/addModelHistory.rb
  485. share/examples/libsbml/ruby/addingEvidenceCodes_1.rb
  486. share/examples/libsbml/ruby/addingEvidenceCodes_2.rb
  487. share/examples/libsbml/ruby/appendAnnotation.rb
  488. share/examples/libsbml/ruby/callExternalValidator.rb
  489. share/examples/libsbml/ruby/convertSBML.rb
  490. share/examples/libsbml/ruby/createExampleSBML.rb
  491. share/examples/libsbml/ruby/echoSBML.rb
  492. share/examples/libsbml/ruby/layout/example1-L3.rb
  493. share/examples/libsbml/ruby/printAnnotation.rb
  494. share/examples/libsbml/ruby/printMath.rb
  495. share/examples/libsbml/ruby/printNotes.rb
  496. share/examples/libsbml/ruby/printRegisteredPackages.rb
  497. share/examples/libsbml/ruby/printSBML.rb
  498. share/examples/libsbml/ruby/printUnits.rb
  499. share/examples/libsbml/ruby/printsupported.rb
  500. share/examples/libsbml/ruby/promoteParameters.rb
  501. share/examples/libsbml/ruby/readSBML.rb
  502. share/examples/libsbml/ruby/stripPackage.rb
  503. share/examples/libsbml/ruby/translateMath.rb
  504. share/examples/libsbml/ruby/unsetAnnotation.rb
  505. share/examples/libsbml/ruby/unsetNotes.rb
  506. share/examples/libsbml/ruby/validateSBML.rb
  507. share/examples/libsbml/sample-models/README.txt
  508. share/examples/libsbml/sample-models/from-spec/level-2/README.txt
  509. share/examples/libsbml/sample-models/from-spec/level-2/algebraicrules.xml
  510. share/examples/libsbml/sample-models/from-spec/level-2/assignmentrules.xml
  511. share/examples/libsbml/sample-models/from-spec/level-2/boundarycondition.xml
  512. share/examples/libsbml/sample-models/from-spec/level-2/delay.xml
  513. share/examples/libsbml/sample-models/from-spec/level-2/dimerization.xml
  514. share/examples/libsbml/sample-models/from-spec/level-2/enzymekinetics.xml
  515. share/examples/libsbml/sample-models/from-spec/level-2/events.xml
  516. share/examples/libsbml/sample-models/from-spec/level-2/functiondef.xml
  517. share/examples/libsbml/sample-models/from-spec/level-2/multicomp.xml
  518. share/examples/libsbml/sample-models/from-spec/level-2/overdetermined.xml
  519. share/examples/libsbml/sample-models/from-spec/level-2/twodimensional.xml
  520. share/examples/libsbml/sample-models/from-spec/level-2/units.xml
  521. share/examples/libsbml/sample-models/from-spec/level-3/README.txt
  522. share/examples/libsbml/sample-models/from-spec/level-3/algebraicrules.xml
  523. share/examples/libsbml/sample-models/from-spec/level-3/assignmentrules.xml
  524. share/examples/libsbml/sample-models/from-spec/level-3/boundarycondition.xml
  525. share/examples/libsbml/sample-models/from-spec/level-3/conversionfactor1.xml
  526. share/examples/libsbml/sample-models/from-spec/level-3/conversionfactor2.xml
  527. share/examples/libsbml/sample-models/from-spec/level-3/delay.xml
  528. share/examples/libsbml/sample-models/from-spec/level-3/dimerization.xml
  529. share/examples/libsbml/sample-models/from-spec/level-3/enzymekinetics.xml
  530. share/examples/libsbml/sample-models/from-spec/level-3/events.xml
  531. share/examples/libsbml/sample-models/from-spec/level-3/fullydeterminedevent.xml
  532. share/examples/libsbml/sample-models/from-spec/level-3/functiondef.xml
  533. share/examples/libsbml/sample-models/from-spec/level-3/membrane.xml
  534. share/examples/libsbml/sample-models/from-spec/level-3/multicomp.xml
  535. share/examples/libsbml/sample-models/from-spec/level-3/overdetermined.xml
  536. share/examples/libsbml/sample-models/from-spec/level-3/twoalgebraicrules.xml
  537. share/examples/libsbml/sample-models/from-spec/level-3/twodimensional.xml
  538. share/examples/libsbml/xslt/layout/layout2svg.xsl
  539. @postexec /sbin/ldconfig -m /usr/local/lib
  540. @postunexec /sbin/ldconfig -R
  541. Collapse this list.

To install the port: cd /usr/ports/biology/libsbml/ && make install clean
To add the package: pkg install libsbml

PKGNAME: libsbml

distinfo:

TIMESTAMP = 1495154421
SHA256 (libSBML-5.15.0-core-src.tar.gz) = f975bd1fe379cc7027fd3fed9d6ae92e6dd61dda09befdfd2ffb969c324a5c28
SIZE (libSBML-5.15.0-core-src.tar.gz) = 13767144


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
  3. iconv : converters/libiconv
Library dependencies:
  1. libxml2.so : textproc/libxml2
There are no ports dependent upon this port

Configuration Options
===> The following configuration options are available for libsbml-5.15.0:
     EXAMPLES=on: Build and/or install examples
     PYTHON=off: Python bindings or support
     RUBY=off: Ruby bindings or support
===> Use 'make config' to modify these settings

USES:
cmake:outsource iconv:build gnome

Master Sites:
  1. http://cytranet.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  2. http://downloads.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  3. http://excellmedia.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  4. http://freefr.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  5. http://jaist.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  6. http://kent.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  7. http://nchc.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  8. http://netcologne.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  9. http://netix.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  10. http://superb-dca2.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  11. http://superb-sea2.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  12. http://ufpr.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  13. http://vorboss.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  14. https://cytranet.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  15. https://downloads.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  16. https://excellmedia.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  17. https://freefr.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  18. https://jaist.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  19. https://kent.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  20. https://nchc.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  21. https://netcologne.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  22. https://netix.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  23. https://superb-dca2.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  24. https://superb-sea2.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  25. https://ufpr.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/
  26. https://vorboss.dl.sourceforge.net/project/sbml/libsbml/5.15.0/stable/

Number of commits found: 31

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
18 May 2017 02:22:18
Original commit files touched by this commit  5.15.0
Revision:441126
wen search for other commits by this committer
- Update to 5.15.0
02 Nov 2016 22:45:14
Original commit files touched by this commit  5.13.0
Revision:425174
mat search for other commits by this committer
Cleanup no longer needed CHMOD usage after r424898.

PR:		213743
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
16 Apr 2016 01:54:15
Original commit files touched by this commit  5.13.0
Revision:413410
mi search for other commits by this committer
Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:

	https://groups.google.com/forum/#!topic/sbml-discuss/OEq_49c_X78

Notified by:	portscout
01 Apr 2016 13:29:17
Original commit files touched by this commit  5.12.0
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
27 Mar 2016 07:09:34
Original commit files touched by this commit  5.12.0
Revision:411978
wen search for other commits by this committer
- Update to 5.12.0
14 Oct 2015 23:51:20
Original commit files touched by this commit  5.11.4_1
Revision:399316
amdmi3 search for other commits by this committer
- Add LICENSE_FILE
- Switch to options helpers
25 Aug 2015 13:15:17
Original commit files touched by this commit  5.11.4_1
Revision:395248
rakuco search for other commits by this committer
Switch to USES=iconv:build.

The port does not use iconv on its own, the only dependency comes via
libxml2, which has one header that includes iconv.h.
12 May 2015 08:58:14
Original commit files touched by this commit  5.11.4
Revision:386129
wen search for other commits by this committer
- Update to 5.11.4
04 Jan 2015 08:23:24
Original commit files touched by this commit  5.11.0
Revision:376179
mva search for other commits by this committer
- Convert USE_PYTHON -> USES leftovers missed in the previous commits

Spotted by:	antoine
With hat:	python
30 Dec 2014 12:57:54
Original commit files touched by this commit  5.11.0
Revision:375831
wen search for other commits by this committer
- Update to 5.11.0

PR:		196377
Submitted by:	koue@chaosophia.net
20 Oct 2014 07:10:48
Original commit files touched by this commit  5.10.2
Revision:371237
bapt search for other commits by this committer
Cleanup plist
10 Aug 2014 06:21:54
Original commit files touched by this commit  5.10.2
Revision:364504
wen search for other commits by this committer
- Update to 5.10.2

PR:		192198
Submitted by:	tkato432@yahoo.com
09 Aug 2014 15:44:28
Original commit files touched by this commit  5.10.0
Revision:364450
mva search for other commits by this committer
Convert the Python framework bits to USES=python.

Please use USES=python instead of USE_PYTHON.

  USE_PYTHON=yes becomes USES=python
  USE_PYTHON=2.7+ becomes USES=python:2.7+
  USE_PYTHON_BUILD=3.3 becomes USES=python:3.3,build
  ...

A new PYTHON_FEATURES variable was added, which enables certain features for a
port and replaces some knobs at the same time;

  PYTHON_FEATURES=distutils replaces USE_PYDISTUTILS
  PYTHON_FEATURES=autoplist replaces PYDISTUTILS_AUTOPLIST
  PYTHON_FEATURES=py3kplist replaces PYTHON_PY3K_PLIST_HACK
(Only the first 15 lines of the commit message are shown above View all of this commit message)
13 May 2014 07:04:17
Original commit files touched by this commit  5.10.0
Revision:353921
wen search for other commits by this committer
- Update to 5.10.0
13 May 2014 02:46:25
Original commit files touched by this commit  5.9.0
Revision:353913
wen search for other commits by this committer
- Update to 5.9.0 [1]
- Stage support [1]
- Add LICENSE [1]
- Reset maintainer to port@

PR:		188554 [1]
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com> [1]
16 Apr 2014 18:28:50
Original commit files touched by this commit  4.2.0_1
Revision:351411
zeising search for other commits by this committer
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
07 Mar 2014 15:52:40
Original commit files touched by this commit  4.2.0
Revision:347402
bapt search for other commits by this committer
Convert b* to USES=zip
15 Jan 2014 22:50:51
Original commit files touched by this commit  4.2.0
Revision:339844
bapt search for other commits by this committer
Reduce over inclusion of bsd.port.mk
11 Dec 2013 14:43:51
Original commit files touched by this commit  4.2.0
Revision:336171
bapt search for other commits by this committer
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
01 Dec 2013 01:58:32
Original commit files touched by this commit  4.2.0
Revision:335360
wen search for other commits by this committer
- Fix build on head
10 Oct 2013 18:08:34
Original commit files touched by this commit  4.2.0
Revision:330025
tabthorpe search for other commits by this committer
- Switch to build with lang/ruby19
- No PORTREVISION bump, option is off by default

With hat:	portmgr
20 Sep 2013 15:55:44
Original commit files touched by this commit  4.2.0
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
18 Mar 2013 06:50:13
Original commit files touched by this commit  4.2.0
Revision:314530
jgh search for other commits by this committer
- adoption of optionsNG
- trim historical header
- tighten COMMENT

Approved by:	portmgr (miwi)
19 Mar 2011 12:38:54
Original commit files touched by this commit  4.2.0
miwi search for other commits by this committer
- Get Rid MD5 support
08 Oct 2010 02:06:53
Original commit files touched by this commit  4.2.0
wen search for other commits by this committer
- Update to 4.2.0
16 Sep 2010 03:31:29
Original commit files touched by this commit  4.1.0
wen search for other commits by this committer
- Update to 4.1.0
24 May 2010 07:19:35
Original commit files touched by this commit  4.0.1
wen search for other commits by this committer
- Update to 4.0.1
20 Nov 2009 22:53:09
Original commit files touched by this commit  4.0.0
pav search for other commits by this committer
- Mark MAKE_JOBS_UNSAFE

Reported by:    pointyhat
23 Sep 2009 01:06:29
Original commit files touched by this commit  4.0.0
wen search for other commits by this committer
- Update to 4.0.0
- Update my mail address to FreeBSD

PR:             ports/137652
Submitted by:   wenheping@gmail.com(myself)
Approved by:    miwi(mentor)
Feature safe:   yes
22 Aug 2009 00:15:15
Original commit files touched by this commit  3.3.2
amdmi3 search for other commits by this committer
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
28 May 2009 23:36:10
Original commit files touched by this commit  3.3.2
miwi search for other commits by this committer
LibSBML is an open-source programming library to help you read, write,
manipulate, translate, and validate SBML files and data streams. It is
not an application itself (though it does come with example programs),
but rather a library you can embed in your own applications.

LibSBML understands all Levels and Versions of SBML, as well as the
SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in
ISO C and C++ but can be used from all the languages listed in the
right-hand box.

WWW: http://www.sbml.org/

PR:             ports/135022
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 31

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