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Port details
metaeuk Gene discovery and annotation for large-scale eukaryotic metagenomics
7 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 7Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-26 11:18:05
Last Update: 2026-05-07 21:47:29
Commit Hash: 2a7c056
License: GPLv3
WWW:
https://github.com/soedinglab/metaeuk
Description:
MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to recover optimal exons sets. It reduces redundancies in multiple discoveries of the same gene and resolves conflicting gene predictions on the same strand. MetaEuk is GPLv3-licensed open source software that is implemented in C++ and available for Linux and macOS. The software is designed to run efficiently on multiple cores.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/metaeuk
  2. /usr/local/share/licenses/metaeuk-7/catalog.mk
  3. /usr/local/share/licenses/metaeuk-7/LICENSE
  4. /usr/local/share/licenses/metaeuk-7/GPLv3
Collapse this list.
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • metaeuk>0:biology/metaeuk
To install the port:
cd /usr/ports/biology/metaeuk/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/metaeuk
  • pkg install metaeuk
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: metaeuk
Flavors: there is no flavor information for this port.
NOT_FOR_ARCHS: armv6 armv7 i386 powerpc powerpc64
distinfo:
TIMESTAMP = 1717132294 SHA256 (soedinglab-metaeuk-7-bba0d80_GH0.tar.gz) = 45eff3cb8e15626b1142d4717bf43a6e7a1308bc8a6eb1718c70d33d613898fa SIZE (soedinglab-metaeuk-7-bba0d80_GH0.tar.gz) = 13342465

Expand this list (4 items)

Collapse this list.

SHA256 (soedinglab-metaeuk-regression-f7c3999_GH0.tar.gz) = 4724516451e7d9d977c4d2edc04ab86188d5e0326f00fbc6e208df241ac0b1b3 SIZE (soedinglab-metaeuk-regression-f7c3999_GH0.tar.gz) = 6720389 SHA256 (soedinglab-MMseqs2-Regression-5e3bc17_GH0.tar.gz) = 415a7e81821c5add73c8c3b450acbd316d7244d151a306864ff3c260b115b7be SIZE (soedinglab-MMseqs2-Regression-5e3bc17_GH0.tar.gz) = 27715323

Collapse this list.

Packages (timestamps in pop-ups are UTC):
metaeuk
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest77---n/an/an/a
FreeBSD:13:quarterly776_1--n/an/an/a
FreeBSD:14:latest77---6_1-6_1
FreeBSD:14:quarterly77---6_26_26_2
FreeBSD:15:latest77n/a-n/an/a--
FreeBSD:15:quarterly77n/a-n/an/a--
FreeBSD:16:latest77n/a-n/an/a--
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. xxd : editors/vim
  2. cmake : devel/cmake-core
  3. ninja : devel/ninja
  4. perl5>=5.42.r<5.43 : lang/perl5.42
Test dependencies:
  1. bash : shells/bash
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_metaeuk
USES:
cmake perl5 shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/soedinglab/metaeuk/tar.gz/7-bba0d80?dummy=/
Collapse this list.

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
7
07 May 2026 21:47:29
commit hash: 2a7c0561200c6cf9d0c0252cd4a7ab446eca8e4acommit hash: 2a7c0561200c6cf9d0c0252cd4a7ab446eca8e4acommit hash: 2a7c0561200c6cf9d0c0252cd4a7ab446eca8e4acommit hash: 2a7c0561200c6cf9d0c0252cd4a7ab446eca8e4a files touched by this commit		 Rene Ladan (rene) search for other commits by this committer 
all: drop support for FreeBSD 13, mips and risc64sf

Reviewed by:            many (*)
Differential Revision:  https://reviews.freebsd.org/D55624
Differential Revision:  https://reviews.freebsd.org/D55642 (merged in from bofh)

many (*)
  acm arrowd brooks cmt dch decke dinoex eduardo fluffy fuz gahr garga
  jbeich joerg jrm kai kenrap martymac matthew mfechner michaelo mizhka
  nobutaka pkubaj se tagattie thj

  Anton Saietskii
  GenericRikka
  Gert Doering
  Jan Bramkamp
  Oleh Hushchenkov
  Oleksandr Kryvulia
  Ralf van der Enden
  Yamagi

  desktop kde python tcltk office
7
29 Jan 2025 16:56:26
commit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7dcommit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7dcommit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7dcommit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7d files touched by this commit		 Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: builds now fine on powerpc64le
7
01 Jun 2024 08:10:52
commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: update 6 → 7

Reported by:	portscout
6_2
04 Feb 2024 18:27:53
commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Broken on powerpc64le

Reported by:	fallout
6_2
16 Jan 2024 14:35:21
commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495 files touched by this commit		 Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: fix build on powerpc64le by disabling openmp until libomp is
fixed
6_2
12 Jan 2024 04:10:26
commit hash: d4f38349e30f8c7bcf721f440e2895ddc83309dacommit hash: d4f38349e30f8c7bcf721f440e2895ddc83309dacommit hash: d4f38349e30f8c7bcf721f440e2895ddc83309dacommit hash: d4f38349e30f8c7bcf721f440e2895ddc83309da files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Add to NOT_FOR_ARCHS, and correct BROKENxx lines
6_2
12 Jan 2024 04:03:42
commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Correct the reason in the BROKEN_xx line
6_2
12 Jan 2024 03:38:46
commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Not for 32-bit architectures

metaeuk produces wrong results there.
6_2
12 Jan 2024 03:21:22
commit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122ecommit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122ecommit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122ecommit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122e files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Broken on i386, armv7, powerpc64

Reported by:	https://portsfallout.com/
6_2
15 Jul 2023 00:31:14
commit hash: 213c779e49b95baf5968b28af26959119fec5863commit hash: 213c779e49b95baf5968b28af26959119fec5863commit hash: 213c779e49b95baf5968b28af26959119fec5863commit hash: 213c779e49b95baf5968b28af26959119fec5863 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Add NATIVE option
6_1
10 Dec 2022 09:51:02
commit hash: eee818337497110a8f4539b992607c07dc9fd1c6commit hash: eee818337497110a8f4539b992607c07dc9fd1c6commit hash: eee818337497110a8f4539b992607c07dc9fd1c6commit hash: eee818337497110a8f4539b992607c07dc9fd1c6 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Fix build on systems withour OpenMP enabled

Reported by:	fallout
6_1
03 Dec 2022 04:00:49
commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Broken on systems where OpenMP isn't enabled

Reported by:	fallout
6_1
01 Dec 2022 23:07:21
commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60 files touched by this commit		 Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: append missing bracket
01 Dec 2022 22:58:01
commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7 files touched by this commit Sanity Test Failure Refresh 		Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: fix build without libomp and disable -m{arch,cpu}=native
6
26 Nov 2022 11:04:46
commit hash: affc6502d525205e07e5770118a8dc8577bb7d1dcommit hash: affc6502d525205e07e5770118a8dc8577bb7d1dcommit hash: affc6502d525205e07e5770118a8dc8577bb7d1dcommit hash: affc6502d525205e07e5770118a8dc8577bb7d1d files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: New port: Gene discovery and annotation for large-scale
eukaryotic metagenomics

Number of commits found: 15
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