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Port details
p5-Bio-Das Client-side library for Distributed Genome Annotation System
1.17_4 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.17Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2005-09-01 13:10:39
Last Update: 2018-10-06 14:06:45
SVN Revision: 481365
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (56 items)
  1. /usr/local/share/licenses/p5-Bio-Das-1.17_4/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-Das-1.17_4/LICENSE
  3. /usr/local/share/licenses/p5-Bio-Das-1.17_4/ART10
  4. /usr/local/share/licenses/p5-Bio-Das-1.17_4/GPLv1+
  5. lib/perl5/site_perl/Bio/Das.pm
  6. lib/perl5/site_perl/Bio/Das/DSN.pm
  7. lib/perl5/site_perl/Bio/Das/Request.pm
  8. lib/perl5/site_perl/Bio/Das/Stylesheet.pm
  9. lib/perl5/site_perl/Bio/Das/Map.pm
  10. lib/perl5/site_perl/Bio/Das/FeatureIterator.pm
  11. lib/perl5/site_perl/Bio/Das/Segment.pm
  12. lib/perl5/site_perl/Bio/Das/Type.pm
  13. lib/perl5/site_perl/Bio/Das/Feature.pm
  14. lib/perl5/site_perl/Bio/Das/TypeHandler.pm
  15. lib/perl5/site_perl/Bio/Das/Util.pm
  16. lib/perl5/site_perl/Bio/Das/Request/Sequences.pm
  17. lib/perl5/site_perl/Bio/Das/Request/Dnas.pm
  18. lib/perl5/site_perl/Bio/Das/Request/Types.pm
  19. lib/perl5/site_perl/Bio/Das/Request/Feature2Segments.pm
  20. lib/perl5/site_perl/Bio/Das/Request/Features.pm
  21. lib/perl5/site_perl/Bio/Das/Request/Dsn.pm
  22. lib/perl5/site_perl/Bio/Das/Request/Entry_points.pm
  23. lib/perl5/site_perl/Bio/Das/Request/Stylesheet.pm
  24. lib/perl5/site_perl/Bio/Das/AGPServer/SQLStorage.pm
  25. lib/perl5/site_perl/Bio/Das/AGPServer/Proxy.pm
  26. lib/perl5/site_perl/Bio/Das/AGPServer/Parser.pm
  27. lib/perl5/site_perl/Bio/Das/AGPServer/Daemon.pm
  28. lib/perl5/site_perl/Bio/Das/AGPServer/Config.pm
  29. lib/perl5/site_perl/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm
  30. lib/perl5/site_perl/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm
  31. lib/perl5/site_perl/Bio/Das/HTTP/Fetch.pm
  32. lib/perl5/site_perl/man/man3/Bio::Das.3.gz
  33. lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::Config.3.gz
  34. lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::Daemon.3.gz
  35. lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::Parser.3.gz
  36. lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::SQLStorage.3.gz
  37. lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::SQLStorage::CSV::DB.3.gz
  38. lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::SQLStorage::MySQL::DB.3.gz
  39. lib/perl5/site_perl/man/man3/Bio::Das::DSN.3.gz
  40. lib/perl5/site_perl/man/man3/Bio::Das::Feature.3.gz
  41. lib/perl5/site_perl/man/man3/Bio::Das::FeatureIterator.3.gz
  42. lib/perl5/site_perl/man/man3/Bio::Das::HTTP::Fetch.3.gz
  43. lib/perl5/site_perl/man/man3/Bio::Das::Map.3.gz
  44. lib/perl5/site_perl/man/man3/Bio::Das::Request.3.gz
  45. lib/perl5/site_perl/man/man3/Bio::Das::Request::Dnas.3.gz
  46. lib/perl5/site_perl/man/man3/Bio::Das::Request::Dsn.3.gz
  47. lib/perl5/site_perl/man/man3/Bio::Das::Request::Entry_points.3.gz
  48. lib/perl5/site_perl/man/man3/Bio::Das::Request::Feature2Segments.3.gz
  49. lib/perl5/site_perl/man/man3/Bio::Das::Request::Sequences.3.gz
  50. lib/perl5/site_perl/man/man3/Bio::Das::Request::Stylesheet.3.gz
  51. lib/perl5/site_perl/man/man3/Bio::Das::Request::Types.3.gz
  52. lib/perl5/site_perl/man/man3/Bio::Das::Segment.3.gz
  53. lib/perl5/site_perl/man/man3/Bio::Das::Stylesheet.3.gz
  54. lib/perl5/site_perl/man/man3/Bio::Das::Type.3.gz
  55. lib/perl5/site_perl/man/man3/Bio::Das::TypeHandler.3.gz
  56. lib/perl5/site_perl/man/man3/Bio::Das::Util.3.gz
Collapse this list.
Dependency lines:
  • p5-Bio-Das>0:biology/p5-Bio-Das
To install the port: cd /usr/ports/biology/p5-Bio-Das/ && make install clean
To add the package: pkg install p5-Bio-Das
PKGNAME: p5-Bio-Das
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-BioPerl>=0 : biology/p5-BioPerl
  2. p5-HTML-Parser>=3 : www/p5-HTML-Parser
  3. p5-libwww>=5 : www/p5-libwww
  4. perl5>=5.26<5.27 : lang/perl5.26
  5. perl5>=5.26<5.27 : lang/perl5.26
Runtime dependencies:
  1. p5-BioPerl>=0 : biology/p5-BioPerl
  2. p5-HTML-Parser>=3 : www/p5-HTML-Parser
  3. p5-libwww>=5 : www/p5-libwww
  4. perl5>=5.26<5.27 : lang/perl5.26
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/

Number of commits found: 43

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Oct 2018 13:06:45
Original commit files touched by this commit  1.17_4
Revision:481365
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
27 May 2018 20:15:20
Original commit files touched by this commit  1.17_4
Revision:470993
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
15 Sep 2017 08:58:50
Original commit files touched by this commit  1.17_4
Revision:449893
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
18 Dec 2016 15:25:18
Original commit files touched by this commit  1.17_4
Revision:428870
sunpoet search for other commits by this committer
- Add LICENSE
- Add NO_ARCH
- Sort *_DEPENDS
- Bump PORTREVISION for biology/p5-bioperl renaming
01 Apr 2016 13:29:17
Original commit files touched by this commit  1.17_3
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
26 Nov 2014 13:08:38
Original commit files touched by this commit  1.17_3
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.17_2
Revision:371237
bapt search for other commits by this committer
Cleanup plist
05 Jan 2014 12:07:21
Original commit files touched by this commit  1.17_2
Revision:338751
az search for other commits by this committer
- support stage
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.17_2
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
02 Aug 2013 18:52:11
Original commit files touched by this commit  1.17_2
Revision:324174
mat search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
17 Dec 2012 15:39:36
Original commit files touched by this commit  1.17_2
Revision:309105
az search for other commits by this committer
Cleanup supporting perl version 5.8 and 5.10,
lang/perl5.8 and lang/5.10 will be removed from ports tree soon.
10 Jun 2012 18:42:48
Original commit files touched by this commit  1.17_2

swills search for other commits by this committer
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
  RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:             ports/168208
Approved by:    portmgr (miwi)
01 Jun 2012 05:26:28
Original commit files touched by this commit  1.17_2

dinoex search for other commits by this committer
- update png to 1.5.10
13 Mar 2012 16:15:36
Original commit files touched by this commit  1.17_1

pgollucci search for other commits by this committer
- Revert ports/165605 as requested by portmgr@

Note: devel/p5-B-Size and devel/p5-Devel-Arena
where intentionally not restored.

PR:             ports/165605
Approved by:    portmgr (bapt)
Feature safe:   yes (I sure hope so)
08 Mar 2012 18:45:38
Original commit files touched by this commit  1.17_1

pgollucci search for other commits by this committer
- Remove ports that only work with < perl 5.12 (devel/p5-B-Size,
devel/p5-Devel-Arena)
- Remove conditionals for PERL_LEVEL < 501200
- Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk
- Other minor cleanups
  RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS}

PR:             ports/165605
Submitted by:   pgollucci (myself)
Approved by:    portmgr (linimon)
Exp Run by:     linimon
Tested by:      make index
22 Oct 2011 23:50:23
Original commit files touched by this commit  1.17_1

eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.17_1

miwi search for other commits by this committer
- Get Rid MD5 support
21 Sep 2010 07:56:43
Original commit files touched by this commit  1.17_1
  Sanity Test Failure
mm search for other commits by this committer
Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
p5-IO-Compress-Zlib and p5-IO-Compress-Bzip2 modules to p5-IO-Compress.
Explicitly depend on p5-IO-Compress only if PERL_LEVEL < 500903
Bump PORTREVISION
30 Jun 2010 07:36:25
Original commit files touched by this commit  1.17

wen search for other commits by this committer
- Update to 1.17

Feature safe:   yes
24 Jun 2010 00:24:22
Original commit files touched by this commit  1.16

wen search for other commits by this committer
- Update to 1.16

Feature safe:   yes
12 Jun 2010 06:18:36
Original commit files touched by this commit  1.15

wen search for other commits by this committer
- Update to 1.15
28 Mar 2010 06:47:48
Original commit files touched by this commit  1.14_2

dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  1.14_1

dinoex search for other commits by this committer
- update to jpeg-8
08 Sep 2009 12:08:12
Original commit files touched by this commit  1.14

jadawin search for other commits by this committer
- Update to 1.14
27 Aug 2009 20:34:58
Original commit files touched by this commit  1.12

miwi search for other commits by this committer
- Update to 1.12

PR:             138230
Submitted by:   Wen Heping <wenheping@gmail.com>
31 Jul 2009 13:57:52
Original commit files touched by this commit  1.11_1

dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
22 Jul 2009 16:27:08
Original commit files touched by this commit  1.11

pgollucci search for other commits by this committer
- lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks

PR:             ports/135398
Tested by:      2 -exp runs by pav
Approved by:    portmgr (pav)
08 Jun 2009 09:30:07
Original commit files touched by this commit  1.11

jadawin search for other commits by this committer
- Update to 1.11
11 Dec 2008 05:19:13
Original commit files touched by this commit  1.10

leeym search for other commits by this committer
- update to 1.10
31 May 2008 13:46:14
Original commit files touched by this commit  1.09

miwi search for other commits by this committer
- Update to 1.09
23 May 2008 12:22:21
Original commit files touched by this commit  1.08

mat search for other commits by this committer
Update to 1.08
19 May 2008 13:12:08
Original commit files touched by this commit  1.07

araujo search for other commits by this committer
- Include some ports in perl5 category.

PR:             ports/123530
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    flz (portmgr)
17 Apr 2008 14:30:31
Original commit files touched by this commit  1.07

araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
12 Mar 2008 12:24:10
Original commit files touched by this commit  1.07

miwi search for other commits by this committer
- Update to 1.07
07 Sep 2007 14:45:12
Original commit files touched by this commit  1.06

miwi search for other commits by this committer
- Update to 1.06
- Remove 4.X cruft
19 May 2007 20:32:57
Original commit files touched by this commit  1.03_1

flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
14 Mar 2007 08:18:21
Original commit files touched by this commit  1.03

linimon search for other commits by this committer
Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to
email.

Hat:            portmgr
19 Dec 2006 06:47:45
Original commit files touched by this commit  1.03

rafan search for other commits by this committer
- Update to 1.03

PR:             ports/106300
Submitted by:   chinsan
Approved by:    maintainer timeout (15 days)
03 Dec 2006 12:45:59
Original commit files touched by this commit  1.02

demon search for other commits by this committer
Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update.
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.02

edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
05 Jan 2006 22:31:12
Original commit files touched by this commit  1.02

pav search for other commits by this committer
- Remove symlinks that belong to mtree

Approved by:    maintainers
26 Nov 2005 03:40:59
Original commit files touched by this commit  1.02

fenner search for other commits by this committer
Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from
 20 sites instead of just 1.
01 Sep 2005 13:09:33
Original commit files touched by this commit  1.02

garga search for other commits by this committer
Add p5-Bio-Das 1.02, client-side library for Distributed Genome
Annotation System.

PR:             ports/76379
Submitted by:   Razi Khaja <razi@genet.sickkids.on.ca>

Number of commits found: 43

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