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Port details
p5-BioPerl Collection of Perl modules for bioinformatics
1.007002 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 18 Dec 2016 15:27:08
Also Listed In: perl5
License: ART10 GPLv1+
The BioPerl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research.

BioPerl is a collection of object-oriented Perl modules created by the
BioPerl Project. It forms the basis of a large number of bioinformatics and
genomics applications.

(For an interesting aside on "How Perl saved the Human Genome Project", see
http://www.bioperl.org/wiki/How_Perl_saved_human_genome)

WWW: http://bioperl.org/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (1706 items)
  1. /usr/local/share/licenses/p5-BioPerl-1.007002/catalog.mk
  2. /usr/local/share/licenses/p5-BioPerl-1.007002/LICENSE
  3. /usr/local/share/licenses/p5-BioPerl-1.007002/ART10
  4. /usr/local/share/licenses/p5-BioPerl-1.007002/GPLv1+
  5. bin/bp_aacomp.pl
  6. bin/bp_biofetch_genbank_proxy.pl
  7. bin/bp_bioflat_index.pl
  8. bin/bp_biogetseq.pl
  9. bin/bp_blast2tree.pl
  10. bin/bp_bulk_load_gff.pl
  11. bin/bp_chaos_plot.pl
  12. bin/bp_classify_hits_kingdom.pl
  13. bin/bp_composite_LD.pl
  14. bin/bp_das_server.pl
  15. bin/bp_dbsplit.pl
  16. bin/bp_download_query_genbank.pl
  17. bin/bp_extract_feature_seq.pl
  18. bin/bp_fast_load_gff.pl
  19. bin/bp_fastam9_to_table.pl
  20. bin/bp_fetch.pl
  21. bin/bp_filter_search.pl
  22. bin/bp_find-blast-matches.pl
  23. bin/bp_flanks.pl
  24. bin/bp_gccalc.pl
  25. bin/bp_genbank2gff.pl
  26. bin/bp_genbank2gff3.pl
  27. bin/bp_generate_histogram.pl
  28. bin/bp_heterogeneity_test.pl
  29. bin/bp_hivq.pl
  30. bin/bp_hmmer_to_table.pl
  31. bin/bp_index.pl
  32. bin/bp_load_gff.pl
  33. bin/bp_local_taxonomydb_query.pl
  34. bin/bp_make_mrna_protein.pl
  35. bin/bp_mask_by_search.pl
  36. bin/bp_meta_gff.pl
  37. bin/bp_mrtrans.pl
  38. bin/bp_mutate.pl
  39. bin/bp_netinstall.pl
  40. bin/bp_nexus2nh.pl
  41. bin/bp_nrdb.pl
  42. bin/bp_oligo_count.pl
  43. bin/bp_parse_hmmsearch.pl
  44. bin/bp_process_gadfly.pl
  45. bin/bp_process_sgd.pl
  46. bin/bp_process_wormbase.pl
  47. bin/bp_query_entrez_taxa.pl
  48. bin/bp_remote_blast.pl
  49. bin/bp_revtrans-motif.pl
  50. bin/bp_search2alnblocks.pl
  51. bin/bp_search2gff.pl
  52. bin/bp_search2table.pl
  53. bin/bp_search2tribe.pl
  54. bin/bp_seq_length.pl
  55. bin/bp_seqconvert.pl
  56. bin/bp_seqcut.pl
  57. bin/bp_seqfeature_delete.pl
  58. bin/bp_seqfeature_gff3.pl
  59. bin/bp_seqfeature_load.pl
  60. bin/bp_seqpart.pl
  61. bin/bp_seqret.pl
  62. bin/bp_seqretsplit.pl
  63. bin/bp_split_seq.pl
  64. bin/bp_sreformat.pl
  65. bin/bp_taxid4species.pl
  66. bin/bp_taxonomy2tree.pl
  67. bin/bp_translate_seq.pl
  68. bin/bp_tree2pag.pl
  69. bin/bp_unflatten_seq.pl
  70. lib/perl5/site_perl/Bio/Align/AlignI.pm
  71. lib/perl5/site_perl/Bio/Align/DNAStatistics.pm
  72. lib/perl5/site_perl/Bio/Align/Graphics.pm
  73. lib/perl5/site_perl/Bio/Align/PairwiseStatistics.pm
  74. lib/perl5/site_perl/Bio/Align/ProteinStatistics.pm
  75. lib/perl5/site_perl/Bio/Align/StatisticsI.pm
  76. lib/perl5/site_perl/Bio/Align/Utilities.pm
  77. lib/perl5/site_perl/Bio/AlignIO.pm
  78. lib/perl5/site_perl/Bio/AlignIO/Handler/GenericAlignHandler.pm
  79. lib/perl5/site_perl/Bio/AlignIO/arp.pm
  80. lib/perl5/site_perl/Bio/AlignIO/bl2seq.pm
  81. lib/perl5/site_perl/Bio/AlignIO/clustalw.pm
  82. lib/perl5/site_perl/Bio/AlignIO/emboss.pm
  83. lib/perl5/site_perl/Bio/AlignIO/fasta.pm
  84. lib/perl5/site_perl/Bio/AlignIO/largemultifasta.pm
  85. lib/perl5/site_perl/Bio/AlignIO/maf.pm
  86. lib/perl5/site_perl/Bio/AlignIO/mase.pm
  87. lib/perl5/site_perl/Bio/AlignIO/mega.pm
  88. lib/perl5/site_perl/Bio/AlignIO/meme.pm
  89. lib/perl5/site_perl/Bio/AlignIO/metafasta.pm
  90. lib/perl5/site_perl/Bio/AlignIO/msf.pm
  91. lib/perl5/site_perl/Bio/AlignIO/nexml.pm
  92. lib/perl5/site_perl/Bio/AlignIO/nexus.pm
  93. lib/perl5/site_perl/Bio/AlignIO/pfam.pm
  94. lib/perl5/site_perl/Bio/AlignIO/phylip.pm
  95. lib/perl5/site_perl/Bio/AlignIO/po.pm
  96. lib/perl5/site_perl/Bio/AlignIO/proda.pm
  97. lib/perl5/site_perl/Bio/AlignIO/prodom.pm
  98. lib/perl5/site_perl/Bio/AlignIO/psi.pm
  99. lib/perl5/site_perl/Bio/AlignIO/selex.pm
  100. lib/perl5/site_perl/Bio/AlignIO/stockholm.pm
  101. lib/perl5/site_perl/Bio/AlignIO/xmfa.pm
  102. lib/perl5/site_perl/Bio/AnalysisI.pm
  103. lib/perl5/site_perl/Bio/AnalysisParserI.pm
  104. lib/perl5/site_perl/Bio/AnalysisResultI.pm
  105. lib/perl5/site_perl/Bio/AnnotatableI.pm
  106. lib/perl5/site_perl/Bio/Annotation/AnnotationFactory.pm
  107. lib/perl5/site_perl/Bio/Annotation/Collection.pm
  108. lib/perl5/site_perl/Bio/Annotation/Comment.pm
  109. lib/perl5/site_perl/Bio/Annotation/DBLink.pm
  110. lib/perl5/site_perl/Bio/Annotation/OntologyTerm.pm
  111. lib/perl5/site_perl/Bio/Annotation/Reference.pm
  112. lib/perl5/site_perl/Bio/Annotation/Relation.pm
  113. lib/perl5/site_perl/Bio/Annotation/SimpleValue.pm
  114. lib/perl5/site_perl/Bio/Annotation/StructuredValue.pm
  115. lib/perl5/site_perl/Bio/Annotation/TagTree.pm
  116. lib/perl5/site_perl/Bio/Annotation/Target.pm
  117. lib/perl5/site_perl/Bio/Annotation/Tree.pm
  118. lib/perl5/site_perl/Bio/Annotation/TypeManager.pm
  119. lib/perl5/site_perl/Bio/AnnotationCollectionI.pm
  120. lib/perl5/site_perl/Bio/AnnotationI.pm
  121. lib/perl5/site_perl/Bio/Assembly/Contig.pm
  122. lib/perl5/site_perl/Bio/Assembly/ContigAnalysis.pm
  123. lib/perl5/site_perl/Bio/Assembly/IO.pm
  124. lib/perl5/site_perl/Bio/Assembly/IO/ace.pm
  125. lib/perl5/site_perl/Bio/Assembly/IO/bowtie.pm
  126. lib/perl5/site_perl/Bio/Assembly/IO/maq.pm
  127. lib/perl5/site_perl/Bio/Assembly/IO/phrap.pm
  128. lib/perl5/site_perl/Bio/Assembly/IO/sam.pm
  129. lib/perl5/site_perl/Bio/Assembly/IO/tigr.pm
  130. lib/perl5/site_perl/Bio/Assembly/Scaffold.pm
  131. lib/perl5/site_perl/Bio/Assembly/ScaffoldI.pm
  132. lib/perl5/site_perl/Bio/Assembly/Singlet.pm
  133. lib/perl5/site_perl/Bio/Assembly/Tools/ContigSpectrum.pm
  134. lib/perl5/site_perl/Bio/Cluster/ClusterFactory.pm
  135. lib/perl5/site_perl/Bio/Cluster/FamilyI.pm
  136. lib/perl5/site_perl/Bio/Cluster/SequenceFamily.pm
  137. lib/perl5/site_perl/Bio/Cluster/UniGene.pm
  138. lib/perl5/site_perl/Bio/Cluster/UniGeneI.pm
  139. lib/perl5/site_perl/Bio/ClusterI.pm
  140. lib/perl5/site_perl/Bio/ClusterIO.pm
  141. lib/perl5/site_perl/Bio/ClusterIO/dbsnp.pm
  142. lib/perl5/site_perl/Bio/ClusterIO/unigene.pm
  143. lib/perl5/site_perl/Bio/CodonUsage/IO.pm
  144. lib/perl5/site_perl/Bio/CodonUsage/Table.pm
  145. lib/perl5/site_perl/Bio/DB/Ace.pm
  146. lib/perl5/site_perl/Bio/DB/BioFetch.pm
  147. lib/perl5/site_perl/Bio/DB/CUTG.pm
  148. lib/perl5/site_perl/Bio/DB/DBFetch.pm
  149. lib/perl5/site_perl/Bio/DB/EMBL.pm
  150. lib/perl5/site_perl/Bio/DB/EntrezGene.pm
  151. lib/perl5/site_perl/Bio/DB/Expression.pm
  152. lib/perl5/site_perl/Bio/DB/Expression/geo.pm
  153. lib/perl5/site_perl/Bio/DB/Failover.pm
  154. lib/perl5/site_perl/Bio/DB/Fasta.pm
  155. lib/perl5/site_perl/Bio/DB/FileCache.pm
  156. lib/perl5/site_perl/Bio/DB/Flat.pm
  157. lib/perl5/site_perl/Bio/DB/Flat/BDB.pm
  158. lib/perl5/site_perl/Bio/DB/Flat/BDB/embl.pm
  159. lib/perl5/site_perl/Bio/DB/Flat/BDB/fasta.pm
  160. lib/perl5/site_perl/Bio/DB/Flat/BDB/genbank.pm
  161. lib/perl5/site_perl/Bio/DB/Flat/BDB/swiss.pm
  162. lib/perl5/site_perl/Bio/DB/Flat/BinarySearch.pm
  163. lib/perl5/site_perl/Bio/DB/GFF.pm
  164. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/ace.pm
  165. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/berkeleydb.pm
  166. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
  167. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/biofetch.pm
  168. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/biofetch_oracle.pm
  169. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi.pm
  170. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
  171. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/iterator.pm
  172. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/mysql.pm
  173. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/mysqlace.pm
  174. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
  175. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
  176. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/oracle.pm
  177. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/oracleace.pm
  178. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/pg.pm
  179. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
  180. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/memory.pm
  181. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
  182. lib/perl5/site_perl/Bio/DB/GFF/Adaptor/memory/iterator.pm
  183. lib/perl5/site_perl/Bio/DB/GFF/Aggregator.pm
  184. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/alignment.pm
  185. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/clone.pm
  186. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/coding.pm
  187. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/gene.pm
  188. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/match.pm
  189. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/none.pm
  190. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/orf.pm
  191. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/processed_transcript.pm
  192. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/so_transcript.pm
  193. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/transcript.pm
  194. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_acembly.pm
  195. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
  196. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_genscan.pm
  197. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_refgene.pm
  198. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
  199. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
  200. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_softberry.pm
  201. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
  202. lib/perl5/site_perl/Bio/DB/GFF/Aggregator/ucsc_unigene.pm
  203. lib/perl5/site_perl/Bio/DB/GFF/Featname.pm
  204. lib/perl5/site_perl/Bio/DB/GFF/Feature.pm
  205. lib/perl5/site_perl/Bio/DB/GFF/Homol.pm
  206. lib/perl5/site_perl/Bio/DB/GFF/RelSegment.pm
  207. lib/perl5/site_perl/Bio/DB/GFF/Segment.pm
  208. lib/perl5/site_perl/Bio/DB/GFF/Typename.pm
  209. lib/perl5/site_perl/Bio/DB/GFF/Util/Binning.pm
  210. lib/perl5/site_perl/Bio/DB/GFF/Util/Rearrange.pm
  211. lib/perl5/site_perl/Bio/DB/GenBank.pm
  212. lib/perl5/site_perl/Bio/DB/GenPept.pm
  213. lib/perl5/site_perl/Bio/DB/GenericWebAgent.pm
  214. lib/perl5/site_perl/Bio/DB/HIV.pm
  215. lib/perl5/site_perl/Bio/DB/HIV/HIVAnnotProcessor.pm
  216. lib/perl5/site_perl/Bio/DB/HIV/HIVQueryHelper.pm
  217. lib/perl5/site_perl/Bio/DB/HIV/lanl-schema.xml
  218. lib/perl5/site_perl/Bio/DB/InMemoryCache.pm
  219. lib/perl5/site_perl/Bio/DB/IndexedBase.pm
  220. lib/perl5/site_perl/Bio/DB/LocationI.pm
  221. lib/perl5/site_perl/Bio/DB/MeSH.pm
  222. lib/perl5/site_perl/Bio/DB/NCBIHelper.pm
  223. lib/perl5/site_perl/Bio/DB/Qual.pm
  224. lib/perl5/site_perl/Bio/DB/Query/GenBank.pm
  225. lib/perl5/site_perl/Bio/DB/Query/HIVQuery.pm
  226. lib/perl5/site_perl/Bio/DB/Query/WebQuery.pm
  227. lib/perl5/site_perl/Bio/DB/QueryI.pm
  228. lib/perl5/site_perl/Bio/DB/RandomAccessI.pm
  229. lib/perl5/site_perl/Bio/DB/RefSeq.pm
  230. lib/perl5/site_perl/Bio/DB/ReferenceI.pm
  231. lib/perl5/site_perl/Bio/DB/Registry.pm
  232. lib/perl5/site_perl/Bio/DB/SeqFeature.pm
  233. lib/perl5/site_perl/Bio/DB/SeqFeature/NormalizedFeature.pm
  234. lib/perl5/site_perl/Bio/DB/SeqFeature/NormalizedFeatureI.pm
  235. lib/perl5/site_perl/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
  236. lib/perl5/site_perl/Bio/DB/SeqFeature/Segment.pm
  237. lib/perl5/site_perl/Bio/DB/SeqFeature/Store.pm
  238. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/DBI/Iterator.pm
  239. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/DBI/Pg.pm
  240. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/DBI/SQLite.pm
  241. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/DBI/mysql.pm
  242. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
  243. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/GFF2Loader.pm
  244. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/GFF3Loader.pm
  245. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/LoadHelper.pm
  246. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/Loader.pm
  247. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/bdb.pm
  248. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/berkeleydb.pm
  249. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/berkeleydb3.pm
  250. lib/perl5/site_perl/Bio/DB/SeqFeature/Store/memory.pm
  251. lib/perl5/site_perl/Bio/DB/SeqI.pm
  252. lib/perl5/site_perl/Bio/DB/SeqVersion.pm
  253. lib/perl5/site_perl/Bio/DB/SeqVersion/gi.pm
  254. lib/perl5/site_perl/Bio/DB/SwissProt.pm
  255. lib/perl5/site_perl/Bio/DB/TFBS.pm
  256. lib/perl5/site_perl/Bio/DB/TFBS/transfac_pro.pm
  257. lib/perl5/site_perl/Bio/DB/Taxonomy.pm
  258. lib/perl5/site_perl/Bio/DB/Taxonomy/entrez.pm
  259. lib/perl5/site_perl/Bio/DB/Taxonomy/flatfile.pm
  260. lib/perl5/site_perl/Bio/DB/Taxonomy/greengenes.pm
  261. lib/perl5/site_perl/Bio/DB/Taxonomy/list.pm
  262. lib/perl5/site_perl/Bio/DB/Taxonomy/silva.pm
  263. lib/perl5/site_perl/Bio/DB/Taxonomy/sqlite.pm
  264. lib/perl5/site_perl/Bio/DB/Universal.pm
  265. lib/perl5/site_perl/Bio/DB/UpdateableSeqI.pm
  266. lib/perl5/site_perl/Bio/DB/WebDBSeqI.pm
  267. lib/perl5/site_perl/Bio/DBLinkContainerI.pm
  268. lib/perl5/site_perl/Bio/Das/FeatureTypeI.pm
  269. lib/perl5/site_perl/Bio/Das/SegmentI.pm
  270. lib/perl5/site_perl/Bio/DasI.pm
  271. lib/perl5/site_perl/Bio/DescribableI.pm
  272. lib/perl5/site_perl/Bio/Draw/Pictogram.pm
  273. lib/perl5/site_perl/Bio/Event/EventGeneratorI.pm
  274. lib/perl5/site_perl/Bio/Event/EventHandlerI.pm
  275. lib/perl5/site_perl/Bio/Factory/AnalysisI.pm
  276. lib/perl5/site_perl/Bio/Factory/ApplicationFactoryI.pm
  277. lib/perl5/site_perl/Bio/Factory/DriverFactory.pm
  278. lib/perl5/site_perl/Bio/Factory/FTLocationFactory.pm
  279. lib/perl5/site_perl/Bio/Factory/LocationFactoryI.pm
  280. lib/perl5/site_perl/Bio/Factory/MapFactoryI.pm
  281. lib/perl5/site_perl/Bio/Factory/ObjectBuilderI.pm
  282. lib/perl5/site_perl/Bio/Factory/ObjectFactory.pm
  283. lib/perl5/site_perl/Bio/Factory/ObjectFactoryI.pm
  284. lib/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactory.pm
  285. lib/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactoryI.pm
  286. lib/perl5/site_perl/Bio/Factory/SequenceFactoryI.pm
  287. lib/perl5/site_perl/Bio/Factory/SequenceProcessorI.pm
  288. lib/perl5/site_perl/Bio/Factory/SequenceStreamI.pm
  289. lib/perl5/site_perl/Bio/Factory/TreeFactoryI.pm
  290. lib/perl5/site_perl/Bio/FeatureHolderI.pm
  291. lib/perl5/site_perl/Bio/HandlerBaseI.pm
  292. lib/perl5/site_perl/Bio/IdCollectionI.pm
  293. lib/perl5/site_perl/Bio/IdentifiableI.pm
  294. lib/perl5/site_perl/Bio/Index/Abstract.pm
  295. lib/perl5/site_perl/Bio/Index/AbstractSeq.pm
  296. lib/perl5/site_perl/Bio/Index/Blast.pm
  297. lib/perl5/site_perl/Bio/Index/BlastTable.pm
  298. lib/perl5/site_perl/Bio/Index/EMBL.pm
  299. lib/perl5/site_perl/Bio/Index/Fasta.pm
  300. lib/perl5/site_perl/Bio/Index/Fastq.pm
  301. lib/perl5/site_perl/Bio/Index/GenBank.pm
  302. lib/perl5/site_perl/Bio/Index/Hmmer.pm
  303. lib/perl5/site_perl/Bio/Index/Qual.pm
  304. lib/perl5/site_perl/Bio/Index/Stockholm.pm
  305. lib/perl5/site_perl/Bio/Index/SwissPfam.pm
  306. lib/perl5/site_perl/Bio/Index/Swissprot.pm
  307. lib/perl5/site_perl/Bio/LiveSeq/AARange.pm
  308. lib/perl5/site_perl/Bio/LiveSeq/Chain.pm
  309. lib/perl5/site_perl/Bio/LiveSeq/ChainI.pm
  310. lib/perl5/site_perl/Bio/LiveSeq/DNA.pm
  311. lib/perl5/site_perl/Bio/LiveSeq/Exon.pm
  312. lib/perl5/site_perl/Bio/LiveSeq/Gene.pm
  313. lib/perl5/site_perl/Bio/LiveSeq/IO/BioPerl.pm
  314. lib/perl5/site_perl/Bio/LiveSeq/IO/Loader.pm
  315. lib/perl5/site_perl/Bio/LiveSeq/Intron.pm
  316. lib/perl5/site_perl/Bio/LiveSeq/Mutation.pm
  317. lib/perl5/site_perl/Bio/LiveSeq/Mutator.pm
  318. lib/perl5/site_perl/Bio/LiveSeq/Prim_Transcript.pm
  319. lib/perl5/site_perl/Bio/LiveSeq/Range.pm
  320. lib/perl5/site_perl/Bio/LiveSeq/Repeat_Region.pm
  321. lib/perl5/site_perl/Bio/LiveSeq/Repeat_Unit.pm
  322. lib/perl5/site_perl/Bio/LiveSeq/SeqI.pm
  323. lib/perl5/site_perl/Bio/LiveSeq/Transcript.pm
  324. lib/perl5/site_perl/Bio/LiveSeq/Translation.pm
  325. lib/perl5/site_perl/Bio/LocatableSeq.pm
  326. lib/perl5/site_perl/Bio/Location/Atomic.pm
  327. lib/perl5/site_perl/Bio/Location/AvWithinCoordPolicy.pm
  328. lib/perl5/site_perl/Bio/Location/CoordinatePolicyI.pm
  329. lib/perl5/site_perl/Bio/Location/Fuzzy.pm
  330. lib/perl5/site_perl/Bio/Location/FuzzyLocationI.pm
  331. lib/perl5/site_perl/Bio/Location/NarrowestCoordPolicy.pm
  332. lib/perl5/site_perl/Bio/Location/Simple.pm
  333. lib/perl5/site_perl/Bio/Location/Split.pm
  334. lib/perl5/site_perl/Bio/Location/SplitLocationI.pm
  335. lib/perl5/site_perl/Bio/Location/WidestCoordPolicy.pm
  336. lib/perl5/site_perl/Bio/LocationI.pm
  337. lib/perl5/site_perl/Bio/Map/Clone.pm
  338. lib/perl5/site_perl/Bio/Map/Contig.pm
  339. lib/perl5/site_perl/Bio/Map/CytoMap.pm
  340. lib/perl5/site_perl/Bio/Map/CytoMarker.pm
  341. lib/perl5/site_perl/Bio/Map/CytoPosition.pm
  342. lib/perl5/site_perl/Bio/Map/EntityI.pm
  343. lib/perl5/site_perl/Bio/Map/FPCMarker.pm
  344. lib/perl5/site_perl/Bio/Map/Gene.pm
  345. lib/perl5/site_perl/Bio/Map/GeneMap.pm
  346. lib/perl5/site_perl/Bio/Map/GenePosition.pm
  347. lib/perl5/site_perl/Bio/Map/GeneRelative.pm
  348. lib/perl5/site_perl/Bio/Map/LinkageMap.pm
  349. lib/perl5/site_perl/Bio/Map/LinkagePosition.pm
  350. lib/perl5/site_perl/Bio/Map/MapI.pm
  351. lib/perl5/site_perl/Bio/Map/Mappable.pm
  352. lib/perl5/site_perl/Bio/Map/MappableI.pm
  353. lib/perl5/site_perl/Bio/Map/Marker.pm
  354. lib/perl5/site_perl/Bio/Map/MarkerI.pm
  355. lib/perl5/site_perl/Bio/Map/Microsatellite.pm
  356. lib/perl5/site_perl/Bio/Map/OrderedPosition.pm
  357. lib/perl5/site_perl/Bio/Map/OrderedPositionWithDistance.pm
  358. lib/perl5/site_perl/Bio/Map/Physical.pm
  359. lib/perl5/site_perl/Bio/Map/Position.pm
  360. lib/perl5/site_perl/Bio/Map/PositionHandler.pm
  361. lib/perl5/site_perl/Bio/Map/PositionHandlerI.pm
  362. lib/perl5/site_perl/Bio/Map/PositionI.pm
  363. lib/perl5/site_perl/Bio/Map/PositionWithSequence.pm
  364. lib/perl5/site_perl/Bio/Map/Prediction.pm
  365. lib/perl5/site_perl/Bio/Map/Relative.pm
  366. lib/perl5/site_perl/Bio/Map/RelativeI.pm
  367. lib/perl5/site_perl/Bio/Map/SimpleMap.pm
  368. lib/perl5/site_perl/Bio/Map/TranscriptionFactor.pm
  369. lib/perl5/site_perl/Bio/MapIO.pm
  370. lib/perl5/site_perl/Bio/MapIO/fpc.pm
  371. lib/perl5/site_perl/Bio/MapIO/mapmaker.pm
  372. lib/perl5/site_perl/Bio/Matrix/Generic.pm
  373. lib/perl5/site_perl/Bio/Matrix/IO.pm
  374. lib/perl5/site_perl/Bio/Matrix/IO/mlagan.pm
  375. lib/perl5/site_perl/Bio/Matrix/IO/phylip.pm
  376. lib/perl5/site_perl/Bio/Matrix/IO/scoring.pm
  377. lib/perl5/site_perl/Bio/Matrix/MatrixI.pm
  378. lib/perl5/site_perl/Bio/Matrix/Mlagan.pm
  379. lib/perl5/site_perl/Bio/Matrix/PSM/IO.pm
  380. lib/perl5/site_perl/Bio/Matrix/PSM/IO/mast.pm
  381. lib/perl5/site_perl/Bio/Matrix/PSM/IO/masta.pm
  382. lib/perl5/site_perl/Bio/Matrix/PSM/IO/meme.pm
  383. lib/perl5/site_perl/Bio/Matrix/PSM/IO/psiblast.pm
  384. lib/perl5/site_perl/Bio/Matrix/PSM/IO/transfac.pm
  385. lib/perl5/site_perl/Bio/Matrix/PSM/InstanceSite.pm
  386. lib/perl5/site_perl/Bio/Matrix/PSM/InstanceSiteI.pm
  387. lib/perl5/site_perl/Bio/Matrix/PSM/ProtMatrix.pm
  388. lib/perl5/site_perl/Bio/Matrix/PSM/ProtPsm.pm
  389. lib/perl5/site_perl/Bio/Matrix/PSM/Psm.pm
  390. lib/perl5/site_perl/Bio/Matrix/PSM/PsmHeader.pm
  391. lib/perl5/site_perl/Bio/Matrix/PSM/PsmHeaderI.pm
  392. lib/perl5/site_perl/Bio/Matrix/PSM/PsmI.pm
  393. lib/perl5/site_perl/Bio/Matrix/PSM/SiteMatrix.pm
  394. lib/perl5/site_perl/Bio/Matrix/PSM/SiteMatrixI.pm
  395. lib/perl5/site_perl/Bio/Matrix/PhylipDist.pm
  396. lib/perl5/site_perl/Bio/Matrix/Scoring.pm
  397. lib/perl5/site_perl/Bio/MolEvol/CodonModel.pm
  398. lib/perl5/site_perl/Bio/Nexml/Factory.pm
  399. lib/perl5/site_perl/Bio/NexmlIO.pm
  400. lib/perl5/site_perl/Bio/Ontology/DocumentRegistry.pm
  401. lib/perl5/site_perl/Bio/Ontology/GOterm.pm
  402. lib/perl5/site_perl/Bio/Ontology/InterProTerm.pm
  403. lib/perl5/site_perl/Bio/Ontology/OBOEngine.pm
  404. lib/perl5/site_perl/Bio/Ontology/OBOterm.pm
  405. lib/perl5/site_perl/Bio/Ontology/Ontology.pm
  406. lib/perl5/site_perl/Bio/Ontology/OntologyEngineI.pm
  407. lib/perl5/site_perl/Bio/Ontology/OntologyI.pm
  408. lib/perl5/site_perl/Bio/Ontology/OntologyStore.pm
  409. lib/perl5/site_perl/Bio/Ontology/Path.pm
  410. lib/perl5/site_perl/Bio/Ontology/PathI.pm
  411. lib/perl5/site_perl/Bio/Ontology/Relationship.pm
  412. lib/perl5/site_perl/Bio/Ontology/RelationshipFactory.pm
  413. lib/perl5/site_perl/Bio/Ontology/RelationshipI.pm
  414. lib/perl5/site_perl/Bio/Ontology/RelationshipType.pm
  415. lib/perl5/site_perl/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
  416. lib/perl5/site_perl/Bio/Ontology/SimpleOntologyEngine.pm
  417. lib/perl5/site_perl/Bio/Ontology/Term.pm
  418. lib/perl5/site_perl/Bio/Ontology/TermFactory.pm
  419. lib/perl5/site_perl/Bio/Ontology/TermI.pm
  420. lib/perl5/site_perl/Bio/OntologyIO.pm
  421. lib/perl5/site_perl/Bio/OntologyIO/Handlers/BaseSAXHandler.pm
  422. lib/perl5/site_perl/Bio/OntologyIO/Handlers/InterProHandler.pm
  423. lib/perl5/site_perl/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
  424. lib/perl5/site_perl/Bio/OntologyIO/InterProParser.pm
  425. lib/perl5/site_perl/Bio/OntologyIO/dagflat.pm
  426. lib/perl5/site_perl/Bio/OntologyIO/goflat.pm
  427. lib/perl5/site_perl/Bio/OntologyIO/obo.pm
  428. lib/perl5/site_perl/Bio/OntologyIO/simplehierarchy.pm
  429. lib/perl5/site_perl/Bio/OntologyIO/soflat.pm
  430. lib/perl5/site_perl/Bio/ParameterBaseI.pm
  431. lib/perl5/site_perl/Bio/Perl.pm
  432. lib/perl5/site_perl/Bio/Phenotype/Correlate.pm
  433. lib/perl5/site_perl/Bio/Phenotype/MeSH/Term.pm
  434. lib/perl5/site_perl/Bio/Phenotype/MeSH/Twig.pm
  435. lib/perl5/site_perl/Bio/Phenotype/Measure.pm
  436. lib/perl5/site_perl/Bio/Phenotype/OMIM/MiniMIMentry.pm
  437. lib/perl5/site_perl/Bio/Phenotype/OMIM/OMIMentry.pm
  438. lib/perl5/site_perl/Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm
  439. lib/perl5/site_perl/Bio/Phenotype/OMIM/OMIMparser.pm
  440. lib/perl5/site_perl/Bio/Phenotype/Phenotype.pm
  441. lib/perl5/site_perl/Bio/Phenotype/PhenotypeI.pm
  442. lib/perl5/site_perl/Bio/PhyloNetwork.pm
  443. lib/perl5/site_perl/Bio/PhyloNetwork/Factory.pm
  444. lib/perl5/site_perl/Bio/PhyloNetwork/FactoryX.pm
  445. lib/perl5/site_perl/Bio/PhyloNetwork/GraphViz.pm
  446. lib/perl5/site_perl/Bio/PhyloNetwork/RandomFactory.pm
  447. lib/perl5/site_perl/Bio/PhyloNetwork/TreeFactory.pm
  448. lib/perl5/site_perl/Bio/PhyloNetwork/TreeFactoryMulti.pm
  449. lib/perl5/site_perl/Bio/PhyloNetwork/TreeFactoryX.pm
  450. lib/perl5/site_perl/Bio/PhyloNetwork/muVector.pm
  451. lib/perl5/site_perl/Bio/PopGen/Genotype.pm
  452. lib/perl5/site_perl/Bio/PopGen/GenotypeI.pm
  453. lib/perl5/site_perl/Bio/PopGen/HtSNP.pm
  454. lib/perl5/site_perl/Bio/PopGen/IO.pm
  455. lib/perl5/site_perl/Bio/PopGen/IO/csv.pm
  456. lib/perl5/site_perl/Bio/PopGen/IO/hapmap.pm
  457. lib/perl5/site_perl/Bio/PopGen/IO/phase.pm
  458. lib/perl5/site_perl/Bio/PopGen/IO/prettybase.pm
  459. lib/perl5/site_perl/Bio/PopGen/Individual.pm
  460. lib/perl5/site_perl/Bio/PopGen/IndividualI.pm
  461. lib/perl5/site_perl/Bio/PopGen/Marker.pm
  462. lib/perl5/site_perl/Bio/PopGen/MarkerI.pm
  463. lib/perl5/site_perl/Bio/PopGen/PopStats.pm
  464. lib/perl5/site_perl/Bio/PopGen/Population.pm
  465. lib/perl5/site_perl/Bio/PopGen/PopulationI.pm
  466. lib/perl5/site_perl/Bio/PopGen/Simulation/Coalescent.pm
  467. lib/perl5/site_perl/Bio/PopGen/Simulation/GeneticDrift.pm
  468. lib/perl5/site_perl/Bio/PopGen/Statistics.pm
  469. lib/perl5/site_perl/Bio/PopGen/TagHaplotype.pm
  470. lib/perl5/site_perl/Bio/PopGen/Utilities.pm
  471. lib/perl5/site_perl/Bio/PrimarySeq.pm
  472. lib/perl5/site_perl/Bio/PrimarySeqI.pm
  473. lib/perl5/site_perl/Bio/PullParserI.pm
  474. lib/perl5/site_perl/Bio/Range.pm
  475. lib/perl5/site_perl/Bio/RangeI.pm
  476. lib/perl5/site_perl/Bio/Restriction/Analysis.pm
  477. lib/perl5/site_perl/Bio/Restriction/Enzyme.pm
  478. lib/perl5/site_perl/Bio/Restriction/Enzyme/MultiCut.pm
  479. lib/perl5/site_perl/Bio/Restriction/Enzyme/MultiSite.pm
  480. lib/perl5/site_perl/Bio/Restriction/EnzymeCollection.pm
  481. lib/perl5/site_perl/Bio/Restriction/EnzymeI.pm
  482. lib/perl5/site_perl/Bio/Restriction/IO.pm
  483. lib/perl5/site_perl/Bio/Restriction/IO/bairoch.pm
  484. lib/perl5/site_perl/Bio/Restriction/IO/base.pm
  485. lib/perl5/site_perl/Bio/Restriction/IO/itype2.pm
  486. lib/perl5/site_perl/Bio/Restriction/IO/prototype.pm
  487. lib/perl5/site_perl/Bio/Restriction/IO/withrefm.pm
  488. lib/perl5/site_perl/Bio/Root/Build.pm
  489. lib/perl5/site_perl/Bio/Root/Exception.pm
  490. lib/perl5/site_perl/Bio/Root/HTTPget.pm
  491. lib/perl5/site_perl/Bio/Root/IO.pm
  492. lib/perl5/site_perl/Bio/Root/Root.pm
  493. lib/perl5/site_perl/Bio/Root/RootI.pm
  494. lib/perl5/site_perl/Bio/Root/Storable.pm
  495. lib/perl5/site_perl/Bio/Root/Test.pm
  496. lib/perl5/site_perl/Bio/Root/TestObject.pm
  497. lib/perl5/site_perl/Bio/Root/Utilities.pm
  498. lib/perl5/site_perl/Bio/Root/Version.pm
  499. lib/perl5/site_perl/Bio/Search/BlastStatistics.pm
  500. lib/perl5/site_perl/Bio/Search/BlastUtils.pm
  501. lib/perl5/site_perl/Bio/Search/DatabaseI.pm
  502. lib/perl5/site_perl/Bio/Search/GenericDatabase.pm
  503. lib/perl5/site_perl/Bio/Search/GenericStatistics.pm
  504. lib/perl5/site_perl/Bio/Search/HSP/BlastHSP.pm
  505. lib/perl5/site_perl/Bio/Search/HSP/BlastPullHSP.pm
  506. lib/perl5/site_perl/Bio/Search/HSP/FastaHSP.pm
  507. lib/perl5/site_perl/Bio/Search/HSP/GenericHSP.pm
  508. lib/perl5/site_perl/Bio/Search/HSP/HMMERHSP.pm
  509. lib/perl5/site_perl/Bio/Search/HSP/HSPFactory.pm
  510. lib/perl5/site_perl/Bio/Search/HSP/HSPI.pm
  511. lib/perl5/site_perl/Bio/Search/HSP/HmmpfamHSP.pm
  512. lib/perl5/site_perl/Bio/Search/HSP/ModelHSP.pm
  513. lib/perl5/site_perl/Bio/Search/HSP/PSLHSP.pm
  514. lib/perl5/site_perl/Bio/Search/HSP/PsiBlastHSP.pm
  515. lib/perl5/site_perl/Bio/Search/HSP/PullHSPI.pm
  516. lib/perl5/site_perl/Bio/Search/HSP/WABAHSP.pm
  517. lib/perl5/site_perl/Bio/Search/Hit/BlastHit.pm
  518. lib/perl5/site_perl/Bio/Search/Hit/BlastPullHit.pm
  519. lib/perl5/site_perl/Bio/Search/Hit/Fasta.pm
  520. lib/perl5/site_perl/Bio/Search/Hit/GenericHit.pm
  521. lib/perl5/site_perl/Bio/Search/Hit/HMMERHit.pm
  522. lib/perl5/site_perl/Bio/Search/Hit/HitFactory.pm
  523. lib/perl5/site_perl/Bio/Search/Hit/HitI.pm
  524. lib/perl5/site_perl/Bio/Search/Hit/HmmpfamHit.pm
  525. lib/perl5/site_perl/Bio/Search/Hit/ModelHit.pm
  526. lib/perl5/site_perl/Bio/Search/Hit/PsiBlastHit.pm
  527. lib/perl5/site_perl/Bio/Search/Hit/PullHitI.pm
  528. lib/perl5/site_perl/Bio/Search/Hit/hmmer3Hit.pm
  529. lib/perl5/site_perl/Bio/Search/Iteration/GenericIteration.pm
  530. lib/perl5/site_perl/Bio/Search/Iteration/IterationI.pm
  531. lib/perl5/site_perl/Bio/Search/Processor.pm
  532. lib/perl5/site_perl/Bio/Search/Result/BlastPullResult.pm
  533. lib/perl5/site_perl/Bio/Search/Result/BlastResult.pm
  534. lib/perl5/site_perl/Bio/Search/Result/CrossMatchResult.pm
  535. lib/perl5/site_perl/Bio/Search/Result/GenericResult.pm
  536. lib/perl5/site_perl/Bio/Search/Result/HMMERResult.pm
  537. lib/perl5/site_perl/Bio/Search/Result/HmmpfamResult.pm
  538. lib/perl5/site_perl/Bio/Search/Result/INFERNALResult.pm
  539. lib/perl5/site_perl/Bio/Search/Result/PullResultI.pm
  540. lib/perl5/site_perl/Bio/Search/Result/ResultFactory.pm
  541. lib/perl5/site_perl/Bio/Search/Result/ResultI.pm
  542. lib/perl5/site_perl/Bio/Search/Result/WABAResult.pm
  543. lib/perl5/site_perl/Bio/Search/Result/hmmer3Result.pm
  544. lib/perl5/site_perl/Bio/Search/SearchUtils.pm
  545. lib/perl5/site_perl/Bio/Search/StatisticsI.pm
  546. lib/perl5/site_perl/Bio/Search/Tiling/MapTileUtils.pm
  547. lib/perl5/site_perl/Bio/Search/Tiling/MapTiling.pm
  548. lib/perl5/site_perl/Bio/Search/Tiling/TilingI.pm
  549. lib/perl5/site_perl/Bio/SearchDist.pm
  550. lib/perl5/site_perl/Bio/SearchIO.pm
  551. lib/perl5/site_perl/Bio/SearchIO/EventHandlerI.pm
  552. lib/perl5/site_perl/Bio/SearchIO/FastHitEventBuilder.pm
  553. lib/perl5/site_perl/Bio/SearchIO/IteratedSearchResultEventBuilder.pm
  554. lib/perl5/site_perl/Bio/SearchIO/SearchResultEventBuilder.pm
  555. lib/perl5/site_perl/Bio/SearchIO/SearchWriterI.pm
  556. lib/perl5/site_perl/Bio/SearchIO/Writer/GbrowseGFF.pm
  557. lib/perl5/site_perl/Bio/SearchIO/Writer/HSPTableWriter.pm
  558. lib/perl5/site_perl/Bio/SearchIO/Writer/HTMLResultWriter.pm
  559. lib/perl5/site_perl/Bio/SearchIO/Writer/HitTableWriter.pm
  560. lib/perl5/site_perl/Bio/SearchIO/Writer/ResultTableWriter.pm
  561. lib/perl5/site_perl/Bio/SearchIO/Writer/TextResultWriter.pm
  562. lib/perl5/site_perl/Bio/SearchIO/axt.pm
  563. lib/perl5/site_perl/Bio/SearchIO/blast.pm
  564. lib/perl5/site_perl/Bio/SearchIO/blast_pull.pm
  565. lib/perl5/site_perl/Bio/SearchIO/blasttable.pm
  566. lib/perl5/site_perl/Bio/SearchIO/cross_match.pm
  567. lib/perl5/site_perl/Bio/SearchIO/erpin.pm
  568. lib/perl5/site_perl/Bio/SearchIO/exonerate.pm
  569. lib/perl5/site_perl/Bio/SearchIO/fasta.pm
  570. lib/perl5/site_perl/Bio/SearchIO/gmap_f9.pm
  571. lib/perl5/site_perl/Bio/SearchIO/hmmer.pm
  572. lib/perl5/site_perl/Bio/SearchIO/hmmer2.pm
  573. lib/perl5/site_perl/Bio/SearchIO/hmmer3.pm
  574. lib/perl5/site_perl/Bio/SearchIO/hmmer_pull.pm
  575. lib/perl5/site_perl/Bio/SearchIO/infernal.pm
  576. lib/perl5/site_perl/Bio/SearchIO/megablast.pm
  577. lib/perl5/site_perl/Bio/SearchIO/psl.pm
  578. lib/perl5/site_perl/Bio/SearchIO/rnamotif.pm
  579. lib/perl5/site_perl/Bio/SearchIO/sim4.pm
  580. lib/perl5/site_perl/Bio/SearchIO/waba.pm
  581. lib/perl5/site_perl/Bio/SearchIO/wise.pm
  582. lib/perl5/site_perl/Bio/Seq.pm
  583. lib/perl5/site_perl/Bio/Seq/BaseSeqProcessor.pm
  584. lib/perl5/site_perl/Bio/Seq/EncodedSeq.pm
  585. lib/perl5/site_perl/Bio/Seq/LargeLocatableSeq.pm
  586. lib/perl5/site_perl/Bio/Seq/LargePrimarySeq.pm
  587. lib/perl5/site_perl/Bio/Seq/LargeSeq.pm
  588. lib/perl5/site_perl/Bio/Seq/LargeSeqI.pm
  589. lib/perl5/site_perl/Bio/Seq/Meta.pm
  590. lib/perl5/site_perl/Bio/Seq/Meta/Array.pm
  591. lib/perl5/site_perl/Bio/Seq/MetaI.pm
  592. lib/perl5/site_perl/Bio/Seq/PrimaryQual.pm
  593. lib/perl5/site_perl/Bio/Seq/PrimedSeq.pm
  594. lib/perl5/site_perl/Bio/Seq/QualI.pm
  595. lib/perl5/site_perl/Bio/Seq/Quality.pm
  596. lib/perl5/site_perl/Bio/Seq/RichSeq.pm
  597. lib/perl5/site_perl/Bio/Seq/RichSeqI.pm
  598. lib/perl5/site_perl/Bio/Seq/SeqBuilder.pm
  599. lib/perl5/site_perl/Bio/Seq/SeqFactory.pm
  600. lib/perl5/site_perl/Bio/Seq/SeqFastaSpeedFactory.pm
  601. lib/perl5/site_perl/Bio/Seq/SeqWithQuality.pm
  602. lib/perl5/site_perl/Bio/Seq/SequenceTrace.pm
  603. lib/perl5/site_perl/Bio/Seq/SimulatedRead.pm
  604. lib/perl5/site_perl/Bio/Seq/TraceI.pm
  605. lib/perl5/site_perl/Bio/SeqAnalysisParserI.pm
  606. lib/perl5/site_perl/Bio/SeqEvolution/DNAPoint.pm
  607. lib/perl5/site_perl/Bio/SeqEvolution/EvolutionI.pm
  608. lib/perl5/site_perl/Bio/SeqEvolution/Factory.pm
  609. lib/perl5/site_perl/Bio/SeqFeature/Amplicon.pm
  610. lib/perl5/site_perl/Bio/SeqFeature/AnnotationAdaptor.pm
  611. lib/perl5/site_perl/Bio/SeqFeature/Collection.pm
  612. lib/perl5/site_perl/Bio/SeqFeature/CollectionI.pm
  613. lib/perl5/site_perl/Bio/SeqFeature/Computation.pm
  614. lib/perl5/site_perl/Bio/SeqFeature/FeaturePair.pm
  615. lib/perl5/site_perl/Bio/SeqFeature/Gene/Exon.pm
  616. lib/perl5/site_perl/Bio/SeqFeature/Gene/ExonI.pm
  617. lib/perl5/site_perl/Bio/SeqFeature/Gene/GeneStructure.pm
  618. lib/perl5/site_perl/Bio/SeqFeature/Gene/GeneStructureI.pm
  619. lib/perl5/site_perl/Bio/SeqFeature/Gene/Intron.pm
  620. lib/perl5/site_perl/Bio/SeqFeature/Gene/NC_Feature.pm
  621. lib/perl5/site_perl/Bio/SeqFeature/Gene/Poly_A_site.pm
  622. lib/perl5/site_perl/Bio/SeqFeature/Gene/Promoter.pm
  623. lib/perl5/site_perl/Bio/SeqFeature/Gene/Transcript.pm
  624. lib/perl5/site_perl/Bio/SeqFeature/Gene/TranscriptI.pm
  625. lib/perl5/site_perl/Bio/SeqFeature/Gene/UTR.pm
  626. lib/perl5/site_perl/Bio/SeqFeature/Generic.pm
  627. lib/perl5/site_perl/Bio/SeqFeature/Lite.pm
  628. lib/perl5/site_perl/Bio/SeqFeature/PositionProxy.pm
  629. lib/perl5/site_perl/Bio/SeqFeature/Primer.pm
  630. lib/perl5/site_perl/Bio/SeqFeature/SiRNA/Oligo.pm
  631. lib/perl5/site_perl/Bio/SeqFeature/SiRNA/Pair.pm
  632. lib/perl5/site_perl/Bio/SeqFeature/Similarity.pm
  633. lib/perl5/site_perl/Bio/SeqFeature/SimilarityPair.pm
  634. lib/perl5/site_perl/Bio/SeqFeature/SubSeq.pm
  635. lib/perl5/site_perl/Bio/SeqFeature/Tools/FeatureNamer.pm
  636. lib/perl5/site_perl/Bio/SeqFeature/Tools/IDHandler.pm
  637. lib/perl5/site_perl/Bio/SeqFeature/Tools/TypeMapper.pm
  638. lib/perl5/site_perl/Bio/SeqFeature/Tools/Unflattener.pm
  639. lib/perl5/site_perl/Bio/SeqFeature/TypedSeqFeatureI.pm
  640. lib/perl5/site_perl/Bio/SeqFeatureI.pm
  641. lib/perl5/site_perl/Bio/SeqI.pm
  642. lib/perl5/site_perl/Bio/SeqIO.pm
  643. lib/perl5/site_perl/Bio/SeqIO/FTHelper.pm
  644. lib/perl5/site_perl/Bio/SeqIO/Handler/GenericRichSeqHandler.pm
  645. lib/perl5/site_perl/Bio/SeqIO/MultiFile.pm
  646. lib/perl5/site_perl/Bio/SeqIO/abi.pm
  647. lib/perl5/site_perl/Bio/SeqIO/ace.pm
  648. lib/perl5/site_perl/Bio/SeqIO/agave.pm
  649. lib/perl5/site_perl/Bio/SeqIO/alf.pm
  650. lib/perl5/site_perl/Bio/SeqIO/asciitree.pm
  651. lib/perl5/site_perl/Bio/SeqIO/bsml.pm
  652. lib/perl5/site_perl/Bio/SeqIO/bsml_sax.pm
  653. lib/perl5/site_perl/Bio/SeqIO/chadoxml.pm
  654. lib/perl5/site_perl/Bio/SeqIO/chaos.pm
  655. lib/perl5/site_perl/Bio/SeqIO/chaosxml.pm
  656. lib/perl5/site_perl/Bio/SeqIO/ctf.pm
  657. lib/perl5/site_perl/Bio/SeqIO/embl.pm
  658. lib/perl5/site_perl/Bio/SeqIO/embldriver.pm
  659. lib/perl5/site_perl/Bio/SeqIO/entrezgene.pm
  660. lib/perl5/site_perl/Bio/SeqIO/excel.pm
  661. lib/perl5/site_perl/Bio/SeqIO/exp.pm
  662. lib/perl5/site_perl/Bio/SeqIO/fasta.pm
  663. lib/perl5/site_perl/Bio/SeqIO/fastq.pm
  664. lib/perl5/site_perl/Bio/SeqIO/flybase_chadoxml.pm
  665. lib/perl5/site_perl/Bio/SeqIO/game.pm
  666. lib/perl5/site_perl/Bio/SeqIO/game/featHandler.pm
  667. lib/perl5/site_perl/Bio/SeqIO/game/gameHandler.pm
  668. lib/perl5/site_perl/Bio/SeqIO/game/gameSubs.pm
  669. lib/perl5/site_perl/Bio/SeqIO/game/gameWriter.pm
  670. lib/perl5/site_perl/Bio/SeqIO/game/seqHandler.pm
  671. lib/perl5/site_perl/Bio/SeqIO/gbdriver.pm
  672. lib/perl5/site_perl/Bio/SeqIO/gbxml.pm
  673. lib/perl5/site_perl/Bio/SeqIO/gcg.pm
  674. lib/perl5/site_perl/Bio/SeqIO/genbank.pm
  675. lib/perl5/site_perl/Bio/SeqIO/interpro.pm
  676. lib/perl5/site_perl/Bio/SeqIO/kegg.pm
  677. lib/perl5/site_perl/Bio/SeqIO/largefasta.pm
  678. lib/perl5/site_perl/Bio/SeqIO/lasergene.pm
  679. lib/perl5/site_perl/Bio/SeqIO/locuslink.pm
  680. lib/perl5/site_perl/Bio/SeqIO/mbsout.pm
  681. lib/perl5/site_perl/Bio/SeqIO/metafasta.pm
  682. lib/perl5/site_perl/Bio/SeqIO/msout.pm
  683. lib/perl5/site_perl/Bio/SeqIO/nexml.pm
  684. lib/perl5/site_perl/Bio/SeqIO/phd.pm
  685. lib/perl5/site_perl/Bio/SeqIO/pir.pm
  686. lib/perl5/site_perl/Bio/SeqIO/pln.pm
  687. lib/perl5/site_perl/Bio/SeqIO/qual.pm
  688. lib/perl5/site_perl/Bio/SeqIO/raw.pm
  689. lib/perl5/site_perl/Bio/SeqIO/scf.pm
  690. lib/perl5/site_perl/Bio/SeqIO/seqxml.pm
  691. lib/perl5/site_perl/Bio/SeqIO/strider.pm
  692. lib/perl5/site_perl/Bio/SeqIO/swiss.pm
  693. lib/perl5/site_perl/Bio/SeqIO/swissdriver.pm
  694. lib/perl5/site_perl/Bio/SeqIO/tab.pm
  695. lib/perl5/site_perl/Bio/SeqIO/table.pm
  696. lib/perl5/site_perl/Bio/SeqIO/tigr.pm
  697. lib/perl5/site_perl/Bio/SeqIO/tigrxml.pm
  698. lib/perl5/site_perl/Bio/SeqIO/tinyseq.pm
  699. lib/perl5/site_perl/Bio/SeqIO/tinyseq/tinyseqHandler.pm
  700. lib/perl5/site_perl/Bio/SeqIO/ztr.pm
  701. lib/perl5/site_perl/Bio/SeqUtils.pm
  702. lib/perl5/site_perl/Bio/SimpleAlign.pm
  703. lib/perl5/site_perl/Bio/SimpleAnalysisI.pm
  704. lib/perl5/site_perl/Bio/Species.pm
  705. lib/perl5/site_perl/Bio/Structure/Atom.pm
  706. lib/perl5/site_perl/Bio/Structure/Chain.pm
  707. lib/perl5/site_perl/Bio/Structure/Entry.pm
  708. lib/perl5/site_perl/Bio/Structure/IO.pm
  709. lib/perl5/site_perl/Bio/Structure/IO/pdb.pm
  710. lib/perl5/site_perl/Bio/Structure/Model.pm
  711. lib/perl5/site_perl/Bio/Structure/Residue.pm
  712. lib/perl5/site_perl/Bio/Structure/SecStr/DSSP/Res.pm
  713. lib/perl5/site_perl/Bio/Structure/SecStr/STRIDE/Res.pm
  714. lib/perl5/site_perl/Bio/Structure/StructureI.pm
  715. lib/perl5/site_perl/Bio/Symbol/Alphabet.pm
  716. lib/perl5/site_perl/Bio/Symbol/AlphabetI.pm
  717. lib/perl5/site_perl/Bio/Symbol/DNAAlphabet.pm
  718. lib/perl5/site_perl/Bio/Symbol/ProteinAlphabet.pm
  719. lib/perl5/site_perl/Bio/Symbol/Symbol.pm
  720. lib/perl5/site_perl/Bio/Symbol/SymbolI.pm
  721. lib/perl5/site_perl/Bio/Taxon.pm
  722. lib/perl5/site_perl/Bio/Taxonomy.pm
  723. lib/perl5/site_perl/Bio/Taxonomy/FactoryI.pm
  724. lib/perl5/site_perl/Bio/Taxonomy/Node.pm
  725. lib/perl5/site_perl/Bio/Taxonomy/Taxon.pm
  726. lib/perl5/site_perl/Bio/Taxonomy/Tree.pm
  727. lib/perl5/site_perl/Bio/Tools/AlignFactory.pm
  728. lib/perl5/site_perl/Bio/Tools/Alignment/Consed.pm
  729. lib/perl5/site_perl/Bio/Tools/Alignment/Trim.pm
  730. lib/perl5/site_perl/Bio/Tools/AmpliconSearch.pm
  731. lib/perl5/site_perl/Bio/Tools/Analysis/DNA/ESEfinder.pm
  732. lib/perl5/site_perl/Bio/Tools/Analysis/Protein/Domcut.pm
  733. lib/perl5/site_perl/Bio/Tools/Analysis/Protein/ELM.pm
  734. lib/perl5/site_perl/Bio/Tools/Analysis/Protein/GOR4.pm
  735. lib/perl5/site_perl/Bio/Tools/Analysis/Protein/HNN.pm
  736. lib/perl5/site_perl/Bio/Tools/Analysis/Protein/NetPhos.pm
  737. lib/perl5/site_perl/Bio/Tools/Analysis/Protein/Scansite.pm
  738. lib/perl5/site_perl/Bio/Tools/Analysis/Protein/Sopma.pm
  739. lib/perl5/site_perl/Bio/Tools/Analysis/SimpleAnalysisBase.pm
  740. lib/perl5/site_perl/Bio/Tools/AnalysisResult.pm
  741. lib/perl5/site_perl/Bio/Tools/Blat.pm
  742. lib/perl5/site_perl/Bio/Tools/CodonTable.pm
  743. lib/perl5/site_perl/Bio/Tools/Coil.pm
  744. lib/perl5/site_perl/Bio/Tools/ECnumber.pm
  745. lib/perl5/site_perl/Bio/Tools/EMBOSS/Palindrome.pm
  746. lib/perl5/site_perl/Bio/Tools/EPCR.pm
  747. lib/perl5/site_perl/Bio/Tools/ESTScan.pm
  748. lib/perl5/site_perl/Bio/Tools/Eponine.pm
  749. lib/perl5/site_perl/Bio/Tools/Est2Genome.pm
  750. lib/perl5/site_perl/Bio/Tools/Fgenesh.pm
  751. lib/perl5/site_perl/Bio/Tools/FootPrinter.pm
  752. lib/perl5/site_perl/Bio/Tools/GFF.pm
  753. lib/perl5/site_perl/Bio/Tools/Gel.pm
  754. lib/perl5/site_perl/Bio/Tools/Geneid.pm
  755. lib/perl5/site_perl/Bio/Tools/Genemark.pm
  756. lib/perl5/site_perl/Bio/Tools/Genewise.pm
  757. lib/perl5/site_perl/Bio/Tools/Genomewise.pm
  758. lib/perl5/site_perl/Bio/Tools/Genscan.pm
  759. lib/perl5/site_perl/Bio/Tools/Glimmer.pm
  760. lib/perl5/site_perl/Bio/Tools/Grail.pm
  761. lib/perl5/site_perl/Bio/Tools/GuessSeqFormat.pm
  762. lib/perl5/site_perl/Bio/Tools/HMMER/Domain.pm
  763. lib/perl5/site_perl/Bio/Tools/HMMER/Results.pm
  764. lib/perl5/site_perl/Bio/Tools/HMMER/Set.pm
  765. lib/perl5/site_perl/Bio/Tools/Hmmpfam.pm
  766. lib/perl5/site_perl/Bio/Tools/IUPAC.pm
  767. lib/perl5/site_perl/Bio/Tools/Lucy.pm
  768. lib/perl5/site_perl/Bio/Tools/MZEF.pm
  769. lib/perl5/site_perl/Bio/Tools/Match.pm
  770. lib/perl5/site_perl/Bio/Tools/OddCodes.pm
  771. lib/perl5/site_perl/Bio/Tools/Phylo/Gerp.pm
  772. lib/perl5/site_perl/Bio/Tools/Phylo/Gumby.pm
  773. lib/perl5/site_perl/Bio/Tools/Phylo/Molphy.pm
  774. lib/perl5/site_perl/Bio/Tools/Phylo/Molphy/Result.pm
  775. lib/perl5/site_perl/Bio/Tools/Phylo/Phylip/ProtDist.pm
  776. lib/perl5/site_perl/Bio/Tools/Prediction/Exon.pm
  777. lib/perl5/site_perl/Bio/Tools/Prediction/Gene.pm
  778. lib/perl5/site_perl/Bio/Tools/Primer/Assessor/Base.pm
  779. lib/perl5/site_perl/Bio/Tools/Primer/AssessorI.pm
  780. lib/perl5/site_perl/Bio/Tools/Primer/Feature.pm
  781. lib/perl5/site_perl/Bio/Tools/Primer/Pair.pm
  782. lib/perl5/site_perl/Bio/Tools/Primer3.pm
  783. lib/perl5/site_perl/Bio/Tools/Prints.pm
  784. lib/perl5/site_perl/Bio/Tools/Profile.pm
  785. lib/perl5/site_perl/Bio/Tools/Promoterwise.pm
  786. lib/perl5/site_perl/Bio/Tools/PrositeScan.pm
  787. lib/perl5/site_perl/Bio/Tools/Protparam.pm
  788. lib/perl5/site_perl/Bio/Tools/Pseudowise.pm
  789. lib/perl5/site_perl/Bio/Tools/QRNA.pm
  790. lib/perl5/site_perl/Bio/Tools/RandomDistFunctions.pm
  791. lib/perl5/site_perl/Bio/Tools/RepeatMasker.pm
  792. lib/perl5/site_perl/Bio/Tools/Run/GenericParameters.pm
  793. lib/perl5/site_perl/Bio/Tools/Run/ParametersI.pm
  794. lib/perl5/site_perl/Bio/Tools/Run/RemoteBlast.pm
  795. lib/perl5/site_perl/Bio/Tools/Seg.pm
  796. lib/perl5/site_perl/Bio/Tools/SeqPattern.pm
  797. lib/perl5/site_perl/Bio/Tools/SeqPattern/Backtranslate.pm
  798. lib/perl5/site_perl/Bio/Tools/SeqStats.pm
  799. lib/perl5/site_perl/Bio/Tools/SeqWords.pm
  800. lib/perl5/site_perl/Bio/Tools/SiRNA.pm
  801. lib/perl5/site_perl/Bio/Tools/SiRNA/Ruleset/saigo.pm
  802. lib/perl5/site_perl/Bio/Tools/SiRNA/Ruleset/tuschl.pm
  803. lib/perl5/site_perl/Bio/Tools/Sigcleave.pm
  804. lib/perl5/site_perl/Bio/Tools/Signalp.pm
  805. lib/perl5/site_perl/Bio/Tools/Signalp/ExtendedSignalp.pm
  806. lib/perl5/site_perl/Bio/Tools/Sim4/Exon.pm
  807. lib/perl5/site_perl/Bio/Tools/Sim4/Results.pm
  808. lib/perl5/site_perl/Bio/Tools/Spidey/Exon.pm
  809. lib/perl5/site_perl/Bio/Tools/Spidey/Results.pm
  810. lib/perl5/site_perl/Bio/Tools/TandemRepeatsFinder.pm
  811. lib/perl5/site_perl/Bio/Tools/TargetP.pm
  812. lib/perl5/site_perl/Bio/Tools/Tmhmm.pm
  813. lib/perl5/site_perl/Bio/Tools/dpAlign.pm
  814. lib/perl5/site_perl/Bio/Tools/ipcress.pm
  815. lib/perl5/site_perl/Bio/Tools/isPcr.pm
  816. lib/perl5/site_perl/Bio/Tools/pICalculator.pm
  817. lib/perl5/site_perl/Bio/Tools/pSW.pm
  818. lib/perl5/site_perl/Bio/Tools/tRNAscanSE.pm
  819. lib/perl5/site_perl/Bio/Tree/AlleleNode.pm
  820. lib/perl5/site_perl/Bio/Tree/AnnotatableNode.pm
  821. lib/perl5/site_perl/Bio/Tree/Compatible.pm
  822. lib/perl5/site_perl/Bio/Tree/DistanceFactory.pm
  823. lib/perl5/site_perl/Bio/Tree/Draw/Cladogram.pm
  824. lib/perl5/site_perl/Bio/Tree/Node.pm
  825. lib/perl5/site_perl/Bio/Tree/NodeI.pm
  826. lib/perl5/site_perl/Bio/Tree/NodeNHX.pm
  827. lib/perl5/site_perl/Bio/Tree/RandomFactory.pm
  828. lib/perl5/site_perl/Bio/Tree/Statistics.pm
  829. lib/perl5/site_perl/Bio/Tree/Tree.pm
  830. lib/perl5/site_perl/Bio/Tree/TreeFunctionsI.pm
  831. lib/perl5/site_perl/Bio/Tree/TreeI.pm
  832. lib/perl5/site_perl/Bio/TreeIO.pm
  833. lib/perl5/site_perl/Bio/TreeIO/NewickParser.pm
  834. lib/perl5/site_perl/Bio/TreeIO/TreeEventBuilder.pm
  835. lib/perl5/site_perl/Bio/TreeIO/cluster.pm
  836. lib/perl5/site_perl/Bio/TreeIO/lintree.pm
  837. lib/perl5/site_perl/Bio/TreeIO/newick.pm
  838. lib/perl5/site_perl/Bio/TreeIO/nexml.pm
  839. lib/perl5/site_perl/Bio/TreeIO/nexus.pm
  840. lib/perl5/site_perl/Bio/TreeIO/nhx.pm
  841. lib/perl5/site_perl/Bio/TreeIO/pag.pm
  842. lib/perl5/site_perl/Bio/TreeIO/phyloxml.pm
  843. lib/perl5/site_perl/Bio/TreeIO/svggraph.pm
  844. lib/perl5/site_perl/Bio/TreeIO/tabtree.pm
  845. lib/perl5/site_perl/Bio/UpdateableSeqI.pm
  846. lib/perl5/site_perl/Bio/Variation/AAChange.pm
  847. lib/perl5/site_perl/Bio/Variation/AAReverseMutate.pm
  848. lib/perl5/site_perl/Bio/Variation/Allele.pm
  849. lib/perl5/site_perl/Bio/Variation/DNAMutation.pm
  850. lib/perl5/site_perl/Bio/Variation/IO.pm
  851. lib/perl5/site_perl/Bio/Variation/IO/flat.pm
  852. lib/perl5/site_perl/Bio/Variation/IO/xml.pm
  853. lib/perl5/site_perl/Bio/Variation/RNAChange.pm
  854. lib/perl5/site_perl/Bio/Variation/SNP.pm
  855. lib/perl5/site_perl/Bio/Variation/SeqDiff.pm
  856. lib/perl5/site_perl/Bio/Variation/VariantI.pm
  857. lib/perl5/site_perl/Bio/WebAgent.pm
  858. lib/perl5/site_perl/man/man1/bp_aacomp.pl.1.gz
  859. lib/perl5/site_perl/man/man1/bp_biofetch_genbank_proxy.pl.1.gz
  860. lib/perl5/site_perl/man/man1/bp_bioflat_index.pl.1.gz
  861. lib/perl5/site_perl/man/man1/bp_biogetseq.pl.1.gz
  862. lib/perl5/site_perl/man/man1/bp_blast2tree.pl.1.gz
  863. lib/perl5/site_perl/man/man1/bp_bulk_load_gff.pl.1.gz
  864. lib/perl5/site_perl/man/man1/bp_chaos_plot.pl.1.gz
  865. lib/perl5/site_perl/man/man1/bp_classify_hits_kingdom.pl.1.gz
  866. lib/perl5/site_perl/man/man1/bp_composite_LD.pl.1.gz
  867. lib/perl5/site_perl/man/man1/bp_dbsplit.pl.1.gz
  868. lib/perl5/site_perl/man/man1/bp_download_query_genbank.pl.1.gz
  869. lib/perl5/site_perl/man/man1/bp_extract_feature_seq.pl.1.gz
  870. lib/perl5/site_perl/man/man1/bp_fast_load_gff.pl.1.gz
  871. lib/perl5/site_perl/man/man1/bp_fastam9_to_table.pl.1.gz
  872. lib/perl5/site_perl/man/man1/bp_fetch.pl.1.gz
  873. lib/perl5/site_perl/man/man1/bp_filter_search.pl.1.gz
  874. lib/perl5/site_perl/man/man1/bp_find-blast-matches.pl.1.gz
  875. lib/perl5/site_perl/man/man1/bp_flanks.pl.1.gz
  876. lib/perl5/site_perl/man/man1/bp_gccalc.pl.1.gz
  877. lib/perl5/site_perl/man/man1/bp_genbank2gff.pl.1.gz
  878. lib/perl5/site_perl/man/man1/bp_genbank2gff3.pl.1.gz
  879. lib/perl5/site_perl/man/man1/bp_generate_histogram.pl.1.gz
  880. lib/perl5/site_perl/man/man1/bp_heterogeneity_test.pl.1.gz
  881. lib/perl5/site_perl/man/man1/bp_hivq.pl.1.gz
  882. lib/perl5/site_perl/man/man1/bp_hmmer_to_table.pl.1.gz
  883. lib/perl5/site_perl/man/man1/bp_index.pl.1.gz
  884. lib/perl5/site_perl/man/man1/bp_load_gff.pl.1.gz
  885. lib/perl5/site_perl/man/man1/bp_local_taxonomydb_query.pl.1.gz
  886. lib/perl5/site_perl/man/man1/bp_make_mrna_protein.pl.1.gz
  887. lib/perl5/site_perl/man/man1/bp_mask_by_search.pl.1.gz
  888. lib/perl5/site_perl/man/man1/bp_meta_gff.pl.1.gz
  889. lib/perl5/site_perl/man/man1/bp_mrtrans.pl.1.gz
  890. lib/perl5/site_perl/man/man1/bp_mutate.pl.1.gz
  891. lib/perl5/site_perl/man/man1/bp_netinstall.pl.1.gz
  892. lib/perl5/site_perl/man/man1/bp_nexus2nh.pl.1.gz
  893. lib/perl5/site_perl/man/man1/bp_nrdb.pl.1.gz
  894. lib/perl5/site_perl/man/man1/bp_oligo_count.pl.1.gz
  895. lib/perl5/site_perl/man/man1/bp_parse_hmmsearch.pl.1.gz
  896. lib/perl5/site_perl/man/man1/bp_process_gadfly.pl.1.gz
  897. lib/perl5/site_perl/man/man1/bp_process_sgd.pl.1.gz
  898. lib/perl5/site_perl/man/man1/bp_process_wormbase.pl.1.gz
  899. lib/perl5/site_perl/man/man1/bp_query_entrez_taxa.pl.1.gz
  900. lib/perl5/site_perl/man/man1/bp_remote_blast.pl.1.gz
  901. lib/perl5/site_perl/man/man1/bp_revtrans-motif.pl.1.gz
  902. lib/perl5/site_perl/man/man1/bp_search2alnblocks.pl.1.gz
  903. lib/perl5/site_perl/man/man1/bp_search2gff.pl.1.gz
  904. lib/perl5/site_perl/man/man1/bp_search2table.pl.1.gz
  905. lib/perl5/site_perl/man/man1/bp_search2tribe.pl.1.gz
  906. lib/perl5/site_perl/man/man1/bp_seq_length.pl.1.gz
  907. lib/perl5/site_perl/man/man1/bp_seqconvert.pl.1.gz
  908. lib/perl5/site_perl/man/man1/bp_seqcut.pl.1.gz
  909. lib/perl5/site_perl/man/man1/bp_seqfeature_load.pl.1.gz
  910. lib/perl5/site_perl/man/man1/bp_seqpart.pl.1.gz
  911. lib/perl5/site_perl/man/man1/bp_seqret.pl.1.gz
  912. lib/perl5/site_perl/man/man1/bp_seqretsplit.pl.1.gz
  913. lib/perl5/site_perl/man/man1/bp_split_seq.pl.1.gz
  914. lib/perl5/site_perl/man/man1/bp_sreformat.pl.1.gz
  915. lib/perl5/site_perl/man/man1/bp_taxid4species.pl.1.gz
  916. lib/perl5/site_perl/man/man1/bp_taxonomy2tree.pl.1.gz
  917. lib/perl5/site_perl/man/man1/bp_translate_seq.pl.1.gz
  918. lib/perl5/site_perl/man/man1/bp_tree2pag.pl.1.gz
  919. lib/perl5/site_perl/man/man1/bp_unflatten_seq.pl.1.gz
  920. lib/perl5/site_perl/man/man3/Bio::Align::AlignI.3.gz
  921. lib/perl5/site_perl/man/man3/Bio::Align::DNAStatistics.3.gz
  922. lib/perl5/site_perl/man/man3/Bio::Align::Graphics.3.gz
  923. lib/perl5/site_perl/man/man3/Bio::Align::PairwiseStatistics.3.gz
  924. lib/perl5/site_perl/man/man3/Bio::Align::ProteinStatistics.3.gz
  925. lib/perl5/site_perl/man/man3/Bio::Align::StatisticsI.3.gz
  926. lib/perl5/site_perl/man/man3/Bio::Align::Utilities.3.gz
  927. lib/perl5/site_perl/man/man3/Bio::AlignIO.3.gz
  928. lib/perl5/site_perl/man/man3/Bio::AlignIO::Handler::GenericAlignHandler.3.gz
  929. lib/perl5/site_perl/man/man3/Bio::AlignIO::arp.3.gz
  930. lib/perl5/site_perl/man/man3/Bio::AlignIO::bl2seq.3.gz
  931. lib/perl5/site_perl/man/man3/Bio::AlignIO::clustalw.3.gz
  932. lib/perl5/site_perl/man/man3/Bio::AlignIO::emboss.3.gz
  933. lib/perl5/site_perl/man/man3/Bio::AlignIO::fasta.3.gz
  934. lib/perl5/site_perl/man/man3/Bio::AlignIO::largemultifasta.3.gz
  935. lib/perl5/site_perl/man/man3/Bio::AlignIO::maf.3.gz
  936. lib/perl5/site_perl/man/man3/Bio::AlignIO::mase.3.gz
  937. lib/perl5/site_perl/man/man3/Bio::AlignIO::mega.3.gz
  938. lib/perl5/site_perl/man/man3/Bio::AlignIO::meme.3.gz
  939. lib/perl5/site_perl/man/man3/Bio::AlignIO::metafasta.3.gz
  940. lib/perl5/site_perl/man/man3/Bio::AlignIO::msf.3.gz
  941. lib/perl5/site_perl/man/man3/Bio::AlignIO::nexml.3.gz
  942. lib/perl5/site_perl/man/man3/Bio::AlignIO::nexus.3.gz
  943. lib/perl5/site_perl/man/man3/Bio::AlignIO::pfam.3.gz
  944. lib/perl5/site_perl/man/man3/Bio::AlignIO::phylip.3.gz
  945. lib/perl5/site_perl/man/man3/Bio::AlignIO::po.3.gz
  946. lib/perl5/site_perl/man/man3/Bio::AlignIO::proda.3.gz
  947. lib/perl5/site_perl/man/man3/Bio::AlignIO::prodom.3.gz
  948. lib/perl5/site_perl/man/man3/Bio::AlignIO::psi.3.gz
  949. lib/perl5/site_perl/man/man3/Bio::AlignIO::selex.3.gz
  950. lib/perl5/site_perl/man/man3/Bio::AlignIO::stockholm.3.gz
  951. lib/perl5/site_perl/man/man3/Bio::AlignIO::xmfa.3.gz
  952. lib/perl5/site_perl/man/man3/Bio::AnalysisI.3.gz
  953. lib/perl5/site_perl/man/man3/Bio::AnalysisParserI.3.gz
  954. lib/perl5/site_perl/man/man3/Bio::AnalysisResultI.3.gz
  955. lib/perl5/site_perl/man/man3/Bio::AnnotatableI.3.gz
  956. lib/perl5/site_perl/man/man3/Bio::Annotation::AnnotationFactory.3.gz
  957. lib/perl5/site_perl/man/man3/Bio::Annotation::Collection.3.gz
  958. lib/perl5/site_perl/man/man3/Bio::Annotation::Comment.3.gz
  959. lib/perl5/site_perl/man/man3/Bio::Annotation::DBLink.3.gz
  960. lib/perl5/site_perl/man/man3/Bio::Annotation::OntologyTerm.3.gz
  961. lib/perl5/site_perl/man/man3/Bio::Annotation::Reference.3.gz
  962. lib/perl5/site_perl/man/man3/Bio::Annotation::Relation.3.gz
  963. lib/perl5/site_perl/man/man3/Bio::Annotation::SimpleValue.3.gz
  964. lib/perl5/site_perl/man/man3/Bio::Annotation::StructuredValue.3.gz
  965. lib/perl5/site_perl/man/man3/Bio::Annotation::TagTree.3.gz
  966. lib/perl5/site_perl/man/man3/Bio::Annotation::Target.3.gz
  967. lib/perl5/site_perl/man/man3/Bio::Annotation::Tree.3.gz
  968. lib/perl5/site_perl/man/man3/Bio::Annotation::TypeManager.3.gz
  969. lib/perl5/site_perl/man/man3/Bio::AnnotationCollectionI.3.gz
  970. lib/perl5/site_perl/man/man3/Bio::AnnotationI.3.gz
  971. lib/perl5/site_perl/man/man3/Bio::Assembly::Contig.3.gz
  972. lib/perl5/site_perl/man/man3/Bio::Assembly::ContigAnalysis.3.gz
  973. lib/perl5/site_perl/man/man3/Bio::Assembly::IO.3.gz
  974. lib/perl5/site_perl/man/man3/Bio::Assembly::IO::ace.3.gz
  975. lib/perl5/site_perl/man/man3/Bio::Assembly::IO::bowtie.3.gz
  976. lib/perl5/site_perl/man/man3/Bio::Assembly::IO::maq.3.gz
  977. lib/perl5/site_perl/man/man3/Bio::Assembly::IO::phrap.3.gz
  978. lib/perl5/site_perl/man/man3/Bio::Assembly::IO::sam.3.gz
  979. lib/perl5/site_perl/man/man3/Bio::Assembly::IO::tigr.3.gz
  980. lib/perl5/site_perl/man/man3/Bio::Assembly::Scaffold.3.gz
  981. lib/perl5/site_perl/man/man3/Bio::Assembly::ScaffoldI.3.gz
  982. lib/perl5/site_perl/man/man3/Bio::Assembly::Singlet.3.gz
  983. lib/perl5/site_perl/man/man3/Bio::Assembly::Tools::ContigSpectrum.3.gz
  984. lib/perl5/site_perl/man/man3/Bio::Cluster::ClusterFactory.3.gz
  985. lib/perl5/site_perl/man/man3/Bio::Cluster::FamilyI.3.gz
  986. lib/perl5/site_perl/man/man3/Bio::Cluster::SequenceFamily.3.gz
  987. lib/perl5/site_perl/man/man3/Bio::Cluster::UniGene.3.gz
  988. lib/perl5/site_perl/man/man3/Bio::Cluster::UniGeneI.3.gz
  989. lib/perl5/site_perl/man/man3/Bio::ClusterI.3.gz
  990. lib/perl5/site_perl/man/man3/Bio::ClusterIO.3.gz
  991. lib/perl5/site_perl/man/man3/Bio::ClusterIO::dbsnp.3.gz
  992. lib/perl5/site_perl/man/man3/Bio::ClusterIO::unigene.3.gz
  993. lib/perl5/site_perl/man/man3/Bio::CodonUsage::IO.3.gz
  994. lib/perl5/site_perl/man/man3/Bio::CodonUsage::Table.3.gz
  995. lib/perl5/site_perl/man/man3/Bio::DB::Ace.3.gz
  996. lib/perl5/site_perl/man/man3/Bio::DB::BioFetch.3.gz
  997. lib/perl5/site_perl/man/man3/Bio::DB::CUTG.3.gz
  998. lib/perl5/site_perl/man/man3/Bio::DB::DBFetch.3.gz
  999. lib/perl5/site_perl/man/man3/Bio::DB::EMBL.3.gz
  1000. lib/perl5/site_perl/man/man3/Bio::DB::EntrezGene.3.gz
  1001. lib/perl5/site_perl/man/man3/Bio::DB::Expression.3.gz
  1002. lib/perl5/site_perl/man/man3/Bio::DB::Expression::geo.3.gz
  1003. lib/perl5/site_perl/man/man3/Bio::DB::Failover.3.gz
  1004. lib/perl5/site_perl/man/man3/Bio::DB::Fasta.3.gz
  1005. lib/perl5/site_perl/man/man3/Bio::DB::FileCache.3.gz
  1006. lib/perl5/site_perl/man/man3/Bio::DB::Flat.3.gz
  1007. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB.3.gz
  1008. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::embl.3.gz
  1009. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::fasta.3.gz
  1010. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::genbank.3.gz
  1011. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::swiss.3.gz
  1012. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BinarySearch.3.gz
  1013. lib/perl5/site_perl/man/man3/Bio::DB::GFF.3.gz
  1014. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::ace.3.gz
  1015. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3.gz
  1016. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3.gz
  1017. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::biofetch.3.gz
  1018. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::biofetch_oracle.3.gz
  1019. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi.3.gz
  1020. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::caching_handle.3.gz
  1021. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::iterator.3.gz
  1022. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::mysql.3.gz
  1023. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlace.3.gz
  1024. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3.gz
  1025. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3.gz
  1026. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::oracle.3.gz
  1027. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::oracleace.3.gz
  1028. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::pg.3.gz
  1029. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::dbi::pg_fts.3.gz
  1030. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::memory.3.gz
  1031. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3.gz
  1032. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Adaptor::memory::iterator.3.gz
  1033. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator.3.gz
  1034. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::alignment.3.gz
  1035. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::clone.3.gz
  1036. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::coding.3.gz
  1037. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::gene.3.gz
  1038. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::match.3.gz
  1039. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::none.3.gz
  1040. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::orf.3.gz
  1041. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::processed_transcript.3.gz
  1042. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::so_transcript.3.gz
  1043. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::transcript.3.gz
  1044. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_acembly.3.gz
  1045. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_ensgene.3.gz
  1046. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_genscan.3.gz
  1047. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_refgene.3.gz
  1048. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22.3.gz
  1049. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3.gz
  1050. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_softberry.3.gz
  1051. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_twinscan.3.gz
  1052. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Aggregator::ucsc_unigene.3.gz
  1053. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Featname.3.gz
  1054. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Feature.3.gz
  1055. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Homol.3.gz
  1056. lib/perl5/site_perl/man/man3/Bio::DB::GFF::RelSegment.3.gz
  1057. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Segment.3.gz
  1058. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Typename.3.gz
  1059. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Util::Binning.3.gz
  1060. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Util::Rearrange.3.gz
  1061. lib/perl5/site_perl/man/man3/Bio::DB::GenBank.3.gz
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  1063. lib/perl5/site_perl/man/man3/Bio::DB::GenericWebAgent.3.gz
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  1065. lib/perl5/site_perl/man/man3/Bio::DB::HIV::HIVAnnotProcessor.3.gz
  1066. lib/perl5/site_perl/man/man3/Bio::DB::HIV::HIVQueryHelper.3.gz
  1067. lib/perl5/site_perl/man/man3/Bio::DB::InMemoryCache.3.gz
  1068. lib/perl5/site_perl/man/man3/Bio::DB::IndexedBase.3.gz
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  1070. lib/perl5/site_perl/man/man3/Bio::DB::MeSH.3.gz
  1071. lib/perl5/site_perl/man/man3/Bio::DB::NCBIHelper.3.gz
  1072. lib/perl5/site_perl/man/man3/Bio::DB::Qual.3.gz
  1073. lib/perl5/site_perl/man/man3/Bio::DB::Query::GenBank.3.gz
  1074. lib/perl5/site_perl/man/man3/Bio::DB::Query::HIVQuery.3.gz
  1075. lib/perl5/site_perl/man/man3/Bio::DB::Query::WebQuery.3.gz
  1076. lib/perl5/site_perl/man/man3/Bio::DB::QueryI.3.gz
  1077. lib/perl5/site_perl/man/man3/Bio::DB::RandomAccessI.3.gz
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  1081. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature.3.gz
  1082. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3.gz
  1083. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3.gz
  1084. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3.gz
  1085. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Segment.3.gz
  1086. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store.3.gz
  1087. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3.gz
  1088. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3.gz
  1089. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3.gz
  1090. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3.gz
  1091. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3.gz
  1092. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3.gz
  1093. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3.gz
  1094. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3.gz
  1095. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::Loader.3.gz
  1096. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::bdb.3.gz
  1097. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3.gz
  1098. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3.gz
  1099. lib/perl5/site_perl/man/man3/Bio::DB::SeqFeature::Store::memory.3.gz
  1100. lib/perl5/site_perl/man/man3/Bio::DB::SeqI.3.gz
  1101. lib/perl5/site_perl/man/man3/Bio::DB::SeqVersion.3.gz
  1102. lib/perl5/site_perl/man/man3/Bio::DB::SeqVersion::gi.3.gz
  1103. lib/perl5/site_perl/man/man3/Bio::DB::SwissProt.3.gz
  1104. lib/perl5/site_perl/man/man3/Bio::DB::TFBS.3.gz
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  1107. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::entrez.3.gz
  1108. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::flatfile.3.gz
  1109. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::greengenes.3.gz
  1110. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::list.3.gz
  1111. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::silva.3.gz
  1112. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::sqlite.3.gz
  1113. lib/perl5/site_perl/man/man3/Bio::DB::Universal.3.gz
  1114. lib/perl5/site_perl/man/man3/Bio::DB::UpdateableSeqI.3.gz
  1115. lib/perl5/site_perl/man/man3/Bio::DB::WebDBSeqI.3.gz
  1116. lib/perl5/site_perl/man/man3/Bio::DBLinkContainerI.3.gz
  1117. lib/perl5/site_perl/man/man3/Bio::Das::FeatureTypeI.3.gz
  1118. lib/perl5/site_perl/man/man3/Bio::Das::SegmentI.3.gz
  1119. lib/perl5/site_perl/man/man3/Bio::DasI.3.gz
  1120. lib/perl5/site_perl/man/man3/Bio::DescribableI.3.gz
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  1127. lib/perl5/site_perl/man/man3/Bio::Factory::FTLocationFactory.3.gz
  1128. lib/perl5/site_perl/man/man3/Bio::Factory::LocationFactoryI.3.gz
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  1132. lib/perl5/site_perl/man/man3/Bio::Factory::ObjectFactoryI.3.gz
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  1134. lib/perl5/site_perl/man/man3/Bio::Factory::SeqAnalysisParserFactoryI.3.gz
  1135. lib/perl5/site_perl/man/man3/Bio::Factory::SequenceFactoryI.3.gz
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  1144. lib/perl5/site_perl/man/man3/Bio::Index::AbstractSeq.3.gz
  1145. lib/perl5/site_perl/man/man3/Bio::Index::Blast.3.gz
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  1147. lib/perl5/site_perl/man/man3/Bio::Index::EMBL.3.gz
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  1155. lib/perl5/site_perl/man/man3/Bio::Index::Swissprot.3.gz
  1156. lib/perl5/site_perl/man/man3/Bio::LiveSeq::AARange.3.gz
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  1159. lib/perl5/site_perl/man/man3/Bio::LiveSeq::DNA.3.gz
  1160. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Exon.3.gz
  1161. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Gene.3.gz
  1162. lib/perl5/site_perl/man/man3/Bio::LiveSeq::IO::BioPerl.3.gz
  1163. lib/perl5/site_perl/man/man3/Bio::LiveSeq::IO::Loader.3.gz
  1164. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Intron.3.gz
  1165. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Mutation.3.gz
  1166. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Mutator.3.gz
  1167. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Prim_Transcript.3.gz
  1168. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Range.3.gz
  1169. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Repeat_Region.3.gz
  1170. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Repeat_Unit.3.gz
  1171. lib/perl5/site_perl/man/man3/Bio::LiveSeq::SeqI.3.gz
  1172. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Transcript.3.gz
  1173. lib/perl5/site_perl/man/man3/Bio::LiveSeq::Translation.3.gz
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  1175. lib/perl5/site_perl/man/man3/Bio::Location::Atomic.3.gz
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  1177. lib/perl5/site_perl/man/man3/Bio::Location::CoordinatePolicyI.3.gz
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  1180. lib/perl5/site_perl/man/man3/Bio::Location::NarrowestCoordPolicy.3.gz
  1181. lib/perl5/site_perl/man/man3/Bio::Location::Simple.3.gz
  1182. lib/perl5/site_perl/man/man3/Bio::Location::Split.3.gz
  1183. lib/perl5/site_perl/man/man3/Bio::Location::SplitLocationI.3.gz
  1184. lib/perl5/site_perl/man/man3/Bio::Location::WidestCoordPolicy.3.gz
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  1186. lib/perl5/site_perl/man/man3/Bio::Map::Clone.3.gz
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  1197. lib/perl5/site_perl/man/man3/Bio::Map::LinkageMap.3.gz
  1198. lib/perl5/site_perl/man/man3/Bio::Map::LinkagePosition.3.gz
  1199. lib/perl5/site_perl/man/man3/Bio::Map::MapI.3.gz
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  1203. lib/perl5/site_perl/man/man3/Bio::Map::MarkerI.3.gz
  1204. lib/perl5/site_perl/man/man3/Bio::Map::Microsatellite.3.gz
  1205. lib/perl5/site_perl/man/man3/Bio::Map::OrderedPosition.3.gz
  1206. lib/perl5/site_perl/man/man3/Bio::Map::OrderedPositionWithDistance.3.gz
  1207. lib/perl5/site_perl/man/man3/Bio::Map::Physical.3.gz
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  1209. lib/perl5/site_perl/man/man3/Bio::Map::PositionHandler.3.gz
  1210. lib/perl5/site_perl/man/man3/Bio::Map::PositionHandlerI.3.gz
  1211. lib/perl5/site_perl/man/man3/Bio::Map::PositionI.3.gz
  1212. lib/perl5/site_perl/man/man3/Bio::Map::PositionWithSequence.3.gz
  1213. lib/perl5/site_perl/man/man3/Bio::Map::Prediction.3.gz
  1214. lib/perl5/site_perl/man/man3/Bio::Map::Relative.3.gz
  1215. lib/perl5/site_perl/man/man3/Bio::Map::RelativeI.3.gz
  1216. lib/perl5/site_perl/man/man3/Bio::Map::SimpleMap.3.gz
  1217. lib/perl5/site_perl/man/man3/Bio::Map::TranscriptionFactor.3.gz
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  1219. lib/perl5/site_perl/man/man3/Bio::MapIO::fpc.3.gz
  1220. lib/perl5/site_perl/man/man3/Bio::MapIO::mapmaker.3.gz
  1221. lib/perl5/site_perl/man/man3/Bio::Matrix::Generic.3.gz
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  1223. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::mlagan.3.gz
  1224. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::phylip.3.gz
  1225. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::scoring.3.gz
  1226. lib/perl5/site_perl/man/man3/Bio::Matrix::MatrixI.3.gz
  1227. lib/perl5/site_perl/man/man3/Bio::Matrix::Mlagan.3.gz
  1228. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO.3.gz
  1229. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::mast.3.gz
  1230. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::masta.3.gz
  1231. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::meme.3.gz
  1232. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::psiblast.3.gz
  1233. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::transfac.3.gz
  1234. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::InstanceSite.3.gz
  1235. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::InstanceSiteI.3.gz
  1236. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::ProtMatrix.3.gz
  1237. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::ProtPsm.3.gz
  1238. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::Psm.3.gz
  1239. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmHeader.3.gz
  1240. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmHeaderI.3.gz
  1241. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmI.3.gz
  1242. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::SiteMatrix.3.gz
  1243. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::SiteMatrixI.3.gz
  1244. lib/perl5/site_perl/man/man3/Bio::Matrix::PhylipDist.3.gz
  1245. lib/perl5/site_perl/man/man3/Bio::Matrix::Scoring.3.gz
  1246. lib/perl5/site_perl/man/man3/Bio::MolEvol::CodonModel.3.gz
  1247. lib/perl5/site_perl/man/man3/Bio::Nexml::Factory.3.gz
  1248. lib/perl5/site_perl/man/man3/Bio::NexmlIO.3.gz
  1249. lib/perl5/site_perl/man/man3/Bio::Ontology::DocumentRegistry.3.gz
  1250. lib/perl5/site_perl/man/man3/Bio::Ontology::GOterm.3.gz
  1251. lib/perl5/site_perl/man/man3/Bio::Ontology::InterProTerm.3.gz
  1252. lib/perl5/site_perl/man/man3/Bio::Ontology::OBOEngine.3.gz
  1253. lib/perl5/site_perl/man/man3/Bio::Ontology::OBOterm.3.gz
  1254. lib/perl5/site_perl/man/man3/Bio::Ontology::Ontology.3.gz
  1255. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyEngineI.3.gz
  1256. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyI.3.gz
  1257. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyStore.3.gz
  1258. lib/perl5/site_perl/man/man3/Bio::Ontology::Path.3.gz
  1259. lib/perl5/site_perl/man/man3/Bio::Ontology::PathI.3.gz
  1260. lib/perl5/site_perl/man/man3/Bio::Ontology::Relationship.3.gz
  1261. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipFactory.3.gz
  1262. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipI.3.gz
  1263. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipType.3.gz
  1264. lib/perl5/site_perl/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3.gz
  1265. lib/perl5/site_perl/man/man3/Bio::Ontology::SimpleOntologyEngine.3.gz
  1266. lib/perl5/site_perl/man/man3/Bio::Ontology::Term.3.gz
  1267. lib/perl5/site_perl/man/man3/Bio::Ontology::TermFactory.3.gz
  1268. lib/perl5/site_perl/man/man3/Bio::Ontology::TermI.3.gz
  1269. lib/perl5/site_perl/man/man3/Bio::OntologyIO.3.gz
  1270. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3.gz
  1271. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::InterProHandler.3.gz
  1272. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3.gz
  1273. lib/perl5/site_perl/man/man3/Bio::OntologyIO::InterProParser.3.gz
  1274. lib/perl5/site_perl/man/man3/Bio::OntologyIO::dagflat.3.gz
  1275. lib/perl5/site_perl/man/man3/Bio::OntologyIO::goflat.3.gz
  1276. lib/perl5/site_perl/man/man3/Bio::OntologyIO::obo.3.gz
  1277. lib/perl5/site_perl/man/man3/Bio::OntologyIO::simplehierarchy.3.gz
  1278. lib/perl5/site_perl/man/man3/Bio::OntologyIO::soflat.3.gz
  1279. lib/perl5/site_perl/man/man3/Bio::ParameterBaseI.3.gz
  1280. lib/perl5/site_perl/man/man3/Bio::Perl.3.gz
  1281. lib/perl5/site_perl/man/man3/Bio::Phenotype::Correlate.3.gz
  1282. lib/perl5/site_perl/man/man3/Bio::Phenotype::MeSH::Term.3.gz
  1283. lib/perl5/site_perl/man/man3/Bio::Phenotype::MeSH::Twig.3.gz
  1284. lib/perl5/site_perl/man/man3/Bio::Phenotype::Measure.3.gz
  1285. lib/perl5/site_perl/man/man3/Bio::Phenotype::OMIM::MiniMIMentry.3.gz
  1286. lib/perl5/site_perl/man/man3/Bio::Phenotype::OMIM::OMIMentry.3.gz
  1287. lib/perl5/site_perl/man/man3/Bio::Phenotype::OMIM::OMIMentryAllelicVariant.3.gz
  1288. lib/perl5/site_perl/man/man3/Bio::Phenotype::OMIM::OMIMparser.3.gz
  1289. lib/perl5/site_perl/man/man3/Bio::Phenotype::Phenotype.3.gz
  1290. lib/perl5/site_perl/man/man3/Bio::Phenotype::PhenotypeI.3.gz
  1291. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork.3.gz
  1292. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::Factory.3.gz
  1293. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::FactoryX.3.gz
  1294. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::GraphViz.3.gz
  1295. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::RandomFactory.3.gz
  1296. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::TreeFactory.3.gz
  1297. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::TreeFactoryMulti.3.gz
  1298. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::TreeFactoryX.3.gz
  1299. lib/perl5/site_perl/man/man3/Bio::PhyloNetwork::muVector.3.gz
  1300. lib/perl5/site_perl/man/man3/Bio::PopGen::Genotype.3.gz
  1301. lib/perl5/site_perl/man/man3/Bio::PopGen::GenotypeI.3.gz
  1302. lib/perl5/site_perl/man/man3/Bio::PopGen::HtSNP.3.gz
  1303. lib/perl5/site_perl/man/man3/Bio::PopGen::IO.3.gz
  1304. lib/perl5/site_perl/man/man3/Bio::PopGen::IO::csv.3.gz
  1305. lib/perl5/site_perl/man/man3/Bio::PopGen::IO::hapmap.3.gz
  1306. lib/perl5/site_perl/man/man3/Bio::PopGen::IO::phase.3.gz
  1307. lib/perl5/site_perl/man/man3/Bio::PopGen::IO::prettybase.3.gz
  1308. lib/perl5/site_perl/man/man3/Bio::PopGen::Individual.3.gz
  1309. lib/perl5/site_perl/man/man3/Bio::PopGen::IndividualI.3.gz
  1310. lib/perl5/site_perl/man/man3/Bio::PopGen::Marker.3.gz
  1311. lib/perl5/site_perl/man/man3/Bio::PopGen::MarkerI.3.gz
  1312. lib/perl5/site_perl/man/man3/Bio::PopGen::PopStats.3.gz
  1313. lib/perl5/site_perl/man/man3/Bio::PopGen::Population.3.gz
  1314. lib/perl5/site_perl/man/man3/Bio::PopGen::PopulationI.3.gz
  1315. lib/perl5/site_perl/man/man3/Bio::PopGen::Simulation::Coalescent.3.gz
  1316. lib/perl5/site_perl/man/man3/Bio::PopGen::Simulation::GeneticDrift.3.gz
  1317. lib/perl5/site_perl/man/man3/Bio::PopGen::Statistics.3.gz
  1318. lib/perl5/site_perl/man/man3/Bio::PopGen::TagHaplotype.3.gz
  1319. lib/perl5/site_perl/man/man3/Bio::PopGen::Utilities.3.gz
  1320. lib/perl5/site_perl/man/man3/Bio::PrimarySeq.3.gz
  1321. lib/perl5/site_perl/man/man3/Bio::PrimarySeqI.3.gz
  1322. lib/perl5/site_perl/man/man3/Bio::PullParserI.3.gz
  1323. lib/perl5/site_perl/man/man3/Bio::Range.3.gz
  1324. lib/perl5/site_perl/man/man3/Bio::RangeI.3.gz
  1325. lib/perl5/site_perl/man/man3/Bio::Restriction::Analysis.3.gz
  1326. lib/perl5/site_perl/man/man3/Bio::Restriction::Enzyme.3.gz
  1327. lib/perl5/site_perl/man/man3/Bio::Restriction::Enzyme::MultiCut.3.gz
  1328. lib/perl5/site_perl/man/man3/Bio::Restriction::Enzyme::MultiSite.3.gz
  1329. lib/perl5/site_perl/man/man3/Bio::Restriction::EnzymeCollection.3.gz
  1330. lib/perl5/site_perl/man/man3/Bio::Restriction::EnzymeI.3.gz
  1331. lib/perl5/site_perl/man/man3/Bio::Restriction::IO.3.gz
  1332. lib/perl5/site_perl/man/man3/Bio::Restriction::IO::bairoch.3.gz
  1333. lib/perl5/site_perl/man/man3/Bio::Restriction::IO::base.3.gz
  1334. lib/perl5/site_perl/man/man3/Bio::Restriction::IO::itype2.3.gz
  1335. lib/perl5/site_perl/man/man3/Bio::Restriction::IO::prototype.3.gz
  1336. lib/perl5/site_perl/man/man3/Bio::Restriction::IO::withrefm.3.gz
  1337. lib/perl5/site_perl/man/man3/Bio::Root::Build.3.gz
  1338. lib/perl5/site_perl/man/man3/Bio::Root::Exception.3.gz
  1339. lib/perl5/site_perl/man/man3/Bio::Root::HTTPget.3.gz
  1340. lib/perl5/site_perl/man/man3/Bio::Root::IO.3.gz
  1341. lib/perl5/site_perl/man/man3/Bio::Root::Root.3.gz
  1342. lib/perl5/site_perl/man/man3/Bio::Root::RootI.3.gz
  1343. lib/perl5/site_perl/man/man3/Bio::Root::Storable.3.gz
  1344. lib/perl5/site_perl/man/man3/Bio::Root::Test.3.gz
  1345. lib/perl5/site_perl/man/man3/Bio::Root::TestObject.3.gz
  1346. lib/perl5/site_perl/man/man3/Bio::Root::Utilities.3.gz
  1347. lib/perl5/site_perl/man/man3/Bio::Root::Version.3.gz
  1348. lib/perl5/site_perl/man/man3/Bio::Search::BlastStatistics.3.gz
  1349. lib/perl5/site_perl/man/man3/Bio::Search::BlastUtils.3.gz
  1350. lib/perl5/site_perl/man/man3/Bio::Search::DatabaseI.3.gz
  1351. lib/perl5/site_perl/man/man3/Bio::Search::GenericDatabase.3.gz
  1352. lib/perl5/site_perl/man/man3/Bio::Search::GenericStatistics.3.gz
  1353. lib/perl5/site_perl/man/man3/Bio::Search::HSP::BlastHSP.3.gz
  1354. lib/perl5/site_perl/man/man3/Bio::Search::HSP::BlastPullHSP.3.gz
  1355. lib/perl5/site_perl/man/man3/Bio::Search::HSP::FastaHSP.3.gz
  1356. lib/perl5/site_perl/man/man3/Bio::Search::HSP::GenericHSP.3.gz
  1357. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HMMERHSP.3.gz
  1358. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HSPFactory.3.gz
  1359. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HSPI.3.gz
  1360. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HmmpfamHSP.3.gz
  1361. lib/perl5/site_perl/man/man3/Bio::Search::HSP::ModelHSP.3.gz
  1362. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PSLHSP.3.gz
  1363. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PsiBlastHSP.3.gz
  1364. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PullHSPI.3.gz
  1365. lib/perl5/site_perl/man/man3/Bio::Search::HSP::WABAHSP.3.gz
  1366. lib/perl5/site_perl/man/man3/Bio::Search::Hit::BlastHit.3.gz
  1367. lib/perl5/site_perl/man/man3/Bio::Search::Hit::BlastPullHit.3.gz
  1368. lib/perl5/site_perl/man/man3/Bio::Search::Hit::Fasta.3.gz
  1369. lib/perl5/site_perl/man/man3/Bio::Search::Hit::GenericHit.3.gz
  1370. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HMMERHit.3.gz
  1371. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HitFactory.3.gz
  1372. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HitI.3.gz
  1373. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HmmpfamHit.3.gz
  1374. lib/perl5/site_perl/man/man3/Bio::Search::Hit::ModelHit.3.gz
  1375. lib/perl5/site_perl/man/man3/Bio::Search::Hit::PsiBlastHit.3.gz
  1376. lib/perl5/site_perl/man/man3/Bio::Search::Hit::PullHitI.3.gz
  1377. lib/perl5/site_perl/man/man3/Bio::Search::Hit::hmmer3Hit.3.gz
  1378. lib/perl5/site_perl/man/man3/Bio::Search::Iteration::GenericIteration.3.gz
  1379. lib/perl5/site_perl/man/man3/Bio::Search::Iteration::IterationI.3.gz
  1380. lib/perl5/site_perl/man/man3/Bio::Search::Processor.3.gz
  1381. lib/perl5/site_perl/man/man3/Bio::Search::Result::BlastPullResult.3.gz
  1382. lib/perl5/site_perl/man/man3/Bio::Search::Result::BlastResult.3.gz
  1383. lib/perl5/site_perl/man/man3/Bio::Search::Result::CrossMatchResult.3.gz
  1384. lib/perl5/site_perl/man/man3/Bio::Search::Result::GenericResult.3.gz
  1385. lib/perl5/site_perl/man/man3/Bio::Search::Result::HMMERResult.3.gz
  1386. lib/perl5/site_perl/man/man3/Bio::Search::Result::HmmpfamResult.3.gz
  1387. lib/perl5/site_perl/man/man3/Bio::Search::Result::INFERNALResult.3.gz
  1388. lib/perl5/site_perl/man/man3/Bio::Search::Result::PullResultI.3.gz
  1389. lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultFactory.3.gz
  1390. lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultI.3.gz
  1391. lib/perl5/site_perl/man/man3/Bio::Search::Result::WABAResult.3.gz
  1392. lib/perl5/site_perl/man/man3/Bio::Search::Result::hmmer3Result.3.gz
  1393. lib/perl5/site_perl/man/man3/Bio::Search::SearchUtils.3.gz
  1394. lib/perl5/site_perl/man/man3/Bio::Search::StatisticsI.3.gz
  1395. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::MapTileUtils.3.gz
  1396. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::MapTiling.3.gz
  1397. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::TilingI.3.gz
  1398. lib/perl5/site_perl/man/man3/Bio::SearchDist.3.gz
  1399. lib/perl5/site_perl/man/man3/Bio::SearchIO.3.gz
  1400. lib/perl5/site_perl/man/man3/Bio::SearchIO::EventHandlerI.3.gz
  1401. lib/perl5/site_perl/man/man3/Bio::SearchIO::FastHitEventBuilder.3.gz
  1402. lib/perl5/site_perl/man/man3/Bio::SearchIO::IteratedSearchResultEventBuilder.3.gz
  1403. lib/perl5/site_perl/man/man3/Bio::SearchIO::SearchResultEventBuilder.3.gz
  1404. lib/perl5/site_perl/man/man3/Bio::SearchIO::SearchWriterI.3.gz
  1405. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::GbrowseGFF.3.gz
  1406. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HSPTableWriter.3.gz
  1407. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HTMLResultWriter.3.gz
  1408. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HitTableWriter.3.gz
  1409. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::ResultTableWriter.3.gz
  1410. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::TextResultWriter.3.gz
  1411. lib/perl5/site_perl/man/man3/Bio::SearchIO::axt.3.gz
  1412. lib/perl5/site_perl/man/man3/Bio::SearchIO::blast.3.gz
  1413. lib/perl5/site_perl/man/man3/Bio::SearchIO::blast_pull.3.gz
  1414. lib/perl5/site_perl/man/man3/Bio::SearchIO::blasttable.3.gz
  1415. lib/perl5/site_perl/man/man3/Bio::SearchIO::cross_match.3.gz
  1416. lib/perl5/site_perl/man/man3/Bio::SearchIO::erpin.3.gz
  1417. lib/perl5/site_perl/man/man3/Bio::SearchIO::exonerate.3.gz
  1418. lib/perl5/site_perl/man/man3/Bio::SearchIO::fasta.3.gz
  1419. lib/perl5/site_perl/man/man3/Bio::SearchIO::gmap_f9.3.gz
  1420. lib/perl5/site_perl/man/man3/Bio::SearchIO::hmmer.3.gz
  1421. lib/perl5/site_perl/man/man3/Bio::SearchIO::hmmer2.3.gz
  1422. lib/perl5/site_perl/man/man3/Bio::SearchIO::hmmer3.3.gz
  1423. lib/perl5/site_perl/man/man3/Bio::SearchIO::hmmer_pull.3.gz
  1424. lib/perl5/site_perl/man/man3/Bio::SearchIO::infernal.3.gz
  1425. lib/perl5/site_perl/man/man3/Bio::SearchIO::megablast.3.gz
  1426. lib/perl5/site_perl/man/man3/Bio::SearchIO::psl.3.gz
  1427. lib/perl5/site_perl/man/man3/Bio::SearchIO::rnamotif.3.gz
  1428. lib/perl5/site_perl/man/man3/Bio::SearchIO::sim4.3.gz
  1429. lib/perl5/site_perl/man/man3/Bio::SearchIO::waba.3.gz
  1430. lib/perl5/site_perl/man/man3/Bio::SearchIO::wise.3.gz
  1431. lib/perl5/site_perl/man/man3/Bio::Seq.3.gz
  1432. lib/perl5/site_perl/man/man3/Bio::Seq::BaseSeqProcessor.3.gz
  1433. lib/perl5/site_perl/man/man3/Bio::Seq::EncodedSeq.3.gz
  1434. lib/perl5/site_perl/man/man3/Bio::Seq::LargeLocatableSeq.3.gz
  1435. lib/perl5/site_perl/man/man3/Bio::Seq::LargePrimarySeq.3.gz
  1436. lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeq.3.gz
  1437. lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeqI.3.gz
  1438. lib/perl5/site_perl/man/man3/Bio::Seq::Meta.3.gz
  1439. lib/perl5/site_perl/man/man3/Bio::Seq::Meta::Array.3.gz
  1440. lib/perl5/site_perl/man/man3/Bio::Seq::MetaI.3.gz
  1441. lib/perl5/site_perl/man/man3/Bio::Seq::PrimaryQual.3.gz
  1442. lib/perl5/site_perl/man/man3/Bio::Seq::PrimedSeq.3.gz
  1443. lib/perl5/site_perl/man/man3/Bio::Seq::QualI.3.gz
  1444. lib/perl5/site_perl/man/man3/Bio::Seq::Quality.3.gz
  1445. lib/perl5/site_perl/man/man3/Bio::Seq::RichSeq.3.gz
  1446. lib/perl5/site_perl/man/man3/Bio::Seq::RichSeqI.3.gz
  1447. lib/perl5/site_perl/man/man3/Bio::Seq::SeqBuilder.3.gz
  1448. lib/perl5/site_perl/man/man3/Bio::Seq::SeqFactory.3.gz
  1449. lib/perl5/site_perl/man/man3/Bio::Seq::SeqFastaSpeedFactory.3.gz
  1450. lib/perl5/site_perl/man/man3/Bio::Seq::SeqWithQuality.3.gz
  1451. lib/perl5/site_perl/man/man3/Bio::Seq::SequenceTrace.3.gz
  1452. lib/perl5/site_perl/man/man3/Bio::Seq::SimulatedRead.3.gz
  1453. lib/perl5/site_perl/man/man3/Bio::Seq::TraceI.3.gz
  1454. lib/perl5/site_perl/man/man3/Bio::SeqAnalysisParserI.3.gz
  1455. lib/perl5/site_perl/man/man3/Bio::SeqEvolution::DNAPoint.3.gz
  1456. lib/perl5/site_perl/man/man3/Bio::SeqEvolution::EvolutionI.3.gz
  1457. lib/perl5/site_perl/man/man3/Bio::SeqEvolution::Factory.3.gz
  1458. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Amplicon.3.gz
  1459. lib/perl5/site_perl/man/man3/Bio::SeqFeature::AnnotationAdaptor.3.gz
  1460. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Collection.3.gz
  1461. lib/perl5/site_perl/man/man3/Bio::SeqFeature::CollectionI.3.gz
  1462. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Computation.3.gz
  1463. lib/perl5/site_perl/man/man3/Bio::SeqFeature::FeaturePair.3.gz
  1464. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Exon.3.gz
  1465. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::ExonI.3.gz
  1466. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::GeneStructure.3.gz
  1467. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::GeneStructureI.3.gz
  1468. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Intron.3.gz
  1469. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::NC_Feature.3.gz
  1470. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Poly_A_site.3.gz
  1471. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Promoter.3.gz
  1472. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Transcript.3.gz
  1473. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::TranscriptI.3.gz
  1474. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::UTR.3.gz
  1475. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Generic.3.gz
  1476. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Lite.3.gz
  1477. lib/perl5/site_perl/man/man3/Bio::SeqFeature::PositionProxy.3.gz
  1478. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Primer.3.gz
  1479. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SiRNA::Oligo.3.gz
  1480. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SiRNA::Pair.3.gz
  1481. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Similarity.3.gz
  1482. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SimilarityPair.3.gz
  1483. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SubSeq.3.gz
  1484. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::FeatureNamer.3.gz
  1485. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::IDHandler.3.gz
  1486. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::TypeMapper.3.gz
  1487. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::Unflattener.3.gz
  1488. lib/perl5/site_perl/man/man3/Bio::SeqFeature::TypedSeqFeatureI.3.gz
  1489. lib/perl5/site_perl/man/man3/Bio::SeqFeatureI.3.gz
  1490. lib/perl5/site_perl/man/man3/Bio::SeqI.3.gz
  1491. lib/perl5/site_perl/man/man3/Bio::SeqIO.3.gz
  1492. lib/perl5/site_perl/man/man3/Bio::SeqIO::FTHelper.3.gz
  1493. lib/perl5/site_perl/man/man3/Bio::SeqIO::Handler::GenericRichSeqHandler.3.gz
  1494. lib/perl5/site_perl/man/man3/Bio::SeqIO::MultiFile.3.gz
  1495. lib/perl5/site_perl/man/man3/Bio::SeqIO::abi.3.gz
  1496. lib/perl5/site_perl/man/man3/Bio::SeqIO::ace.3.gz
  1497. lib/perl5/site_perl/man/man3/Bio::SeqIO::agave.3.gz
  1498. lib/perl5/site_perl/man/man3/Bio::SeqIO::alf.3.gz
  1499. lib/perl5/site_perl/man/man3/Bio::SeqIO::asciitree.3.gz
  1500. lib/perl5/site_perl/man/man3/Bio::SeqIO::bsml.3.gz
  1501. lib/perl5/site_perl/man/man3/Bio::SeqIO::bsml_sax.3.gz
  1502. lib/perl5/site_perl/man/man3/Bio::SeqIO::chadoxml.3.gz
  1503. lib/perl5/site_perl/man/man3/Bio::SeqIO::chaos.3.gz
  1504. lib/perl5/site_perl/man/man3/Bio::SeqIO::chaosxml.3.gz
  1505. lib/perl5/site_perl/man/man3/Bio::SeqIO::ctf.3.gz
  1506. lib/perl5/site_perl/man/man3/Bio::SeqIO::embl.3.gz
  1507. lib/perl5/site_perl/man/man3/Bio::SeqIO::embldriver.3.gz
  1508. lib/perl5/site_perl/man/man3/Bio::SeqIO::entrezgene.3.gz
  1509. lib/perl5/site_perl/man/man3/Bio::SeqIO::excel.3.gz
  1510. lib/perl5/site_perl/man/man3/Bio::SeqIO::exp.3.gz
  1511. lib/perl5/site_perl/man/man3/Bio::SeqIO::fasta.3.gz
  1512. lib/perl5/site_perl/man/man3/Bio::SeqIO::fastq.3.gz
  1513. lib/perl5/site_perl/man/man3/Bio::SeqIO::flybase_chadoxml.3.gz
  1514. lib/perl5/site_perl/man/man3/Bio::SeqIO::game.3.gz
  1515. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::featHandler.3.gz
  1516. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameHandler.3.gz
  1517. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameSubs.3.gz
  1518. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameWriter.3.gz
  1519. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::seqHandler.3.gz
  1520. lib/perl5/site_perl/man/man3/Bio::SeqIO::gbdriver.3.gz
  1521. lib/perl5/site_perl/man/man3/Bio::SeqIO::gbxml.3.gz
  1522. lib/perl5/site_perl/man/man3/Bio::SeqIO::gcg.3.gz
  1523. lib/perl5/site_perl/man/man3/Bio::SeqIO::genbank.3.gz
  1524. lib/perl5/site_perl/man/man3/Bio::SeqIO::interpro.3.gz
  1525. lib/perl5/site_perl/man/man3/Bio::SeqIO::kegg.3.gz
  1526. lib/perl5/site_perl/man/man3/Bio::SeqIO::largefasta.3.gz
  1527. lib/perl5/site_perl/man/man3/Bio::SeqIO::lasergene.3.gz
  1528. lib/perl5/site_perl/man/man3/Bio::SeqIO::locuslink.3.gz
  1529. lib/perl5/site_perl/man/man3/Bio::SeqIO::mbsout.3.gz
  1530. lib/perl5/site_perl/man/man3/Bio::SeqIO::metafasta.3.gz
  1531. lib/perl5/site_perl/man/man3/Bio::SeqIO::msout.3.gz
  1532. lib/perl5/site_perl/man/man3/Bio::SeqIO::nexml.3.gz
  1533. lib/perl5/site_perl/man/man3/Bio::SeqIO::phd.3.gz
  1534. lib/perl5/site_perl/man/man3/Bio::SeqIO::pir.3.gz
  1535. lib/perl5/site_perl/man/man3/Bio::SeqIO::pln.3.gz
  1536. lib/perl5/site_perl/man/man3/Bio::SeqIO::qual.3.gz
  1537. lib/perl5/site_perl/man/man3/Bio::SeqIO::raw.3.gz
  1538. lib/perl5/site_perl/man/man3/Bio::SeqIO::scf.3.gz
  1539. lib/perl5/site_perl/man/man3/Bio::SeqIO::seqxml.3.gz
  1540. lib/perl5/site_perl/man/man3/Bio::SeqIO::strider.3.gz
  1541. lib/perl5/site_perl/man/man3/Bio::SeqIO::swiss.3.gz
  1542. lib/perl5/site_perl/man/man3/Bio::SeqIO::swissdriver.3.gz
  1543. lib/perl5/site_perl/man/man3/Bio::SeqIO::tab.3.gz
  1544. lib/perl5/site_perl/man/man3/Bio::SeqIO::table.3.gz
  1545. lib/perl5/site_perl/man/man3/Bio::SeqIO::tigr.3.gz
  1546. lib/perl5/site_perl/man/man3/Bio::SeqIO::tigrxml.3.gz
  1547. lib/perl5/site_perl/man/man3/Bio::SeqIO::tinyseq.3.gz
  1548. lib/perl5/site_perl/man/man3/Bio::SeqIO::tinyseq::tinyseqHandler.3.gz
  1549. lib/perl5/site_perl/man/man3/Bio::SeqIO::ztr.3.gz
  1550. lib/perl5/site_perl/man/man3/Bio::SeqUtils.3.gz
  1551. lib/perl5/site_perl/man/man3/Bio::SimpleAlign.3.gz
  1552. lib/perl5/site_perl/man/man3/Bio::SimpleAnalysisI.3.gz
  1553. lib/perl5/site_perl/man/man3/Bio::Species.3.gz
  1554. lib/perl5/site_perl/man/man3/Bio::Structure::Atom.3.gz
  1555. lib/perl5/site_perl/man/man3/Bio::Structure::Chain.3.gz
  1556. lib/perl5/site_perl/man/man3/Bio::Structure::Entry.3.gz
  1557. lib/perl5/site_perl/man/man3/Bio::Structure::IO.3.gz
  1558. lib/perl5/site_perl/man/man3/Bio::Structure::IO::pdb.3.gz
  1559. lib/perl5/site_perl/man/man3/Bio::Structure::Model.3.gz
  1560. lib/perl5/site_perl/man/man3/Bio::Structure::Residue.3.gz
  1561. lib/perl5/site_perl/man/man3/Bio::Structure::SecStr::DSSP::Res.3.gz
  1562. lib/perl5/site_perl/man/man3/Bio::Structure::SecStr::STRIDE::Res.3.gz
  1563. lib/perl5/site_perl/man/man3/Bio::Structure::StructureI.3.gz
  1564. lib/perl5/site_perl/man/man3/Bio::Symbol::Alphabet.3.gz
  1565. lib/perl5/site_perl/man/man3/Bio::Symbol::AlphabetI.3.gz
  1566. lib/perl5/site_perl/man/man3/Bio::Symbol::DNAAlphabet.3.gz
  1567. lib/perl5/site_perl/man/man3/Bio::Symbol::ProteinAlphabet.3.gz
  1568. lib/perl5/site_perl/man/man3/Bio::Symbol::Symbol.3.gz
  1569. lib/perl5/site_perl/man/man3/Bio::Symbol::SymbolI.3.gz
  1570. lib/perl5/site_perl/man/man3/Bio::Taxon.3.gz
  1571. lib/perl5/site_perl/man/man3/Bio::Taxonomy.3.gz
  1572. lib/perl5/site_perl/man/man3/Bio::Taxonomy::FactoryI.3.gz
  1573. lib/perl5/site_perl/man/man3/Bio::Taxonomy::Node.3.gz
  1574. lib/perl5/site_perl/man/man3/Bio::Taxonomy::Taxon.3.gz
  1575. lib/perl5/site_perl/man/man3/Bio::Taxonomy::Tree.3.gz
  1576. lib/perl5/site_perl/man/man3/Bio::Tools::AlignFactory.3.gz
  1577. lib/perl5/site_perl/man/man3/Bio::Tools::Alignment::Consed.3.gz
  1578. lib/perl5/site_perl/man/man3/Bio::Tools::Alignment::Trim.3.gz
  1579. lib/perl5/site_perl/man/man3/Bio::Tools::AmpliconSearch.3.gz
  1580. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::DNA::ESEfinder.3.gz
  1581. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::Protein::Domcut.3.gz
  1582. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::Protein::ELM.3.gz
  1583. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::Protein::GOR4.3.gz
  1584. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::Protein::HNN.3.gz
  1585. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::Protein::NetPhos.3.gz
  1586. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::Protein::Scansite.3.gz
  1587. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::Protein::Sopma.3.gz
  1588. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::SimpleAnalysisBase.3.gz
  1589. lib/perl5/site_perl/man/man3/Bio::Tools::AnalysisResult.3.gz
  1590. lib/perl5/site_perl/man/man3/Bio::Tools::Blat.3.gz
  1591. lib/perl5/site_perl/man/man3/Bio::Tools::CodonTable.3.gz
  1592. lib/perl5/site_perl/man/man3/Bio::Tools::Coil.3.gz
  1593. lib/perl5/site_perl/man/man3/Bio::Tools::ECnumber.3.gz
  1594. lib/perl5/site_perl/man/man3/Bio::Tools::EMBOSS::Palindrome.3.gz
  1595. lib/perl5/site_perl/man/man3/Bio::Tools::EPCR.3.gz
  1596. lib/perl5/site_perl/man/man3/Bio::Tools::ESTScan.3.gz
  1597. lib/perl5/site_perl/man/man3/Bio::Tools::Eponine.3.gz
  1598. lib/perl5/site_perl/man/man3/Bio::Tools::Est2Genome.3.gz
  1599. lib/perl5/site_perl/man/man3/Bio::Tools::Fgenesh.3.gz
  1600. lib/perl5/site_perl/man/man3/Bio::Tools::FootPrinter.3.gz
  1601. lib/perl5/site_perl/man/man3/Bio::Tools::GFF.3.gz
  1602. lib/perl5/site_perl/man/man3/Bio::Tools::Gel.3.gz
  1603. lib/perl5/site_perl/man/man3/Bio::Tools::Geneid.3.gz
  1604. lib/perl5/site_perl/man/man3/Bio::Tools::Genemark.3.gz
  1605. lib/perl5/site_perl/man/man3/Bio::Tools::Genewise.3.gz
  1606. lib/perl5/site_perl/man/man3/Bio::Tools::Genomewise.3.gz
  1607. lib/perl5/site_perl/man/man3/Bio::Tools::Genscan.3.gz
  1608. lib/perl5/site_perl/man/man3/Bio::Tools::Glimmer.3.gz
  1609. lib/perl5/site_perl/man/man3/Bio::Tools::Grail.3.gz
  1610. lib/perl5/site_perl/man/man3/Bio::Tools::GuessSeqFormat.3.gz
  1611. lib/perl5/site_perl/man/man3/Bio::Tools::HMMER::Domain.3.gz
  1612. lib/perl5/site_perl/man/man3/Bio::Tools::HMMER::Results.3.gz
  1613. lib/perl5/site_perl/man/man3/Bio::Tools::HMMER::Set.3.gz
  1614. lib/perl5/site_perl/man/man3/Bio::Tools::Hmmpfam.3.gz
  1615. lib/perl5/site_perl/man/man3/Bio::Tools::IUPAC.3.gz
  1616. lib/perl5/site_perl/man/man3/Bio::Tools::Lucy.3.gz
  1617. lib/perl5/site_perl/man/man3/Bio::Tools::MZEF.3.gz
  1618. lib/perl5/site_perl/man/man3/Bio::Tools::Match.3.gz
  1619. lib/perl5/site_perl/man/man3/Bio::Tools::OddCodes.3.gz
  1620. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Gerp.3.gz
  1621. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Gumby.3.gz
  1622. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Molphy.3.gz
  1623. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Molphy::Result.3.gz
  1624. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Phylip::ProtDist.3.gz
  1625. lib/perl5/site_perl/man/man3/Bio::Tools::Prediction::Exon.3.gz
  1626. lib/perl5/site_perl/man/man3/Bio::Tools::Prediction::Gene.3.gz
  1627. lib/perl5/site_perl/man/man3/Bio::Tools::Primer3.3.gz
  1628. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Assessor::Base.3.gz
  1629. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::AssessorI.3.gz
  1630. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Feature.3.gz
  1631. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Pair.3.gz
  1632. lib/perl5/site_perl/man/man3/Bio::Tools::Prints.3.gz
  1633. lib/perl5/site_perl/man/man3/Bio::Tools::Profile.3.gz
  1634. lib/perl5/site_perl/man/man3/Bio::Tools::Promoterwise.3.gz
  1635. lib/perl5/site_perl/man/man3/Bio::Tools::PrositeScan.3.gz
  1636. lib/perl5/site_perl/man/man3/Bio::Tools::Protparam.3.gz
  1637. lib/perl5/site_perl/man/man3/Bio::Tools::Pseudowise.3.gz
  1638. lib/perl5/site_perl/man/man3/Bio::Tools::QRNA.3.gz
  1639. lib/perl5/site_perl/man/man3/Bio::Tools::RandomDistFunctions.3.gz
  1640. lib/perl5/site_perl/man/man3/Bio::Tools::RepeatMasker.3.gz
  1641. lib/perl5/site_perl/man/man3/Bio::Tools::Run::GenericParameters.3.gz
  1642. lib/perl5/site_perl/man/man3/Bio::Tools::Run::ParametersI.3.gz
  1643. lib/perl5/site_perl/man/man3/Bio::Tools::Run::RemoteBlast.3.gz
  1644. lib/perl5/site_perl/man/man3/Bio::Tools::Seg.3.gz
  1645. lib/perl5/site_perl/man/man3/Bio::Tools::SeqPattern.3.gz
  1646. lib/perl5/site_perl/man/man3/Bio::Tools::SeqPattern::Backtranslate.3.gz
  1647. lib/perl5/site_perl/man/man3/Bio::Tools::SeqStats.3.gz
  1648. lib/perl5/site_perl/man/man3/Bio::Tools::SeqWords.3.gz
  1649. lib/perl5/site_perl/man/man3/Bio::Tools::SiRNA.3.gz
  1650. lib/perl5/site_perl/man/man3/Bio::Tools::SiRNA::Ruleset::saigo.3.gz
  1651. lib/perl5/site_perl/man/man3/Bio::Tools::SiRNA::Ruleset::tuschl.3.gz
  1652. lib/perl5/site_perl/man/man3/Bio::Tools::Sigcleave.3.gz
  1653. lib/perl5/site_perl/man/man3/Bio::Tools::Signalp.3.gz
  1654. lib/perl5/site_perl/man/man3/Bio::Tools::Signalp::ExtendedSignalp.3.gz
  1655. lib/perl5/site_perl/man/man3/Bio::Tools::Sim4::Exon.3.gz
  1656. lib/perl5/site_perl/man/man3/Bio::Tools::Sim4::Results.3.gz
  1657. lib/perl5/site_perl/man/man3/Bio::Tools::Spidey::Exon.3.gz
  1658. lib/perl5/site_perl/man/man3/Bio::Tools::Spidey::Results.3.gz
  1659. lib/perl5/site_perl/man/man3/Bio::Tools::TandemRepeatsFinder.3.gz
  1660. lib/perl5/site_perl/man/man3/Bio::Tools::TargetP.3.gz
  1661. lib/perl5/site_perl/man/man3/Bio::Tools::Tmhmm.3.gz
  1662. lib/perl5/site_perl/man/man3/Bio::Tools::dpAlign.3.gz
  1663. lib/perl5/site_perl/man/man3/Bio::Tools::ipcress.3.gz
  1664. lib/perl5/site_perl/man/man3/Bio::Tools::isPcr.3.gz
  1665. lib/perl5/site_perl/man/man3/Bio::Tools::pICalculator.3.gz
  1666. lib/perl5/site_perl/man/man3/Bio::Tools::pSW.3.gz
  1667. lib/perl5/site_perl/man/man3/Bio::Tools::tRNAscanSE.3.gz
  1668. lib/perl5/site_perl/man/man3/Bio::Tree::AlleleNode.3.gz
  1669. lib/perl5/site_perl/man/man3/Bio::Tree::AnnotatableNode.3.gz
  1670. lib/perl5/site_perl/man/man3/Bio::Tree::Compatible.3.gz
  1671. lib/perl5/site_perl/man/man3/Bio::Tree::DistanceFactory.3.gz
  1672. lib/perl5/site_perl/man/man3/Bio::Tree::Draw::Cladogram.3.gz
  1673. lib/perl5/site_perl/man/man3/Bio::Tree::Node.3.gz
  1674. lib/perl5/site_perl/man/man3/Bio::Tree::NodeI.3.gz
  1675. lib/perl5/site_perl/man/man3/Bio::Tree::NodeNHX.3.gz
  1676. lib/perl5/site_perl/man/man3/Bio::Tree::RandomFactory.3.gz
  1677. lib/perl5/site_perl/man/man3/Bio::Tree::Statistics.3.gz
  1678. lib/perl5/site_perl/man/man3/Bio::Tree::Tree.3.gz
  1679. lib/perl5/site_perl/man/man3/Bio::Tree::TreeFunctionsI.3.gz
  1680. lib/perl5/site_perl/man/man3/Bio::Tree::TreeI.3.gz
  1681. lib/perl5/site_perl/man/man3/Bio::TreeIO.3.gz
  1682. lib/perl5/site_perl/man/man3/Bio::TreeIO::NewickParser.3.gz
  1683. lib/perl5/site_perl/man/man3/Bio::TreeIO::TreeEventBuilder.3.gz
  1684. lib/perl5/site_perl/man/man3/Bio::TreeIO::cluster.3.gz
  1685. lib/perl5/site_perl/man/man3/Bio::TreeIO::lintree.3.gz
  1686. lib/perl5/site_perl/man/man3/Bio::TreeIO::newick.3.gz
  1687. lib/perl5/site_perl/man/man3/Bio::TreeIO::nexml.3.gz
  1688. lib/perl5/site_perl/man/man3/Bio::TreeIO::nexus.3.gz
  1689. lib/perl5/site_perl/man/man3/Bio::TreeIO::nhx.3.gz
  1690. lib/perl5/site_perl/man/man3/Bio::TreeIO::pag.3.gz
  1691. lib/perl5/site_perl/man/man3/Bio::TreeIO::phyloxml.3.gz
  1692. lib/perl5/site_perl/man/man3/Bio::TreeIO::svggraph.3.gz
  1693. lib/perl5/site_perl/man/man3/Bio::TreeIO::tabtree.3.gz
  1694. lib/perl5/site_perl/man/man3/Bio::UpdateableSeqI.3.gz
  1695. lib/perl5/site_perl/man/man3/Bio::Variation::AAChange.3.gz
  1696. lib/perl5/site_perl/man/man3/Bio::Variation::AAReverseMutate.3.gz
  1697. lib/perl5/site_perl/man/man3/Bio::Variation::Allele.3.gz
  1698. lib/perl5/site_perl/man/man3/Bio::Variation::DNAMutation.3.gz
  1699. lib/perl5/site_perl/man/man3/Bio::Variation::IO.3.gz
  1700. lib/perl5/site_perl/man/man3/Bio::Variation::IO::flat.3.gz
  1701. lib/perl5/site_perl/man/man3/Bio::Variation::IO::xml.3.gz
  1702. lib/perl5/site_perl/man/man3/Bio::Variation::RNAChange.3.gz
  1703. lib/perl5/site_perl/man/man3/Bio::Variation::SNP.3.gz
  1704. lib/perl5/site_perl/man/man3/Bio::Variation::SeqDiff.3.gz
  1705. lib/perl5/site_perl/man/man3/Bio::Variation::VariantI.3.gz
  1706. lib/perl5/site_perl/man/man3/Bio::WebAgent.3.gz
  1707. Collapse this list.

To install the port: cd /usr/ports/biology/p5-BioPerl/ && make install clean
To add the package: pkg install p5-BioPerl

PKGNAME: p5-BioPerl

distinfo:

TIMESTAMP = 1505232617
SHA256 (BioPerl-1.007002.tar.gz) = 17aa3aaab2f381bbcaffdc370002eaf28f2c341b538068d6586b2276a76464a1
SIZE (BioPerl-1.007002.tar.gz) = 12362741


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. p5-Algorithm-Munkres>=0 : math/p5-Algorithm-Munkres
  2. p5-Array-Compare>=0 : misc/p5-Array-Compare
  3. p5-CGI>=0 : www/p5-CGI
  4. p5-Clone>=0 : devel/p5-Clone
  5. p5-Convert-Binary-C>=0 : converters/p5-Convert-Binary-C
  6. p5-DBD-mysql>=0 : databases/p5-DBD-mysql
  7. p5-DBI>=0 : databases/p5-DBI
  8. p5-Data-Stag>=0.11 : devel/p5-Data-Stag
  9. p5-Error>=0 : lang/p5-Error
  10. p5-GD>=0 : graphics/p5-GD
  11. p5-Graph>=0.50 : math/p5-Graph
  12. p5-GraphViz>=0 : graphics/p5-GraphViz
  13. p5-HTML-Parser>=3 : www/p5-HTML-Parser
  14. p5-HTML-TableExtract>=0 : www/p5-HTML-TableExtract
  15. p5-HTTP-Message>=0 : www/p5-HTTP-Message
  16. p5-IO-String>=0 : devel/p5-IO-String
  17. p5-IO-stringy>=0 : devel/p5-IO-stringy
  18. p5-Inline-C>=0.67 : devel/p5-Inline-C
  19. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  20. p5-PostScript>=0 : print/p5-PostScript
  21. p5-SVG>=2.26 : textproc/p5-SVG
  22. p5-SVG-Graph>=0.01 : graphics/p5-SVG-Graph
  23. p5-Set-Scalar>=0 : devel/p5-Set-Scalar
  24. p5-Sort-Naturally>=0 : textproc/p5-Sort-Naturally
  25. p5-Spreadsheet-ParseExcel>=0 : textproc/p5-Spreadsheet-ParseExcel
  26. p5-XML-DOM>=0 : textproc/p5-XML-DOM
  27. p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
  28. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  29. p5-XML-Parser>=0 : textproc/p5-XML-Parser
  30. p5-XML-SAX>=0.15 : textproc/p5-XML-SAX
  31. p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
  32. p5-XML-Simple>=0 : textproc/p5-XML-Simple
  33. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  34. p5-XML-Writer>=0.400 : textproc/p5-XML-Writer
  35. p5-YAML>=0 : textproc/p5-YAML
  36. p5-libwww>=0 : www/p5-libwww
  37. p5-libxml>=0 : textproc/p5-libxml
  38. p5-Module-Build>=0.4206 : devel/p5-Module-Build
  39. perl5>=5.24<5.25 : lang/perl5.24
Runtime dependencies:
  1. p5-Algorithm-Munkres>=0 : math/p5-Algorithm-Munkres
  2. p5-Array-Compare>=0 : misc/p5-Array-Compare
  3. p5-CGI>=0 : www/p5-CGI
  4. p5-Clone>=0 : devel/p5-Clone
  5. p5-Convert-Binary-C>=0 : converters/p5-Convert-Binary-C
  6. p5-DBD-mysql>=0 : databases/p5-DBD-mysql
  7. p5-DBI>=0 : databases/p5-DBI
  8. p5-Data-Stag>=0.11 : devel/p5-Data-Stag
  9. p5-Error>=0 : lang/p5-Error
  10. p5-GD>=0 : graphics/p5-GD
  11. p5-Graph>=0.50 : math/p5-Graph
  12. p5-GraphViz>=0 : graphics/p5-GraphViz
  13. p5-HTML-Parser>=3 : www/p5-HTML-Parser
  14. p5-HTML-TableExtract>=0 : www/p5-HTML-TableExtract
  15. p5-HTTP-Message>=0 : www/p5-HTTP-Message
  16. p5-IO-String>=0 : devel/p5-IO-String
  17. p5-IO-stringy>=0 : devel/p5-IO-stringy
  18. p5-Inline-C>=0.67 : devel/p5-Inline-C
  19. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  20. p5-PostScript>=0 : print/p5-PostScript
  21. p5-SVG>=2.26 : textproc/p5-SVG
  22. p5-SVG-Graph>=0.01 : graphics/p5-SVG-Graph
  23. p5-Set-Scalar>=0 : devel/p5-Set-Scalar
  24. p5-Sort-Naturally>=0 : textproc/p5-Sort-Naturally
  25. p5-Spreadsheet-ParseExcel>=0 : textproc/p5-Spreadsheet-ParseExcel
  26. p5-XML-DOM>=0 : textproc/p5-XML-DOM
  27. p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
  28. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  29. p5-XML-Parser>=0 : textproc/p5-XML-Parser
  30. p5-XML-SAX>=0.15 : textproc/p5-XML-SAX
  31. p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
  32. p5-XML-Simple>=0 : textproc/p5-XML-Simple
  33. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  34. p5-XML-Writer>=0.400 : textproc/p5-XML-Writer
  35. p5-YAML>=0 : textproc/p5-YAML
  36. p5-libwww>=0 : www/p5-libwww
  37. p5-libxml>=0 : textproc/p5-libxml
  38. perl5>=5.24<5.25 : lang/perl5.24

This port is required by:

for Build for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options
===> The following configuration options are available for p5-BioPerl-1.007002:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
     PGTEST=off: Test PostGreSQL
     SQLITETEST=off: Test SQLite
===> Use 'make config' to modify these settings

USES:
perl5 shebangfix

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  2. ftp://ftp.cpan.org/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/BioPerl/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/authors/id/C/CJ/CJFIELDS/
  7. http://backpan.perl.org/authors/id/C/CJ/CJFIELDS/
  8. http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/
  9. http://cpan.metacpan.org/modules/by-module/BioPerl/
  10. http://ftp.jaist.ac.jp/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  11. http://ftp.twaren.net/Unix/Lang/CPAN/authors/id/C/CJ/CJFIELDS/
  12. http://www.cpan.dk/authors/id/C/CJ/CJFIELDS/
  13. http://www.cpan.org/authors/id/C/CJ/CJFIELDS/
Port Moves
  • port moved here from biology/p5-bioperl on 2016-12-18
    REASON: Rename to match upstream naming

Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
15 Sep 2017 08:58:50
Original commit files touched by this commit  1.007002
Revision:449893
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
13 Sep 2017 01:45:35
Original commit files touched by this commit  1.007002
Revision:449746
wen search for other commits by this committer
- Update to 1.007002
Changes: http://search.cpan.org/src/CJFIELDS/BioPerl-1.007002/Changes
01 Jun 2017 23:50:33
Original commit files touched by this commit  1.007001_2
Revision:442335
sunpoet search for other commits by this committer
Remove outdated PERL_LEVEL check
22 Apr 2017 12:45:43
Original commit files touched by this commit  1.007001_2
Revision:439170
miwi search for other commits by this committer
- Fix shebangs
31 Jan 2017 16:21:46
Original commit files touched by this commit  1.007001_1
Revision:432932
mat search for other commits by this committer
Bump PORTREVISION for ports affected by the fix the last commit.

Done with:	Tools/scripts/bump-revision.sh
Sponsored by:	Absolight
19 Dec 2016 15:54:29
Original commit files touched by this commit  1.007001
Revision:428940
sunpoet search for other commits by this committer
- Update to 1.007001
- Update *_DEPENDS
- Use TEST_DEPENDS: Test::Most and URI::Escape are test-only dependencies
- Use PORTDATA, PORTDOCS and PORTEXAMPLES

Changes:	http://search.cpan.org/dist/BioPerl/Changes
18 Dec 2016 15:25:04
Original commit files touched by this commit  1.6.924_5
Revision:428868
sunpoet search for other commits by this committer
- Move biology/p5-bioperl to biology/p5-BioPerl
- Sort *_DEPENDS
- Bump PORTREVISION for dependent ports

Number of commits found: 7

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