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Two new features

Two new features were added on 2020-05-30:
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Port details
p5-BioPerl Collection of Perl modules for bioinformatics
1.007007_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. 1.007007_1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-12-18 15:27:08
Last Update: 2020-06-26 12:55:23
SVN Revision: 540492
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (1082 items)
  1. /usr/local/share/licenses/p5-BioPerl-1.007007_1/catalog.mk
  2. /usr/local/share/licenses/p5-BioPerl-1.007007_1/LICENSE
  3. /usr/local/share/licenses/p5-BioPerl-1.007007_1/ART10
  4. /usr/local/share/licenses/p5-BioPerl-1.007007_1/GPLv1+
  5. bin/bp_aacomp
  6. bin/bp_bioflat_index
  7. bin/bp_biogetseq
  8. bin/bp_dbsplit
  9. bin/bp_extract_feature_seq
  10. bin/bp_fastam9_to_table
  11. bin/bp_fetch
  12. bin/bp_filter_search
  13. bin/bp_find-blast-matches
  14. bin/bp_gccalc
  15. bin/bp_genbank2gff3
  16. bin/bp_index
  17. bin/bp_local_taxonomydb_query
  18. bin/bp_make_mrna_protein
  19. bin/bp_mask_by_search
  20. bin/bp_mrtrans
  21. bin/bp_mutate
  22. bin/bp_nexus2nh
  23. bin/bp_nrdb
  24. bin/bp_oligo_count
  25. bin/bp_process_gadfly
  26. bin/bp_process_sgd
  27. bin/bp_revtrans-motif
  28. bin/bp_search2alnblocks
  29. bin/bp_search2gff
  30. bin/bp_search2table
  31. bin/bp_search2tribe
  32. bin/bp_seq_length
  33. bin/bp_seqconvert
  34. bin/bp_seqcut
  35. bin/bp_seqpart
  36. bin/bp_seqret
  37. bin/bp_seqretsplit
  38. bin/bp_split_seq
  39. bin/bp_sreformat
  40. bin/bp_taxid4species
  41. bin/bp_taxonomy2tree
  42. bin/bp_translate_seq
  43. bin/bp_tree2pag
  44. bin/bp_unflatten_seq
  45. lib/perl5/site_perl/Bio/Align/AlignI.pm
  46. lib/perl5/site_perl/Bio/Align/DNAStatistics.pm
  47. lib/perl5/site_perl/Bio/Align/PairwiseStatistics.pm
  48. lib/perl5/site_perl/Bio/Align/ProteinStatistics.pm
  49. lib/perl5/site_perl/Bio/Align/StatisticsI.pm
  50. lib/perl5/site_perl/Bio/Align/Utilities.pm
  51. lib/perl5/site_perl/Bio/AlignIO.pm
  52. lib/perl5/site_perl/Bio/AlignIO/Handler/GenericAlignHandler.pm
  53. lib/perl5/site_perl/Bio/AlignIO/arp.pm
  54. lib/perl5/site_perl/Bio/AlignIO/bl2seq.pm
  55. lib/perl5/site_perl/Bio/AlignIO/clustalw.pm
  56. lib/perl5/site_perl/Bio/AlignIO/emboss.pm
  57. lib/perl5/site_perl/Bio/AlignIO/fasta.pm
  58. lib/perl5/site_perl/Bio/AlignIO/largemultifasta.pm
  59. lib/perl5/site_perl/Bio/AlignIO/maf.pm
  60. lib/perl5/site_perl/Bio/AlignIO/mase.pm
  61. lib/perl5/site_perl/Bio/AlignIO/mega.pm
  62. lib/perl5/site_perl/Bio/AlignIO/meme.pm
  63. lib/perl5/site_perl/Bio/AlignIO/metafasta.pm
  64. lib/perl5/site_perl/Bio/AlignIO/msf.pm
  65. lib/perl5/site_perl/Bio/AlignIO/nexus.pm
  66. lib/perl5/site_perl/Bio/AlignIO/pfam.pm
  67. lib/perl5/site_perl/Bio/AlignIO/phylip.pm
  68. lib/perl5/site_perl/Bio/AlignIO/po.pm
  69. lib/perl5/site_perl/Bio/AlignIO/proda.pm
  70. lib/perl5/site_perl/Bio/AlignIO/prodom.pm
  71. lib/perl5/site_perl/Bio/AlignIO/psi.pm
  72. lib/perl5/site_perl/Bio/AlignIO/selex.pm
  73. lib/perl5/site_perl/Bio/AlignIO/xmfa.pm
  74. lib/perl5/site_perl/Bio/AnalysisI.pm
  75. lib/perl5/site_perl/Bio/AnalysisParserI.pm
  76. lib/perl5/site_perl/Bio/AnalysisResultI.pm
  77. lib/perl5/site_perl/Bio/AnnotatableI.pm
  78. lib/perl5/site_perl/Bio/Annotation/AnnotationFactory.pm
  79. lib/perl5/site_perl/Bio/Annotation/Collection.pm
  80. lib/perl5/site_perl/Bio/Annotation/Comment.pm
  81. lib/perl5/site_perl/Bio/Annotation/DBLink.pm
  82. lib/perl5/site_perl/Bio/Annotation/OntologyTerm.pm
  83. lib/perl5/site_perl/Bio/Annotation/Reference.pm
  84. lib/perl5/site_perl/Bio/Annotation/Relation.pm
  85. lib/perl5/site_perl/Bio/Annotation/SimpleValue.pm
  86. lib/perl5/site_perl/Bio/Annotation/StructuredValue.pm
  87. lib/perl5/site_perl/Bio/Annotation/TagTree.pm
  88. lib/perl5/site_perl/Bio/Annotation/Target.pm
  89. lib/perl5/site_perl/Bio/Annotation/Tree.pm
  90. lib/perl5/site_perl/Bio/Annotation/TypeManager.pm
  91. lib/perl5/site_perl/Bio/AnnotationCollectionI.pm
  92. lib/perl5/site_perl/Bio/AnnotationI.pm
  93. lib/perl5/site_perl/Bio/CodonUsage/IO.pm
  94. lib/perl5/site_perl/Bio/CodonUsage/Table.pm
  95. lib/perl5/site_perl/Bio/DB/DBFetch.pm
  96. lib/perl5/site_perl/Bio/DB/Failover.pm
  97. lib/perl5/site_perl/Bio/DB/Fasta.pm
  98. lib/perl5/site_perl/Bio/DB/FileCache.pm
  99. lib/perl5/site_perl/Bio/DB/Flat.pm
  100. lib/perl5/site_perl/Bio/DB/Flat/BDB.pm
  101. lib/perl5/site_perl/Bio/DB/Flat/BDB/embl.pm
  102. lib/perl5/site_perl/Bio/DB/Flat/BDB/fasta.pm
  103. lib/perl5/site_perl/Bio/DB/Flat/BDB/genbank.pm
  104. lib/perl5/site_perl/Bio/DB/Flat/BDB/swiss.pm
  105. lib/perl5/site_perl/Bio/DB/Flat/BinarySearch.pm
  106. lib/perl5/site_perl/Bio/DB/GFF/Util/Binning.pm
  107. lib/perl5/site_perl/Bio/DB/GFF/Util/Rearrange.pm
  108. lib/perl5/site_perl/Bio/DB/GenericWebAgent.pm
  109. lib/perl5/site_perl/Bio/DB/InMemoryCache.pm
  110. lib/perl5/site_perl/Bio/DB/IndexedBase.pm
  111. lib/perl5/site_perl/Bio/DB/LocationI.pm
  112. lib/perl5/site_perl/Bio/DB/Qual.pm
  113. lib/perl5/site_perl/Bio/DB/Query/WebQuery.pm
  114. lib/perl5/site_perl/Bio/DB/QueryI.pm
  115. lib/perl5/site_perl/Bio/DB/RandomAccessI.pm
  116. lib/perl5/site_perl/Bio/DB/ReferenceI.pm
  117. lib/perl5/site_perl/Bio/DB/Registry.pm
  118. lib/perl5/site_perl/Bio/DB/SeqI.pm
  119. lib/perl5/site_perl/Bio/DB/Taxonomy.pm
  120. lib/perl5/site_perl/Bio/DB/Taxonomy/flatfile.pm
  121. lib/perl5/site_perl/Bio/DB/Taxonomy/greengenes.pm
  122. lib/perl5/site_perl/Bio/DB/Taxonomy/list.pm
  123. lib/perl5/site_perl/Bio/DB/Taxonomy/silva.pm
  124. lib/perl5/site_perl/Bio/DB/UpdateableSeqI.pm
  125. lib/perl5/site_perl/Bio/DB/WebDBSeqI.pm
  126. lib/perl5/site_perl/Bio/DBLinkContainerI.pm
  127. lib/perl5/site_perl/Bio/Das/FeatureTypeI.pm
  128. lib/perl5/site_perl/Bio/Das/SegmentI.pm
  129. lib/perl5/site_perl/Bio/DasI.pm
  130. lib/perl5/site_perl/Bio/DescribableI.pm
  131. lib/perl5/site_perl/Bio/Event/EventGeneratorI.pm
  132. lib/perl5/site_perl/Bio/Event/EventHandlerI.pm
  133. lib/perl5/site_perl/Bio/Factory/AnalysisI.pm
  134. lib/perl5/site_perl/Bio/Factory/ApplicationFactoryI.pm
  135. lib/perl5/site_perl/Bio/Factory/DriverFactory.pm
  136. lib/perl5/site_perl/Bio/Factory/FTLocationFactory.pm
  137. lib/perl5/site_perl/Bio/Factory/LocationFactoryI.pm
  138. lib/perl5/site_perl/Bio/Factory/ObjectBuilderI.pm
  139. lib/perl5/site_perl/Bio/Factory/ObjectFactory.pm
  140. lib/perl5/site_perl/Bio/Factory/ObjectFactoryI.pm
  141. lib/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactory.pm
  142. lib/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactoryI.pm
  143. lib/perl5/site_perl/Bio/Factory/SequenceFactoryI.pm
  144. lib/perl5/site_perl/Bio/Factory/SequenceProcessorI.pm
  145. lib/perl5/site_perl/Bio/Factory/SequenceStreamI.pm
  146. lib/perl5/site_perl/Bio/Factory/TreeFactoryI.pm
  147. lib/perl5/site_perl/Bio/FeatureHolderI.pm
  148. lib/perl5/site_perl/Bio/HandlerBaseI.pm
  149. lib/perl5/site_perl/Bio/IdCollectionI.pm
  150. lib/perl5/site_perl/Bio/IdentifiableI.pm
  151. lib/perl5/site_perl/Bio/Index/Abstract.pm
  152. lib/perl5/site_perl/Bio/Index/AbstractSeq.pm
  153. lib/perl5/site_perl/Bio/Index/Blast.pm
  154. lib/perl5/site_perl/Bio/Index/BlastTable.pm
  155. lib/perl5/site_perl/Bio/Index/EMBL.pm
  156. lib/perl5/site_perl/Bio/Index/Fasta.pm
  157. lib/perl5/site_perl/Bio/Index/Fastq.pm
  158. lib/perl5/site_perl/Bio/Index/GenBank.pm
  159. lib/perl5/site_perl/Bio/Index/Qual.pm
  160. lib/perl5/site_perl/Bio/Index/SwissPfam.pm
  161. lib/perl5/site_perl/Bio/Index/Swissprot.pm
  162. lib/perl5/site_perl/Bio/LocatableSeq.pm
  163. lib/perl5/site_perl/Bio/Location/Atomic.pm
  164. lib/perl5/site_perl/Bio/Location/AvWithinCoordPolicy.pm
  165. lib/perl5/site_perl/Bio/Location/CoordinatePolicyI.pm
  166. lib/perl5/site_perl/Bio/Location/Fuzzy.pm
  167. lib/perl5/site_perl/Bio/Location/FuzzyLocationI.pm
  168. lib/perl5/site_perl/Bio/Location/NarrowestCoordPolicy.pm
  169. lib/perl5/site_perl/Bio/Location/Simple.pm
  170. lib/perl5/site_perl/Bio/Location/Split.pm
  171. lib/perl5/site_perl/Bio/Location/SplitLocationI.pm
  172. lib/perl5/site_perl/Bio/Location/WidestCoordPolicy.pm
  173. lib/perl5/site_perl/Bio/LocationI.pm
  174. lib/perl5/site_perl/Bio/Matrix/Generic.pm
  175. lib/perl5/site_perl/Bio/Matrix/IO.pm
  176. lib/perl5/site_perl/Bio/Matrix/IO/mlagan.pm
  177. lib/perl5/site_perl/Bio/Matrix/IO/phylip.pm
  178. lib/perl5/site_perl/Bio/Matrix/IO/scoring.pm
  179. lib/perl5/site_perl/Bio/Matrix/MatrixI.pm
  180. lib/perl5/site_perl/Bio/Matrix/Mlagan.pm
  181. lib/perl5/site_perl/Bio/Matrix/PSM/IO.pm
  182. lib/perl5/site_perl/Bio/Matrix/PSM/IO/mast.pm
  183. lib/perl5/site_perl/Bio/Matrix/PSM/IO/masta.pm
  184. lib/perl5/site_perl/Bio/Matrix/PSM/IO/meme.pm
  185. lib/perl5/site_perl/Bio/Matrix/PSM/IO/psiblast.pm
  186. lib/perl5/site_perl/Bio/Matrix/PSM/IO/transfac.pm
  187. lib/perl5/site_perl/Bio/Matrix/PSM/InstanceSite.pm
  188. lib/perl5/site_perl/Bio/Matrix/PSM/InstanceSiteI.pm
  189. lib/perl5/site_perl/Bio/Matrix/PSM/ProtMatrix.pm
  190. lib/perl5/site_perl/Bio/Matrix/PSM/ProtPsm.pm
  191. lib/perl5/site_perl/Bio/Matrix/PSM/Psm.pm
  192. lib/perl5/site_perl/Bio/Matrix/PSM/PsmHeader.pm
  193. lib/perl5/site_perl/Bio/Matrix/PSM/PsmHeaderI.pm
  194. lib/perl5/site_perl/Bio/Matrix/PSM/PsmI.pm
  195. lib/perl5/site_perl/Bio/Matrix/PSM/SiteMatrix.pm
  196. lib/perl5/site_perl/Bio/Matrix/PSM/SiteMatrixI.pm
  197. lib/perl5/site_perl/Bio/Matrix/PhylipDist.pm
  198. lib/perl5/site_perl/Bio/Matrix/Scoring.pm
  199. lib/perl5/site_perl/Bio/Ontology/DocumentRegistry.pm
  200. lib/perl5/site_perl/Bio/Ontology/GOterm.pm
  201. lib/perl5/site_perl/Bio/Ontology/InterProTerm.pm
  202. lib/perl5/site_perl/Bio/Ontology/OBOEngine.pm
  203. lib/perl5/site_perl/Bio/Ontology/OBOterm.pm
  204. lib/perl5/site_perl/Bio/Ontology/Ontology.pm
  205. lib/perl5/site_perl/Bio/Ontology/OntologyEngineI.pm
  206. lib/perl5/site_perl/Bio/Ontology/OntologyI.pm
  207. lib/perl5/site_perl/Bio/Ontology/OntologyStore.pm
  208. lib/perl5/site_perl/Bio/Ontology/Path.pm
  209. lib/perl5/site_perl/Bio/Ontology/PathI.pm
  210. lib/perl5/site_perl/Bio/Ontology/Relationship.pm
  211. lib/perl5/site_perl/Bio/Ontology/RelationshipFactory.pm
  212. lib/perl5/site_perl/Bio/Ontology/RelationshipI.pm
  213. lib/perl5/site_perl/Bio/Ontology/RelationshipType.pm
  214. lib/perl5/site_perl/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
  215. lib/perl5/site_perl/Bio/Ontology/SimpleOntologyEngine.pm
  216. lib/perl5/site_perl/Bio/Ontology/Term.pm
  217. lib/perl5/site_perl/Bio/Ontology/TermFactory.pm
  218. lib/perl5/site_perl/Bio/Ontology/TermI.pm
  219. lib/perl5/site_perl/Bio/OntologyIO.pm
  220. lib/perl5/site_perl/Bio/OntologyIO/Handlers/BaseSAXHandler.pm
  221. lib/perl5/site_perl/Bio/OntologyIO/Handlers/InterProHandler.pm
  222. lib/perl5/site_perl/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
  223. lib/perl5/site_perl/Bio/OntologyIO/InterProParser.pm
  224. lib/perl5/site_perl/Bio/OntologyIO/dagflat.pm
  225. lib/perl5/site_perl/Bio/OntologyIO/goflat.pm
  226. lib/perl5/site_perl/Bio/OntologyIO/obo.pm
  227. lib/perl5/site_perl/Bio/OntologyIO/simplehierarchy.pm
  228. lib/perl5/site_perl/Bio/OntologyIO/soflat.pm
  229. lib/perl5/site_perl/Bio/ParameterBaseI.pm
  230. lib/perl5/site_perl/Bio/PrimarySeq.pm
  231. lib/perl5/site_perl/Bio/PrimarySeqI.pm
  232. lib/perl5/site_perl/Bio/PullParserI.pm
  233. lib/perl5/site_perl/Bio/Range.pm
  234. lib/perl5/site_perl/Bio/RangeI.pm
  235. lib/perl5/site_perl/Bio/Root/Exception.pm
  236. lib/perl5/site_perl/Bio/Root/HTTPget.pm
  237. lib/perl5/site_perl/Bio/Root/IO.pm
  238. lib/perl5/site_perl/Bio/Root/Root.pm
  239. lib/perl5/site_perl/Bio/Root/RootI.pm
  240. lib/perl5/site_perl/Bio/Root/Storable.pm
  241. lib/perl5/site_perl/Bio/Root/Test.pm
  242. lib/perl5/site_perl/Bio/Root/TestObject.pm
  243. lib/perl5/site_perl/Bio/Root/Utilities.pm
  244. lib/perl5/site_perl/Bio/Root/Version.pm
  245. lib/perl5/site_perl/Bio/Search/BlastStatistics.pm
  246. lib/perl5/site_perl/Bio/Search/BlastUtils.pm
  247. lib/perl5/site_perl/Bio/Search/DatabaseI.pm
  248. lib/perl5/site_perl/Bio/Search/GenericDatabase.pm
  249. lib/perl5/site_perl/Bio/Search/GenericStatistics.pm
  250. lib/perl5/site_perl/Bio/Search/HSP/BlastHSP.pm
  251. lib/perl5/site_perl/Bio/Search/HSP/BlastPullHSP.pm
  252. lib/perl5/site_perl/Bio/Search/HSP/FastaHSP.pm
  253. lib/perl5/site_perl/Bio/Search/HSP/GenericHSP.pm
  254. lib/perl5/site_perl/Bio/Search/HSP/HSPFactory.pm
  255. lib/perl5/site_perl/Bio/Search/HSP/HSPI.pm
  256. lib/perl5/site_perl/Bio/Search/HSP/ModelHSP.pm
  257. lib/perl5/site_perl/Bio/Search/HSP/PSLHSP.pm
  258. lib/perl5/site_perl/Bio/Search/HSP/PsiBlastHSP.pm
  259. lib/perl5/site_perl/Bio/Search/HSP/PullHSPI.pm
  260. lib/perl5/site_perl/Bio/Search/HSP/WABAHSP.pm
  261. lib/perl5/site_perl/Bio/Search/Hit/BlastHit.pm
  262. lib/perl5/site_perl/Bio/Search/Hit/BlastPullHit.pm
  263. lib/perl5/site_perl/Bio/Search/Hit/Fasta.pm
  264. lib/perl5/site_perl/Bio/Search/Hit/GenericHit.pm
  265. lib/perl5/site_perl/Bio/Search/Hit/HitFactory.pm
  266. lib/perl5/site_perl/Bio/Search/Hit/HitI.pm
  267. lib/perl5/site_perl/Bio/Search/Hit/ModelHit.pm
  268. lib/perl5/site_perl/Bio/Search/Hit/PsiBlastHit.pm
  269. lib/perl5/site_perl/Bio/Search/Hit/PullHitI.pm
  270. lib/perl5/site_perl/Bio/Search/Iteration/GenericIteration.pm
  271. lib/perl5/site_perl/Bio/Search/Iteration/IterationI.pm
  272. lib/perl5/site_perl/Bio/Search/Processor.pm
  273. lib/perl5/site_perl/Bio/Search/Result/BlastPullResult.pm
  274. lib/perl5/site_perl/Bio/Search/Result/BlastResult.pm
  275. lib/perl5/site_perl/Bio/Search/Result/CrossMatchResult.pm
  276. lib/perl5/site_perl/Bio/Search/Result/GenericResult.pm
  277. lib/perl5/site_perl/Bio/Search/Result/INFERNALResult.pm
  278. lib/perl5/site_perl/Bio/Search/Result/PullResultI.pm
  279. lib/perl5/site_perl/Bio/Search/Result/ResultFactory.pm
  280. lib/perl5/site_perl/Bio/Search/Result/ResultI.pm
  281. lib/perl5/site_perl/Bio/Search/Result/WABAResult.pm
  282. lib/perl5/site_perl/Bio/Search/SearchUtils.pm
  283. lib/perl5/site_perl/Bio/Search/StatisticsI.pm
  284. lib/perl5/site_perl/Bio/Search/Tiling/MapTileUtils.pm
  285. lib/perl5/site_perl/Bio/Search/Tiling/MapTiling.pm
  286. lib/perl5/site_perl/Bio/Search/Tiling/TilingI.pm
  287. lib/perl5/site_perl/Bio/SearchIO.pm
  288. lib/perl5/site_perl/Bio/SearchIO/EventHandlerI.pm
  289. lib/perl5/site_perl/Bio/SearchIO/FastHitEventBuilder.pm
  290. lib/perl5/site_perl/Bio/SearchIO/IteratedSearchResultEventBuilder.pm
  291. lib/perl5/site_perl/Bio/SearchIO/SearchResultEventBuilder.pm
  292. lib/perl5/site_perl/Bio/SearchIO/SearchWriterI.pm
  293. lib/perl5/site_perl/Bio/SearchIO/Writer/GbrowseGFF.pm
  294. lib/perl5/site_perl/Bio/SearchIO/Writer/HSPTableWriter.pm
  295. lib/perl5/site_perl/Bio/SearchIO/Writer/HTMLResultWriter.pm
  296. lib/perl5/site_perl/Bio/SearchIO/Writer/HitTableWriter.pm
  297. lib/perl5/site_perl/Bio/SearchIO/Writer/ResultTableWriter.pm
  298. lib/perl5/site_perl/Bio/SearchIO/Writer/TextResultWriter.pm
  299. lib/perl5/site_perl/Bio/SearchIO/axt.pm
  300. lib/perl5/site_perl/Bio/SearchIO/blast.pm
  301. lib/perl5/site_perl/Bio/SearchIO/blast_pull.pm
  302. lib/perl5/site_perl/Bio/SearchIO/blasttable.pm
  303. lib/perl5/site_perl/Bio/SearchIO/cross_match.pm
  304. lib/perl5/site_perl/Bio/SearchIO/erpin.pm
  305. lib/perl5/site_perl/Bio/SearchIO/exonerate.pm
  306. lib/perl5/site_perl/Bio/SearchIO/fasta.pm
  307. lib/perl5/site_perl/Bio/SearchIO/gmap_f9.pm
  308. lib/perl5/site_perl/Bio/SearchIO/infernal.pm
  309. lib/perl5/site_perl/Bio/SearchIO/megablast.pm
  310. lib/perl5/site_perl/Bio/SearchIO/psl.pm
  311. lib/perl5/site_perl/Bio/SearchIO/rnamotif.pm
  312. lib/perl5/site_perl/Bio/SearchIO/sim4.pm
  313. lib/perl5/site_perl/Bio/SearchIO/waba.pm
  314. lib/perl5/site_perl/Bio/SearchIO/wise.pm
  315. lib/perl5/site_perl/Bio/Seq.pm
  316. lib/perl5/site_perl/Bio/Seq/BaseSeqProcessor.pm
  317. lib/perl5/site_perl/Bio/Seq/EncodedSeq.pm
  318. lib/perl5/site_perl/Bio/Seq/LargeLocatableSeq.pm
  319. lib/perl5/site_perl/Bio/Seq/LargePrimarySeq.pm
  320. lib/perl5/site_perl/Bio/Seq/LargeSeq.pm
  321. lib/perl5/site_perl/Bio/Seq/LargeSeqI.pm
  322. lib/perl5/site_perl/Bio/Seq/Meta.pm
  323. lib/perl5/site_perl/Bio/Seq/Meta/Array.pm
  324. lib/perl5/site_perl/Bio/Seq/MetaI.pm
  325. lib/perl5/site_perl/Bio/Seq/PrimaryQual.pm
  326. lib/perl5/site_perl/Bio/Seq/PrimedSeq.pm
  327. lib/perl5/site_perl/Bio/Seq/QualI.pm
  328. lib/perl5/site_perl/Bio/Seq/Quality.pm
  329. lib/perl5/site_perl/Bio/Seq/RichSeq.pm
  330. lib/perl5/site_perl/Bio/Seq/RichSeqI.pm
  331. lib/perl5/site_perl/Bio/Seq/SeqBuilder.pm
  332. lib/perl5/site_perl/Bio/Seq/SeqFactory.pm
  333. lib/perl5/site_perl/Bio/Seq/SeqFastaSpeedFactory.pm
  334. lib/perl5/site_perl/Bio/Seq/SequenceTrace.pm
  335. lib/perl5/site_perl/Bio/Seq/SimulatedRead.pm
  336. lib/perl5/site_perl/Bio/Seq/TraceI.pm
  337. lib/perl5/site_perl/Bio/SeqAnalysisParserI.pm
  338. lib/perl5/site_perl/Bio/SeqFeature/Amplicon.pm
  339. lib/perl5/site_perl/Bio/SeqFeature/AnnotationAdaptor.pm
  340. lib/perl5/site_perl/Bio/SeqFeature/Collection.pm
  341. lib/perl5/site_perl/Bio/SeqFeature/CollectionI.pm
  342. lib/perl5/site_perl/Bio/SeqFeature/Computation.pm
  343. lib/perl5/site_perl/Bio/SeqFeature/FeaturePair.pm
  344. lib/perl5/site_perl/Bio/SeqFeature/Gene/Exon.pm
  345. lib/perl5/site_perl/Bio/SeqFeature/Gene/ExonI.pm
  346. lib/perl5/site_perl/Bio/SeqFeature/Gene/GeneStructure.pm
  347. lib/perl5/site_perl/Bio/SeqFeature/Gene/GeneStructureI.pm
  348. lib/perl5/site_perl/Bio/SeqFeature/Gene/Intron.pm
  349. lib/perl5/site_perl/Bio/SeqFeature/Gene/NC_Feature.pm
  350. lib/perl5/site_perl/Bio/SeqFeature/Gene/Poly_A_site.pm
  351. lib/perl5/site_perl/Bio/SeqFeature/Gene/Promoter.pm
  352. lib/perl5/site_perl/Bio/SeqFeature/Gene/Transcript.pm
  353. lib/perl5/site_perl/Bio/SeqFeature/Gene/TranscriptI.pm
  354. lib/perl5/site_perl/Bio/SeqFeature/Gene/UTR.pm
  355. lib/perl5/site_perl/Bio/SeqFeature/Generic.pm
  356. lib/perl5/site_perl/Bio/SeqFeature/Lite.pm
  357. lib/perl5/site_perl/Bio/SeqFeature/PositionProxy.pm
  358. lib/perl5/site_perl/Bio/SeqFeature/Primer.pm
  359. lib/perl5/site_perl/Bio/SeqFeature/Similarity.pm
  360. lib/perl5/site_perl/Bio/SeqFeature/SimilarityPair.pm
  361. lib/perl5/site_perl/Bio/SeqFeature/SubSeq.pm
  362. lib/perl5/site_perl/Bio/SeqFeature/Tools/FeatureNamer.pm
  363. lib/perl5/site_perl/Bio/SeqFeature/Tools/IDHandler.pm
  364. lib/perl5/site_perl/Bio/SeqFeature/Tools/TypeMapper.pm
  365. lib/perl5/site_perl/Bio/SeqFeature/Tools/Unflattener.pm
  366. lib/perl5/site_perl/Bio/SeqFeature/TypedSeqFeatureI.pm
  367. lib/perl5/site_perl/Bio/SeqFeatureI.pm
  368. lib/perl5/site_perl/Bio/SeqI.pm
  369. lib/perl5/site_perl/Bio/SeqIO.pm
  370. lib/perl5/site_perl/Bio/SeqIO/FTHelper.pm
  371. lib/perl5/site_perl/Bio/SeqIO/Handler/GenericRichSeqHandler.pm
  372. lib/perl5/site_perl/Bio/SeqIO/MultiFile.pm
  373. lib/perl5/site_perl/Bio/SeqIO/ace.pm
  374. lib/perl5/site_perl/Bio/SeqIO/asciitree.pm
  375. lib/perl5/site_perl/Bio/SeqIO/bsml.pm
  376. lib/perl5/site_perl/Bio/SeqIO/bsml_sax.pm
  377. lib/perl5/site_perl/Bio/SeqIO/embl.pm
  378. lib/perl5/site_perl/Bio/SeqIO/embldriver.pm
  379. lib/perl5/site_perl/Bio/SeqIO/fasta.pm
  380. lib/perl5/site_perl/Bio/SeqIO/fastq.pm
  381. lib/perl5/site_perl/Bio/SeqIO/game.pm
  382. lib/perl5/site_perl/Bio/SeqIO/game/featHandler.pm
  383. lib/perl5/site_perl/Bio/SeqIO/game/gameHandler.pm
  384. lib/perl5/site_perl/Bio/SeqIO/game/gameSubs.pm
  385. lib/perl5/site_perl/Bio/SeqIO/game/gameWriter.pm
  386. lib/perl5/site_perl/Bio/SeqIO/game/seqHandler.pm
  387. lib/perl5/site_perl/Bio/SeqIO/gbdriver.pm
  388. lib/perl5/site_perl/Bio/SeqIO/gbxml.pm
  389. lib/perl5/site_perl/Bio/SeqIO/gcg.pm
  390. lib/perl5/site_perl/Bio/SeqIO/genbank.pm
  391. lib/perl5/site_perl/Bio/SeqIO/interpro.pm
  392. lib/perl5/site_perl/Bio/SeqIO/kegg.pm
  393. lib/perl5/site_perl/Bio/SeqIO/largefasta.pm
  394. lib/perl5/site_perl/Bio/SeqIO/locuslink.pm
  395. lib/perl5/site_perl/Bio/SeqIO/mbsout.pm
  396. lib/perl5/site_perl/Bio/SeqIO/metafasta.pm
  397. lib/perl5/site_perl/Bio/SeqIO/msout.pm
  398. lib/perl5/site_perl/Bio/SeqIO/phd.pm
  399. lib/perl5/site_perl/Bio/SeqIO/pir.pm
  400. lib/perl5/site_perl/Bio/SeqIO/qual.pm
  401. lib/perl5/site_perl/Bio/SeqIO/raw.pm
  402. lib/perl5/site_perl/Bio/SeqIO/scf.pm
  403. lib/perl5/site_perl/Bio/SeqIO/seqxml.pm
  404. lib/perl5/site_perl/Bio/SeqIO/swiss.pm
  405. lib/perl5/site_perl/Bio/SeqIO/swissdriver.pm
  406. lib/perl5/site_perl/Bio/SeqIO/tab.pm
  407. lib/perl5/site_perl/Bio/SeqIO/table.pm
  408. lib/perl5/site_perl/Bio/SeqIO/tigr.pm
  409. lib/perl5/site_perl/Bio/SeqIO/tigrxml.pm
  410. lib/perl5/site_perl/Bio/SeqIO/tinyseq.pm
  411. lib/perl5/site_perl/Bio/SeqIO/tinyseq/tinyseqHandler.pm
  412. lib/perl5/site_perl/Bio/SeqUtils.pm
  413. lib/perl5/site_perl/Bio/SimpleAlign.pm
  414. lib/perl5/site_perl/Bio/SimpleAnalysisI.pm
  415. lib/perl5/site_perl/Bio/Species.pm
  416. lib/perl5/site_perl/Bio/Taxon.pm
  417. lib/perl5/site_perl/Bio/Tools/Alignment/Consed.pm
  418. lib/perl5/site_perl/Bio/Tools/Alignment/Trim.pm
  419. lib/perl5/site_perl/Bio/Tools/AmpliconSearch.pm
  420. lib/perl5/site_perl/Bio/Tools/Analysis/SimpleAnalysisBase.pm
  421. lib/perl5/site_perl/Bio/Tools/AnalysisResult.pm
  422. lib/perl5/site_perl/Bio/Tools/Blat.pm
  423. lib/perl5/site_perl/Bio/Tools/CodonTable.pm
  424. lib/perl5/site_perl/Bio/Tools/Coil.pm
  425. lib/perl5/site_perl/Bio/Tools/ECnumber.pm
  426. lib/perl5/site_perl/Bio/Tools/EMBOSS/Palindrome.pm
  427. lib/perl5/site_perl/Bio/Tools/EPCR.pm
  428. lib/perl5/site_perl/Bio/Tools/ESTScan.pm
  429. lib/perl5/site_perl/Bio/Tools/Eponine.pm
  430. lib/perl5/site_perl/Bio/Tools/Est2Genome.pm
  431. lib/perl5/site_perl/Bio/Tools/Fgenesh.pm
  432. lib/perl5/site_perl/Bio/Tools/FootPrinter.pm
  433. lib/perl5/site_perl/Bio/Tools/GFF.pm
  434. lib/perl5/site_perl/Bio/Tools/Geneid.pm
  435. lib/perl5/site_perl/Bio/Tools/Genemark.pm
  436. lib/perl5/site_perl/Bio/Tools/Genewise.pm
  437. lib/perl5/site_perl/Bio/Tools/Genomewise.pm
  438. lib/perl5/site_perl/Bio/Tools/Genscan.pm
  439. lib/perl5/site_perl/Bio/Tools/Glimmer.pm
  440. lib/perl5/site_perl/Bio/Tools/Grail.pm
  441. lib/perl5/site_perl/Bio/Tools/GuessSeqFormat.pm
  442. lib/perl5/site_perl/Bio/Tools/IUPAC.pm
  443. lib/perl5/site_perl/Bio/Tools/Lucy.pm
  444. lib/perl5/site_perl/Bio/Tools/MZEF.pm
  445. lib/perl5/site_perl/Bio/Tools/Match.pm
  446. lib/perl5/site_perl/Bio/Tools/OddCodes.pm
  447. lib/perl5/site_perl/Bio/Tools/Phylo/Gerp.pm
  448. lib/perl5/site_perl/Bio/Tools/Phylo/Molphy.pm
  449. lib/perl5/site_perl/Bio/Tools/Phylo/Molphy/Result.pm
  450. lib/perl5/site_perl/Bio/Tools/Phylo/Phylip/ProtDist.pm
  451. lib/perl5/site_perl/Bio/Tools/Prediction/Exon.pm
  452. lib/perl5/site_perl/Bio/Tools/Prediction/Gene.pm
  453. lib/perl5/site_perl/Bio/Tools/Primer/Assessor/Base.pm
  454. lib/perl5/site_perl/Bio/Tools/Primer/AssessorI.pm
  455. lib/perl5/site_perl/Bio/Tools/Primer/Feature.pm
  456. lib/perl5/site_perl/Bio/Tools/Primer/Pair.pm
  457. lib/perl5/site_perl/Bio/Tools/Primer3.pm
  458. lib/perl5/site_perl/Bio/Tools/Prints.pm
  459. lib/perl5/site_perl/Bio/Tools/Profile.pm
  460. lib/perl5/site_perl/Bio/Tools/Promoterwise.pm
  461. lib/perl5/site_perl/Bio/Tools/PrositeScan.pm
  462. lib/perl5/site_perl/Bio/Tools/Pseudowise.pm
  463. lib/perl5/site_perl/Bio/Tools/QRNA.pm
  464. lib/perl5/site_perl/Bio/Tools/RandomDistFunctions.pm
  465. lib/perl5/site_perl/Bio/Tools/RepeatMasker.pm
  466. lib/perl5/site_perl/Bio/Tools/Run/Analysis.pm
  467. lib/perl5/site_perl/Bio/Tools/Run/AnalysisFactory.pm
  468. lib/perl5/site_perl/Bio/Tools/Run/GenericParameters.pm
  469. lib/perl5/site_perl/Bio/Tools/Run/ParametersI.pm
  470. lib/perl5/site_perl/Bio/Tools/Run/Phylo/PhyloBase.pm
  471. lib/perl5/site_perl/Bio/Tools/Run/WrapperBase.pm
  472. lib/perl5/site_perl/Bio/Tools/Run/WrapperBase/CommandExts.pm
  473. lib/perl5/site_perl/Bio/Tools/Seg.pm
  474. lib/perl5/site_perl/Bio/Tools/SeqPattern.pm
  475. lib/perl5/site_perl/Bio/Tools/SeqPattern/Backtranslate.pm
  476. lib/perl5/site_perl/Bio/Tools/SeqStats.pm
  477. lib/perl5/site_perl/Bio/Tools/SeqWords.pm
  478. lib/perl5/site_perl/Bio/Tools/Sigcleave.pm
  479. lib/perl5/site_perl/Bio/Tools/Signalp.pm
  480. lib/perl5/site_perl/Bio/Tools/Signalp/ExtendedSignalp.pm
  481. lib/perl5/site_perl/Bio/Tools/Sim4/Exon.pm
  482. lib/perl5/site_perl/Bio/Tools/Sim4/Results.pm
  483. lib/perl5/site_perl/Bio/Tools/Spidey/Exon.pm
  484. lib/perl5/site_perl/Bio/Tools/Spidey/Results.pm
  485. lib/perl5/site_perl/Bio/Tools/TandemRepeatsFinder.pm
  486. lib/perl5/site_perl/Bio/Tools/TargetP.pm
  487. lib/perl5/site_perl/Bio/Tools/Tmhmm.pm
  488. lib/perl5/site_perl/Bio/Tools/ipcress.pm
  489. lib/perl5/site_perl/Bio/Tools/isPcr.pm
  490. lib/perl5/site_perl/Bio/Tools/pICalculator.pm
  491. lib/perl5/site_perl/Bio/Tools/tRNAscanSE.pm
  492. lib/perl5/site_perl/Bio/Tree/AnnotatableNode.pm
  493. lib/perl5/site_perl/Bio/Tree/Compatible.pm
  494. lib/perl5/site_perl/Bio/Tree/DistanceFactory.pm
  495. lib/perl5/site_perl/Bio/Tree/Node.pm
  496. lib/perl5/site_perl/Bio/Tree/NodeI.pm
  497. lib/perl5/site_perl/Bio/Tree/NodeNHX.pm
  498. lib/perl5/site_perl/Bio/Tree/RandomFactory.pm
  499. lib/perl5/site_perl/Bio/Tree/Statistics.pm
  500. lib/perl5/site_perl/Bio/Tree/Tree.pm
  501. lib/perl5/site_perl/Bio/Tree/TreeFunctionsI.pm
  502. lib/perl5/site_perl/Bio/Tree/TreeI.pm
  503. lib/perl5/site_perl/Bio/TreeIO.pm
  504. lib/perl5/site_perl/Bio/TreeIO/NewickParser.pm
  505. lib/perl5/site_perl/Bio/TreeIO/TreeEventBuilder.pm
  506. lib/perl5/site_perl/Bio/TreeIO/cluster.pm
  507. lib/perl5/site_perl/Bio/TreeIO/lintree.pm
  508. lib/perl5/site_perl/Bio/TreeIO/newick.pm
  509. lib/perl5/site_perl/Bio/TreeIO/nexus.pm
  510. lib/perl5/site_perl/Bio/TreeIO/nhx.pm
  511. lib/perl5/site_perl/Bio/TreeIO/pag.pm
  512. lib/perl5/site_perl/Bio/TreeIO/phyloxml.pm
  513. lib/perl5/site_perl/Bio/TreeIO/tabtree.pm
  514. lib/perl5/site_perl/Bio/UpdateableSeqI.pm
  515. lib/perl5/site_perl/Bio/WebAgent.pm
  516. lib/perl5/site_perl/BioPerl.pm
  517. lib/perl5/site_perl/man/man1/bp_aacomp.1.gz
  518. lib/perl5/site_perl/man/man1/bp_bioflat_index.1.gz
  519. lib/perl5/site_perl/man/man1/bp_biogetseq.1.gz
  520. lib/perl5/site_perl/man/man1/bp_dbsplit.1.gz
  521. lib/perl5/site_perl/man/man1/bp_extract_feature_seq.1.gz
  522. lib/perl5/site_perl/man/man1/bp_fastam9_to_table.1.gz
  523. lib/perl5/site_perl/man/man1/bp_fetch.1.gz
  524. lib/perl5/site_perl/man/man1/bp_filter_search.1.gz
  525. lib/perl5/site_perl/man/man1/bp_find-blast-matches.1.gz
  526. lib/perl5/site_perl/man/man1/bp_gccalc.1.gz
  527. lib/perl5/site_perl/man/man1/bp_genbank2gff3.1.gz
  528. lib/perl5/site_perl/man/man1/bp_index.1.gz
  529. lib/perl5/site_perl/man/man1/bp_local_taxonomydb_query.1.gz
  530. lib/perl5/site_perl/man/man1/bp_make_mrna_protein.1.gz
  531. lib/perl5/site_perl/man/man1/bp_mask_by_search.1.gz
  532. lib/perl5/site_perl/man/man1/bp_mrtrans.1.gz
  533. lib/perl5/site_perl/man/man1/bp_mutate.1.gz
  534. lib/perl5/site_perl/man/man1/bp_nexus2nh.1.gz
  535. lib/perl5/site_perl/man/man1/bp_nrdb.1.gz
  536. lib/perl5/site_perl/man/man1/bp_oligo_count.1.gz
  537. lib/perl5/site_perl/man/man1/bp_process_gadfly.1.gz
  538. lib/perl5/site_perl/man/man1/bp_process_sgd.1.gz
  539. lib/perl5/site_perl/man/man1/bp_revtrans-motif.1.gz
  540. lib/perl5/site_perl/man/man1/bp_search2alnblocks.1.gz
  541. lib/perl5/site_perl/man/man1/bp_search2gff.1.gz
  542. lib/perl5/site_perl/man/man1/bp_search2table.1.gz
  543. lib/perl5/site_perl/man/man1/bp_search2tribe.1.gz
  544. lib/perl5/site_perl/man/man1/bp_seq_length.1.gz
  545. lib/perl5/site_perl/man/man1/bp_seqconvert.1.gz
  546. lib/perl5/site_perl/man/man1/bp_seqcut.1.gz
  547. lib/perl5/site_perl/man/man1/bp_seqpart.1.gz
  548. lib/perl5/site_perl/man/man1/bp_seqret.1.gz
  549. lib/perl5/site_perl/man/man1/bp_seqretsplit.1.gz
  550. lib/perl5/site_perl/man/man1/bp_split_seq.1.gz
  551. lib/perl5/site_perl/man/man1/bp_sreformat.1.gz
  552. lib/perl5/site_perl/man/man1/bp_taxid4species.1.gz
  553. lib/perl5/site_perl/man/man1/bp_taxonomy2tree.1.gz
  554. lib/perl5/site_perl/man/man1/bp_translate_seq.1.gz
  555. lib/perl5/site_perl/man/man1/bp_tree2pag.1.gz
  556. lib/perl5/site_perl/man/man1/bp_unflatten_seq.1.gz
  557. lib/perl5/site_perl/man/man3/Bio::Align::AlignI.3.gz
  558. lib/perl5/site_perl/man/man3/Bio::Align::DNAStatistics.3.gz
  559. lib/perl5/site_perl/man/man3/Bio::Align::PairwiseStatistics.3.gz
  560. lib/perl5/site_perl/man/man3/Bio::Align::ProteinStatistics.3.gz
  561. lib/perl5/site_perl/man/man3/Bio::Align::StatisticsI.3.gz
  562. lib/perl5/site_perl/man/man3/Bio::Align::Utilities.3.gz
  563. lib/perl5/site_perl/man/man3/Bio::AlignIO.3.gz
  564. lib/perl5/site_perl/man/man3/Bio::AlignIO::Handler::GenericAlignHandler.3.gz
  565. lib/perl5/site_perl/man/man3/Bio::AlignIO::arp.3.gz
  566. lib/perl5/site_perl/man/man3/Bio::AlignIO::bl2seq.3.gz
  567. lib/perl5/site_perl/man/man3/Bio::AlignIO::clustalw.3.gz
  568. lib/perl5/site_perl/man/man3/Bio::AlignIO::emboss.3.gz
  569. lib/perl5/site_perl/man/man3/Bio::AlignIO::fasta.3.gz
  570. lib/perl5/site_perl/man/man3/Bio::AlignIO::largemultifasta.3.gz
  571. lib/perl5/site_perl/man/man3/Bio::AlignIO::maf.3.gz
  572. lib/perl5/site_perl/man/man3/Bio::AlignIO::mase.3.gz
  573. lib/perl5/site_perl/man/man3/Bio::AlignIO::mega.3.gz
  574. lib/perl5/site_perl/man/man3/Bio::AlignIO::meme.3.gz
  575. lib/perl5/site_perl/man/man3/Bio::AlignIO::metafasta.3.gz
  576. lib/perl5/site_perl/man/man3/Bio::AlignIO::msf.3.gz
  577. lib/perl5/site_perl/man/man3/Bio::AlignIO::nexus.3.gz
  578. lib/perl5/site_perl/man/man3/Bio::AlignIO::pfam.3.gz
  579. lib/perl5/site_perl/man/man3/Bio::AlignIO::phylip.3.gz
  580. lib/perl5/site_perl/man/man3/Bio::AlignIO::po.3.gz
  581. lib/perl5/site_perl/man/man3/Bio::AlignIO::proda.3.gz
  582. lib/perl5/site_perl/man/man3/Bio::AlignIO::prodom.3.gz
  583. lib/perl5/site_perl/man/man3/Bio::AlignIO::psi.3.gz
  584. lib/perl5/site_perl/man/man3/Bio::AlignIO::selex.3.gz
  585. lib/perl5/site_perl/man/man3/Bio::AlignIO::xmfa.3.gz
  586. lib/perl5/site_perl/man/man3/Bio::AnalysisI.3.gz
  587. lib/perl5/site_perl/man/man3/Bio::AnalysisParserI.3.gz
  588. lib/perl5/site_perl/man/man3/Bio::AnalysisResultI.3.gz
  589. lib/perl5/site_perl/man/man3/Bio::AnnotatableI.3.gz
  590. lib/perl5/site_perl/man/man3/Bio::Annotation::AnnotationFactory.3.gz
  591. lib/perl5/site_perl/man/man3/Bio::Annotation::Collection.3.gz
  592. lib/perl5/site_perl/man/man3/Bio::Annotation::Comment.3.gz
  593. lib/perl5/site_perl/man/man3/Bio::Annotation::DBLink.3.gz
  594. lib/perl5/site_perl/man/man3/Bio::Annotation::OntologyTerm.3.gz
  595. lib/perl5/site_perl/man/man3/Bio::Annotation::Reference.3.gz
  596. lib/perl5/site_perl/man/man3/Bio::Annotation::Relation.3.gz
  597. lib/perl5/site_perl/man/man3/Bio::Annotation::SimpleValue.3.gz
  598. lib/perl5/site_perl/man/man3/Bio::Annotation::StructuredValue.3.gz
  599. lib/perl5/site_perl/man/man3/Bio::Annotation::TagTree.3.gz
  600. lib/perl5/site_perl/man/man3/Bio::Annotation::Target.3.gz
  601. lib/perl5/site_perl/man/man3/Bio::Annotation::Tree.3.gz
  602. lib/perl5/site_perl/man/man3/Bio::Annotation::TypeManager.3.gz
  603. lib/perl5/site_perl/man/man3/Bio::AnnotationCollectionI.3.gz
  604. lib/perl5/site_perl/man/man3/Bio::AnnotationI.3.gz
  605. lib/perl5/site_perl/man/man3/Bio::CodonUsage::IO.3.gz
  606. lib/perl5/site_perl/man/man3/Bio::CodonUsage::Table.3.gz
  607. lib/perl5/site_perl/man/man3/Bio::DB::DBFetch.3.gz
  608. lib/perl5/site_perl/man/man3/Bio::DB::Failover.3.gz
  609. lib/perl5/site_perl/man/man3/Bio::DB::Fasta.3.gz
  610. lib/perl5/site_perl/man/man3/Bio::DB::FileCache.3.gz
  611. lib/perl5/site_perl/man/man3/Bio::DB::Flat.3.gz
  612. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB.3.gz
  613. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::embl.3.gz
  614. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::fasta.3.gz
  615. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::genbank.3.gz
  616. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::swiss.3.gz
  617. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BinarySearch.3.gz
  618. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Util::Binning.3.gz
  619. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Util::Rearrange.3.gz
  620. lib/perl5/site_perl/man/man3/Bio::DB::GenericWebAgent.3.gz
  621. lib/perl5/site_perl/man/man3/Bio::DB::InMemoryCache.3.gz
  622. lib/perl5/site_perl/man/man3/Bio::DB::IndexedBase.3.gz
  623. lib/perl5/site_perl/man/man3/Bio::DB::LocationI.3.gz
  624. lib/perl5/site_perl/man/man3/Bio::DB::Qual.3.gz
  625. lib/perl5/site_perl/man/man3/Bio::DB::Query::WebQuery.3.gz
  626. lib/perl5/site_perl/man/man3/Bio::DB::QueryI.3.gz
  627. lib/perl5/site_perl/man/man3/Bio::DB::RandomAccessI.3.gz
  628. lib/perl5/site_perl/man/man3/Bio::DB::ReferenceI.3.gz
  629. lib/perl5/site_perl/man/man3/Bio::DB::Registry.3.gz
  630. lib/perl5/site_perl/man/man3/Bio::DB::SeqI.3.gz
  631. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy.3.gz
  632. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::flatfile.3.gz
  633. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::greengenes.3.gz
  634. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::list.3.gz
  635. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::silva.3.gz
  636. lib/perl5/site_perl/man/man3/Bio::DB::UpdateableSeqI.3.gz
  637. lib/perl5/site_perl/man/man3/Bio::DB::WebDBSeqI.3.gz
  638. lib/perl5/site_perl/man/man3/Bio::DBLinkContainerI.3.gz
  639. lib/perl5/site_perl/man/man3/Bio::Das::FeatureTypeI.3.gz
  640. lib/perl5/site_perl/man/man3/Bio::Das::SegmentI.3.gz
  641. lib/perl5/site_perl/man/man3/Bio::DasI.3.gz
  642. lib/perl5/site_perl/man/man3/Bio::DescribableI.3.gz
  643. lib/perl5/site_perl/man/man3/Bio::Event::EventGeneratorI.3.gz
  644. lib/perl5/site_perl/man/man3/Bio::Event::EventHandlerI.3.gz
  645. lib/perl5/site_perl/man/man3/Bio::Factory::AnalysisI.3.gz
  646. lib/perl5/site_perl/man/man3/Bio::Factory::ApplicationFactoryI.3.gz
  647. lib/perl5/site_perl/man/man3/Bio::Factory::DriverFactory.3.gz
  648. lib/perl5/site_perl/man/man3/Bio::Factory::FTLocationFactory.3.gz
  649. lib/perl5/site_perl/man/man3/Bio::Factory::LocationFactoryI.3.gz
  650. lib/perl5/site_perl/man/man3/Bio::Factory::ObjectBuilderI.3.gz
  651. lib/perl5/site_perl/man/man3/Bio::Factory::ObjectFactory.3.gz
  652. lib/perl5/site_perl/man/man3/Bio::Factory::ObjectFactoryI.3.gz
  653. lib/perl5/site_perl/man/man3/Bio::Factory::SeqAnalysisParserFactory.3.gz
  654. lib/perl5/site_perl/man/man3/Bio::Factory::SeqAnalysisParserFactoryI.3.gz
  655. lib/perl5/site_perl/man/man3/Bio::Factory::SequenceFactoryI.3.gz
  656. lib/perl5/site_perl/man/man3/Bio::Factory::SequenceProcessorI.3.gz
  657. lib/perl5/site_perl/man/man3/Bio::Factory::SequenceStreamI.3.gz
  658. lib/perl5/site_perl/man/man3/Bio::Factory::TreeFactoryI.3.gz
  659. lib/perl5/site_perl/man/man3/Bio::FeatureHolderI.3.gz
  660. lib/perl5/site_perl/man/man3/Bio::HandlerBaseI.3.gz
  661. lib/perl5/site_perl/man/man3/Bio::IdCollectionI.3.gz
  662. lib/perl5/site_perl/man/man3/Bio::IdentifiableI.3.gz
  663. lib/perl5/site_perl/man/man3/Bio::Index::Abstract.3.gz
  664. lib/perl5/site_perl/man/man3/Bio::Index::AbstractSeq.3.gz
  665. lib/perl5/site_perl/man/man3/Bio::Index::Blast.3.gz
  666. lib/perl5/site_perl/man/man3/Bio::Index::BlastTable.3.gz
  667. lib/perl5/site_perl/man/man3/Bio::Index::EMBL.3.gz
  668. lib/perl5/site_perl/man/man3/Bio::Index::Fasta.3.gz
  669. lib/perl5/site_perl/man/man3/Bio::Index::Fastq.3.gz
  670. lib/perl5/site_perl/man/man3/Bio::Index::GenBank.3.gz
  671. lib/perl5/site_perl/man/man3/Bio::Index::Qual.3.gz
  672. lib/perl5/site_perl/man/man3/Bio::Index::SwissPfam.3.gz
  673. lib/perl5/site_perl/man/man3/Bio::Index::Swissprot.3.gz
  674. lib/perl5/site_perl/man/man3/Bio::LocatableSeq.3.gz
  675. lib/perl5/site_perl/man/man3/Bio::Location::Atomic.3.gz
  676. lib/perl5/site_perl/man/man3/Bio::Location::AvWithinCoordPolicy.3.gz
  677. lib/perl5/site_perl/man/man3/Bio::Location::CoordinatePolicyI.3.gz
  678. lib/perl5/site_perl/man/man3/Bio::Location::Fuzzy.3.gz
  679. lib/perl5/site_perl/man/man3/Bio::Location::FuzzyLocationI.3.gz
  680. lib/perl5/site_perl/man/man3/Bio::Location::NarrowestCoordPolicy.3.gz
  681. lib/perl5/site_perl/man/man3/Bio::Location::Simple.3.gz
  682. lib/perl5/site_perl/man/man3/Bio::Location::Split.3.gz
  683. lib/perl5/site_perl/man/man3/Bio::Location::SplitLocationI.3.gz
  684. lib/perl5/site_perl/man/man3/Bio::Location::WidestCoordPolicy.3.gz
  685. lib/perl5/site_perl/man/man3/Bio::LocationI.3.gz
  686. lib/perl5/site_perl/man/man3/Bio::Matrix::Generic.3.gz
  687. lib/perl5/site_perl/man/man3/Bio::Matrix::IO.3.gz
  688. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::mlagan.3.gz
  689. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::phylip.3.gz
  690. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::scoring.3.gz
  691. lib/perl5/site_perl/man/man3/Bio::Matrix::MatrixI.3.gz
  692. lib/perl5/site_perl/man/man3/Bio::Matrix::Mlagan.3.gz
  693. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO.3.gz
  694. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::mast.3.gz
  695. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::masta.3.gz
  696. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::meme.3.gz
  697. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::psiblast.3.gz
  698. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::transfac.3.gz
  699. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::InstanceSite.3.gz
  700. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::InstanceSiteI.3.gz
  701. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::ProtMatrix.3.gz
  702. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::ProtPsm.3.gz
  703. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::Psm.3.gz
  704. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmHeader.3.gz
  705. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmHeaderI.3.gz
  706. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmI.3.gz
  707. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::SiteMatrix.3.gz
  708. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::SiteMatrixI.3.gz
  709. lib/perl5/site_perl/man/man3/Bio::Matrix::PhylipDist.3.gz
  710. lib/perl5/site_perl/man/man3/Bio::Matrix::Scoring.3.gz
  711. lib/perl5/site_perl/man/man3/Bio::Ontology::DocumentRegistry.3.gz
  712. lib/perl5/site_perl/man/man3/Bio::Ontology::GOterm.3.gz
  713. lib/perl5/site_perl/man/man3/Bio::Ontology::InterProTerm.3.gz
  714. lib/perl5/site_perl/man/man3/Bio::Ontology::OBOEngine.3.gz
  715. lib/perl5/site_perl/man/man3/Bio::Ontology::OBOterm.3.gz
  716. lib/perl5/site_perl/man/man3/Bio::Ontology::Ontology.3.gz
  717. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyEngineI.3.gz
  718. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyI.3.gz
  719. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyStore.3.gz
  720. lib/perl5/site_perl/man/man3/Bio::Ontology::Path.3.gz
  721. lib/perl5/site_perl/man/man3/Bio::Ontology::PathI.3.gz
  722. lib/perl5/site_perl/man/man3/Bio::Ontology::Relationship.3.gz
  723. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipFactory.3.gz
  724. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipI.3.gz
  725. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipType.3.gz
  726. lib/perl5/site_perl/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3.gz
  727. lib/perl5/site_perl/man/man3/Bio::Ontology::SimpleOntologyEngine.3.gz
  728. lib/perl5/site_perl/man/man3/Bio::Ontology::Term.3.gz
  729. lib/perl5/site_perl/man/man3/Bio::Ontology::TermFactory.3.gz
  730. lib/perl5/site_perl/man/man3/Bio::Ontology::TermI.3.gz
  731. lib/perl5/site_perl/man/man3/Bio::OntologyIO.3.gz
  732. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3.gz
  733. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::InterProHandler.3.gz
  734. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3.gz
  735. lib/perl5/site_perl/man/man3/Bio::OntologyIO::InterProParser.3.gz
  736. lib/perl5/site_perl/man/man3/Bio::OntologyIO::dagflat.3.gz
  737. lib/perl5/site_perl/man/man3/Bio::OntologyIO::goflat.3.gz
  738. lib/perl5/site_perl/man/man3/Bio::OntologyIO::obo.3.gz
  739. lib/perl5/site_perl/man/man3/Bio::OntologyIO::simplehierarchy.3.gz
  740. lib/perl5/site_perl/man/man3/Bio::OntologyIO::soflat.3.gz
  741. lib/perl5/site_perl/man/man3/Bio::ParameterBaseI.3.gz
  742. lib/perl5/site_perl/man/man3/Bio::PrimarySeq.3.gz
  743. lib/perl5/site_perl/man/man3/Bio::PrimarySeqI.3.gz
  744. lib/perl5/site_perl/man/man3/Bio::PullParserI.3.gz
  745. lib/perl5/site_perl/man/man3/Bio::Range.3.gz
  746. lib/perl5/site_perl/man/man3/Bio::RangeI.3.gz
  747. lib/perl5/site_perl/man/man3/Bio::Root::Exception.3.gz
  748. lib/perl5/site_perl/man/man3/Bio::Root::HTTPget.3.gz
  749. lib/perl5/site_perl/man/man3/Bio::Root::IO.3.gz
  750. lib/perl5/site_perl/man/man3/Bio::Root::Root.3.gz
  751. lib/perl5/site_perl/man/man3/Bio::Root::RootI.3.gz
  752. lib/perl5/site_perl/man/man3/Bio::Root::Storable.3.gz
  753. lib/perl5/site_perl/man/man3/Bio::Root::Test.3.gz
  754. lib/perl5/site_perl/man/man3/Bio::Root::TestObject.3.gz
  755. lib/perl5/site_perl/man/man3/Bio::Root::Utilities.3.gz
  756. lib/perl5/site_perl/man/man3/Bio::Root::Version.3.gz
  757. lib/perl5/site_perl/man/man3/Bio::Search::BlastStatistics.3.gz
  758. lib/perl5/site_perl/man/man3/Bio::Search::BlastUtils.3.gz
  759. lib/perl5/site_perl/man/man3/Bio::Search::DatabaseI.3.gz
  760. lib/perl5/site_perl/man/man3/Bio::Search::GenericDatabase.3.gz
  761. lib/perl5/site_perl/man/man3/Bio::Search::GenericStatistics.3.gz
  762. lib/perl5/site_perl/man/man3/Bio::Search::HSP::BlastHSP.3.gz
  763. lib/perl5/site_perl/man/man3/Bio::Search::HSP::BlastPullHSP.3.gz
  764. lib/perl5/site_perl/man/man3/Bio::Search::HSP::FastaHSP.3.gz
  765. lib/perl5/site_perl/man/man3/Bio::Search::HSP::GenericHSP.3.gz
  766. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HSPFactory.3.gz
  767. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HSPI.3.gz
  768. lib/perl5/site_perl/man/man3/Bio::Search::HSP::ModelHSP.3.gz
  769. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PSLHSP.3.gz
  770. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PsiBlastHSP.3.gz
  771. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PullHSPI.3.gz
  772. lib/perl5/site_perl/man/man3/Bio::Search::HSP::WABAHSP.3.gz
  773. lib/perl5/site_perl/man/man3/Bio::Search::Hit::BlastHit.3.gz
  774. lib/perl5/site_perl/man/man3/Bio::Search::Hit::BlastPullHit.3.gz
  775. lib/perl5/site_perl/man/man3/Bio::Search::Hit::Fasta.3.gz
  776. lib/perl5/site_perl/man/man3/Bio::Search::Hit::GenericHit.3.gz
  777. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HitFactory.3.gz
  778. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HitI.3.gz
  779. lib/perl5/site_perl/man/man3/Bio::Search::Hit::ModelHit.3.gz
  780. lib/perl5/site_perl/man/man3/Bio::Search::Hit::PsiBlastHit.3.gz
  781. lib/perl5/site_perl/man/man3/Bio::Search::Hit::PullHitI.3.gz
  782. lib/perl5/site_perl/man/man3/Bio::Search::Iteration::GenericIteration.3.gz
  783. lib/perl5/site_perl/man/man3/Bio::Search::Iteration::IterationI.3.gz
  784. lib/perl5/site_perl/man/man3/Bio::Search::Processor.3.gz
  785. lib/perl5/site_perl/man/man3/Bio::Search::Result::BlastPullResult.3.gz
  786. lib/perl5/site_perl/man/man3/Bio::Search::Result::BlastResult.3.gz
  787. lib/perl5/site_perl/man/man3/Bio::Search::Result::CrossMatchResult.3.gz
  788. lib/perl5/site_perl/man/man3/Bio::Search::Result::GenericResult.3.gz
  789. lib/perl5/site_perl/man/man3/Bio::Search::Result::INFERNALResult.3.gz
  790. lib/perl5/site_perl/man/man3/Bio::Search::Result::PullResultI.3.gz
  791. lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultFactory.3.gz
  792. lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultI.3.gz
  793. lib/perl5/site_perl/man/man3/Bio::Search::Result::WABAResult.3.gz
  794. lib/perl5/site_perl/man/man3/Bio::Search::SearchUtils.3.gz
  795. lib/perl5/site_perl/man/man3/Bio::Search::StatisticsI.3.gz
  796. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::MapTileUtils.3.gz
  797. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::MapTiling.3.gz
  798. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::TilingI.3.gz
  799. lib/perl5/site_perl/man/man3/Bio::SearchIO.3.gz
  800. lib/perl5/site_perl/man/man3/Bio::SearchIO::EventHandlerI.3.gz
  801. lib/perl5/site_perl/man/man3/Bio::SearchIO::FastHitEventBuilder.3.gz
  802. lib/perl5/site_perl/man/man3/Bio::SearchIO::IteratedSearchResultEventBuilder.3.gz
  803. lib/perl5/site_perl/man/man3/Bio::SearchIO::SearchResultEventBuilder.3.gz
  804. lib/perl5/site_perl/man/man3/Bio::SearchIO::SearchWriterI.3.gz
  805. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::GbrowseGFF.3.gz
  806. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HSPTableWriter.3.gz
  807. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HTMLResultWriter.3.gz
  808. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HitTableWriter.3.gz
  809. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::ResultTableWriter.3.gz
  810. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::TextResultWriter.3.gz
  811. lib/perl5/site_perl/man/man3/Bio::SearchIO::axt.3.gz
  812. lib/perl5/site_perl/man/man3/Bio::SearchIO::blast.3.gz
  813. lib/perl5/site_perl/man/man3/Bio::SearchIO::blast_pull.3.gz
  814. lib/perl5/site_perl/man/man3/Bio::SearchIO::blasttable.3.gz
  815. lib/perl5/site_perl/man/man3/Bio::SearchIO::cross_match.3.gz
  816. lib/perl5/site_perl/man/man3/Bio::SearchIO::erpin.3.gz
  817. lib/perl5/site_perl/man/man3/Bio::SearchIO::exonerate.3.gz
  818. lib/perl5/site_perl/man/man3/Bio::SearchIO::fasta.3.gz
  819. lib/perl5/site_perl/man/man3/Bio::SearchIO::gmap_f9.3.gz
  820. lib/perl5/site_perl/man/man3/Bio::SearchIO::infernal.3.gz
  821. lib/perl5/site_perl/man/man3/Bio::SearchIO::megablast.3.gz
  822. lib/perl5/site_perl/man/man3/Bio::SearchIO::psl.3.gz
  823. lib/perl5/site_perl/man/man3/Bio::SearchIO::rnamotif.3.gz
  824. lib/perl5/site_perl/man/man3/Bio::SearchIO::sim4.3.gz
  825. lib/perl5/site_perl/man/man3/Bio::SearchIO::waba.3.gz
  826. lib/perl5/site_perl/man/man3/Bio::SearchIO::wise.3.gz
  827. lib/perl5/site_perl/man/man3/Bio::Seq.3.gz
  828. lib/perl5/site_perl/man/man3/Bio::Seq::BaseSeqProcessor.3.gz
  829. lib/perl5/site_perl/man/man3/Bio::Seq::EncodedSeq.3.gz
  830. lib/perl5/site_perl/man/man3/Bio::Seq::LargeLocatableSeq.3.gz
  831. lib/perl5/site_perl/man/man3/Bio::Seq::LargePrimarySeq.3.gz
  832. lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeq.3.gz
  833. lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeqI.3.gz
  834. lib/perl5/site_perl/man/man3/Bio::Seq::Meta.3.gz
  835. lib/perl5/site_perl/man/man3/Bio::Seq::Meta::Array.3.gz
  836. lib/perl5/site_perl/man/man3/Bio::Seq::MetaI.3.gz
  837. lib/perl5/site_perl/man/man3/Bio::Seq::PrimaryQual.3.gz
  838. lib/perl5/site_perl/man/man3/Bio::Seq::PrimedSeq.3.gz
  839. lib/perl5/site_perl/man/man3/Bio::Seq::QualI.3.gz
  840. lib/perl5/site_perl/man/man3/Bio::Seq::Quality.3.gz
  841. lib/perl5/site_perl/man/man3/Bio::Seq::RichSeq.3.gz
  842. lib/perl5/site_perl/man/man3/Bio::Seq::RichSeqI.3.gz
  843. lib/perl5/site_perl/man/man3/Bio::Seq::SeqBuilder.3.gz
  844. lib/perl5/site_perl/man/man3/Bio::Seq::SeqFactory.3.gz
  845. lib/perl5/site_perl/man/man3/Bio::Seq::SeqFastaSpeedFactory.3.gz
  846. lib/perl5/site_perl/man/man3/Bio::Seq::SequenceTrace.3.gz
  847. lib/perl5/site_perl/man/man3/Bio::Seq::SimulatedRead.3.gz
  848. lib/perl5/site_perl/man/man3/Bio::Seq::TraceI.3.gz
  849. lib/perl5/site_perl/man/man3/Bio::SeqAnalysisParserI.3.gz
  850. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Amplicon.3.gz
  851. lib/perl5/site_perl/man/man3/Bio::SeqFeature::AnnotationAdaptor.3.gz
  852. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Collection.3.gz
  853. lib/perl5/site_perl/man/man3/Bio::SeqFeature::CollectionI.3.gz
  854. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Computation.3.gz
  855. lib/perl5/site_perl/man/man3/Bio::SeqFeature::FeaturePair.3.gz
  856. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Exon.3.gz
  857. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::ExonI.3.gz
  858. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::GeneStructure.3.gz
  859. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::GeneStructureI.3.gz
  860. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Intron.3.gz
  861. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::NC_Feature.3.gz
  862. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Poly_A_site.3.gz
  863. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Promoter.3.gz
  864. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Transcript.3.gz
  865. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::TranscriptI.3.gz
  866. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::UTR.3.gz
  867. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Generic.3.gz
  868. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Lite.3.gz
  869. lib/perl5/site_perl/man/man3/Bio::SeqFeature::PositionProxy.3.gz
  870. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Primer.3.gz
  871. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Similarity.3.gz
  872. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SimilarityPair.3.gz
  873. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SubSeq.3.gz
  874. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::FeatureNamer.3.gz
  875. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::IDHandler.3.gz
  876. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::TypeMapper.3.gz
  877. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::Unflattener.3.gz
  878. lib/perl5/site_perl/man/man3/Bio::SeqFeature::TypedSeqFeatureI.3.gz
  879. lib/perl5/site_perl/man/man3/Bio::SeqFeatureI.3.gz
  880. lib/perl5/site_perl/man/man3/Bio::SeqI.3.gz
  881. lib/perl5/site_perl/man/man3/Bio::SeqIO.3.gz
  882. lib/perl5/site_perl/man/man3/Bio::SeqIO::FTHelper.3.gz
  883. lib/perl5/site_perl/man/man3/Bio::SeqIO::Handler::GenericRichSeqHandler.3.gz
  884. lib/perl5/site_perl/man/man3/Bio::SeqIO::MultiFile.3.gz
  885. lib/perl5/site_perl/man/man3/Bio::SeqIO::ace.3.gz
  886. lib/perl5/site_perl/man/man3/Bio::SeqIO::asciitree.3.gz
  887. lib/perl5/site_perl/man/man3/Bio::SeqIO::bsml.3.gz
  888. lib/perl5/site_perl/man/man3/Bio::SeqIO::bsml_sax.3.gz
  889. lib/perl5/site_perl/man/man3/Bio::SeqIO::embl.3.gz
  890. lib/perl5/site_perl/man/man3/Bio::SeqIO::embldriver.3.gz
  891. lib/perl5/site_perl/man/man3/Bio::SeqIO::fasta.3.gz
  892. lib/perl5/site_perl/man/man3/Bio::SeqIO::fastq.3.gz
  893. lib/perl5/site_perl/man/man3/Bio::SeqIO::game.3.gz
  894. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::featHandler.3.gz
  895. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameHandler.3.gz
  896. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameSubs.3.gz
  897. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameWriter.3.gz
  898. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::seqHandler.3.gz
  899. lib/perl5/site_perl/man/man3/Bio::SeqIO::gbdriver.3.gz
  900. lib/perl5/site_perl/man/man3/Bio::SeqIO::gbxml.3.gz
  901. lib/perl5/site_perl/man/man3/Bio::SeqIO::gcg.3.gz
  902. lib/perl5/site_perl/man/man3/Bio::SeqIO::genbank.3.gz
  903. lib/perl5/site_perl/man/man3/Bio::SeqIO::interpro.3.gz
  904. lib/perl5/site_perl/man/man3/Bio::SeqIO::kegg.3.gz
  905. lib/perl5/site_perl/man/man3/Bio::SeqIO::largefasta.3.gz
  906. lib/perl5/site_perl/man/man3/Bio::SeqIO::locuslink.3.gz
  907. lib/perl5/site_perl/man/man3/Bio::SeqIO::mbsout.3.gz
  908. lib/perl5/site_perl/man/man3/Bio::SeqIO::metafasta.3.gz
  909. lib/perl5/site_perl/man/man3/Bio::SeqIO::msout.3.gz
  910. lib/perl5/site_perl/man/man3/Bio::SeqIO::phd.3.gz
  911. lib/perl5/site_perl/man/man3/Bio::SeqIO::pir.3.gz
  912. lib/perl5/site_perl/man/man3/Bio::SeqIO::qual.3.gz
  913. lib/perl5/site_perl/man/man3/Bio::SeqIO::raw.3.gz
  914. lib/perl5/site_perl/man/man3/Bio::SeqIO::scf.3.gz
  915. lib/perl5/site_perl/man/man3/Bio::SeqIO::seqxml.3.gz
  916. lib/perl5/site_perl/man/man3/Bio::SeqIO::swiss.3.gz
  917. lib/perl5/site_perl/man/man3/Bio::SeqIO::swissdriver.3.gz
  918. lib/perl5/site_perl/man/man3/Bio::SeqIO::tab.3.gz
  919. lib/perl5/site_perl/man/man3/Bio::SeqIO::table.3.gz
  920. lib/perl5/site_perl/man/man3/Bio::SeqIO::tigr.3.gz
  921. lib/perl5/site_perl/man/man3/Bio::SeqIO::tigrxml.3.gz
  922. lib/perl5/site_perl/man/man3/Bio::SeqIO::tinyseq.3.gz
  923. lib/perl5/site_perl/man/man3/Bio::SeqIO::tinyseq::tinyseqHandler.3.gz
  924. lib/perl5/site_perl/man/man3/Bio::SeqUtils.3.gz
  925. lib/perl5/site_perl/man/man3/Bio::SimpleAlign.3.gz
  926. lib/perl5/site_perl/man/man3/Bio::SimpleAnalysisI.3.gz
  927. lib/perl5/site_perl/man/man3/Bio::Species.3.gz
  928. lib/perl5/site_perl/man/man3/Bio::Taxon.3.gz
  929. lib/perl5/site_perl/man/man3/Bio::Tools::Alignment::Consed.3.gz
  930. lib/perl5/site_perl/man/man3/Bio::Tools::Alignment::Trim.3.gz
  931. lib/perl5/site_perl/man/man3/Bio::Tools::AmpliconSearch.3.gz
  932. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::SimpleAnalysisBase.3.gz
  933. lib/perl5/site_perl/man/man3/Bio::Tools::AnalysisResult.3.gz
  934. lib/perl5/site_perl/man/man3/Bio::Tools::Blat.3.gz
  935. lib/perl5/site_perl/man/man3/Bio::Tools::CodonTable.3.gz
  936. lib/perl5/site_perl/man/man3/Bio::Tools::Coil.3.gz
  937. lib/perl5/site_perl/man/man3/Bio::Tools::ECnumber.3.gz
  938. lib/perl5/site_perl/man/man3/Bio::Tools::EMBOSS::Palindrome.3.gz
  939. lib/perl5/site_perl/man/man3/Bio::Tools::EPCR.3.gz
  940. lib/perl5/site_perl/man/man3/Bio::Tools::ESTScan.3.gz
  941. lib/perl5/site_perl/man/man3/Bio::Tools::Eponine.3.gz
  942. lib/perl5/site_perl/man/man3/Bio::Tools::Est2Genome.3.gz
  943. lib/perl5/site_perl/man/man3/Bio::Tools::Fgenesh.3.gz
  944. lib/perl5/site_perl/man/man3/Bio::Tools::FootPrinter.3.gz
  945. lib/perl5/site_perl/man/man3/Bio::Tools::GFF.3.gz
  946. lib/perl5/site_perl/man/man3/Bio::Tools::Geneid.3.gz
  947. lib/perl5/site_perl/man/man3/Bio::Tools::Genemark.3.gz
  948. lib/perl5/site_perl/man/man3/Bio::Tools::Genewise.3.gz
  949. lib/perl5/site_perl/man/man3/Bio::Tools::Genomewise.3.gz
  950. lib/perl5/site_perl/man/man3/Bio::Tools::Genscan.3.gz
  951. lib/perl5/site_perl/man/man3/Bio::Tools::Glimmer.3.gz
  952. lib/perl5/site_perl/man/man3/Bio::Tools::Grail.3.gz
  953. lib/perl5/site_perl/man/man3/Bio::Tools::GuessSeqFormat.3.gz
  954. lib/perl5/site_perl/man/man3/Bio::Tools::IUPAC.3.gz
  955. lib/perl5/site_perl/man/man3/Bio::Tools::Lucy.3.gz
  956. lib/perl5/site_perl/man/man3/Bio::Tools::MZEF.3.gz
  957. lib/perl5/site_perl/man/man3/Bio::Tools::Match.3.gz
  958. lib/perl5/site_perl/man/man3/Bio::Tools::OddCodes.3.gz
  959. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Gerp.3.gz
  960. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Molphy.3.gz
  961. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Molphy::Result.3.gz
  962. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Phylip::ProtDist.3.gz
  963. lib/perl5/site_perl/man/man3/Bio::Tools::Prediction::Exon.3.gz
  964. lib/perl5/site_perl/man/man3/Bio::Tools::Prediction::Gene.3.gz
  965. lib/perl5/site_perl/man/man3/Bio::Tools::Primer3.3.gz
  966. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Assessor::Base.3.gz
  967. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::AssessorI.3.gz
  968. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Feature.3.gz
  969. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Pair.3.gz
  970. lib/perl5/site_perl/man/man3/Bio::Tools::Prints.3.gz
  971. lib/perl5/site_perl/man/man3/Bio::Tools::Profile.3.gz
  972. lib/perl5/site_perl/man/man3/Bio::Tools::Promoterwise.3.gz
  973. lib/perl5/site_perl/man/man3/Bio::Tools::PrositeScan.3.gz
  974. lib/perl5/site_perl/man/man3/Bio::Tools::Pseudowise.3.gz
  975. lib/perl5/site_perl/man/man3/Bio::Tools::QRNA.3.gz
  976. lib/perl5/site_perl/man/man3/Bio::Tools::RandomDistFunctions.3.gz
  977. lib/perl5/site_perl/man/man3/Bio::Tools::RepeatMasker.3.gz
  978. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Analysis.3.gz
  979. lib/perl5/site_perl/man/man3/Bio::Tools::Run::AnalysisFactory.3.gz
  980. lib/perl5/site_perl/man/man3/Bio::Tools::Run::GenericParameters.3.gz
  981. lib/perl5/site_perl/man/man3/Bio::Tools::Run::ParametersI.3.gz
  982. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3.gz
  983. lib/perl5/site_perl/man/man3/Bio::Tools::Run::WrapperBase.3.gz
  984. lib/perl5/site_perl/man/man3/Bio::Tools::Run::WrapperBase::CommandExts.3.gz
  985. lib/perl5/site_perl/man/man3/Bio::Tools::Seg.3.gz
  986. lib/perl5/site_perl/man/man3/Bio::Tools::SeqPattern.3.gz
  987. lib/perl5/site_perl/man/man3/Bio::Tools::SeqPattern::Backtranslate.3.gz
  988. lib/perl5/site_perl/man/man3/Bio::Tools::SeqStats.3.gz
  989. lib/perl5/site_perl/man/man3/Bio::Tools::SeqWords.3.gz
  990. lib/perl5/site_perl/man/man3/Bio::Tools::Sigcleave.3.gz
  991. lib/perl5/site_perl/man/man3/Bio::Tools::Signalp.3.gz
  992. lib/perl5/site_perl/man/man3/Bio::Tools::Signalp::ExtendedSignalp.3.gz
  993. lib/perl5/site_perl/man/man3/Bio::Tools::Sim4::Exon.3.gz
  994. lib/perl5/site_perl/man/man3/Bio::Tools::Sim4::Results.3.gz
  995. lib/perl5/site_perl/man/man3/Bio::Tools::Spidey::Exon.3.gz
  996. lib/perl5/site_perl/man/man3/Bio::Tools::Spidey::Results.3.gz
  997. lib/perl5/site_perl/man/man3/Bio::Tools::TandemRepeatsFinder.3.gz
  998. lib/perl5/site_perl/man/man3/Bio::Tools::TargetP.3.gz
  999. lib/perl5/site_perl/man/man3/Bio::Tools::Tmhmm.3.gz
  1000. lib/perl5/site_perl/man/man3/Bio::Tools::ipcress.3.gz
  1001. lib/perl5/site_perl/man/man3/Bio::Tools::isPcr.3.gz
  1002. lib/perl5/site_perl/man/man3/Bio::Tools::pICalculator.3.gz
  1003. lib/perl5/site_perl/man/man3/Bio::Tools::tRNAscanSE.3.gz
  1004. lib/perl5/site_perl/man/man3/Bio::Tree::AnnotatableNode.3.gz
  1005. lib/perl5/site_perl/man/man3/Bio::Tree::Compatible.3.gz
  1006. lib/perl5/site_perl/man/man3/Bio::Tree::DistanceFactory.3.gz
  1007. lib/perl5/site_perl/man/man3/Bio::Tree::Node.3.gz
  1008. lib/perl5/site_perl/man/man3/Bio::Tree::NodeI.3.gz
  1009. lib/perl5/site_perl/man/man3/Bio::Tree::NodeNHX.3.gz
  1010. lib/perl5/site_perl/man/man3/Bio::Tree::RandomFactory.3.gz
  1011. lib/perl5/site_perl/man/man3/Bio::Tree::Statistics.3.gz
  1012. lib/perl5/site_perl/man/man3/Bio::Tree::Tree.3.gz
  1013. lib/perl5/site_perl/man/man3/Bio::Tree::TreeFunctionsI.3.gz
  1014. lib/perl5/site_perl/man/man3/Bio::Tree::TreeI.3.gz
  1015. lib/perl5/site_perl/man/man3/Bio::TreeIO.3.gz
  1016. lib/perl5/site_perl/man/man3/Bio::TreeIO::NewickParser.3.gz
  1017. lib/perl5/site_perl/man/man3/Bio::TreeIO::TreeEventBuilder.3.gz
  1018. lib/perl5/site_perl/man/man3/Bio::TreeIO::cluster.3.gz
  1019. lib/perl5/site_perl/man/man3/Bio::TreeIO::lintree.3.gz
  1020. lib/perl5/site_perl/man/man3/Bio::TreeIO::newick.3.gz
  1021. lib/perl5/site_perl/man/man3/Bio::TreeIO::nexus.3.gz
  1022. lib/perl5/site_perl/man/man3/Bio::TreeIO::nhx.3.gz
  1023. lib/perl5/site_perl/man/man3/Bio::TreeIO::pag.3.gz
  1024. lib/perl5/site_perl/man/man3/Bio::TreeIO::phyloxml.3.gz
  1025. lib/perl5/site_perl/man/man3/Bio::TreeIO::tabtree.3.gz
  1026. lib/perl5/site_perl/man/man3/Bio::UpdateableSeqI.3.gz
  1027. lib/perl5/site_perl/man/man3/Bio::WebAgent.3.gz
  1028. lib/perl5/site_perl/man/man3/BioPerl.3.gz
  1029. share/doc/BioPerl/AUTHORS
  1030. share/doc/BioPerl/Changes
  1031. share/doc/BioPerl/MANIFEST
  1032. share/doc/BioPerl/README.md
  1033. share/examples/BioPerl/Bio-DB-GFF/load_ucsc.pl
  1034. share/examples/BioPerl/align/FastAlign.pl
  1035. share/examples/BioPerl/align/align_on_codons.pl
  1036. share/examples/BioPerl/align/aligntutorial.pl
  1037. share/examples/BioPerl/align/simplealign.pl
  1038. share/examples/BioPerl/classify_hits_kingdom
  1039. share/examples/BioPerl/contributed/nmrpdb_parse.pl
  1040. share/examples/BioPerl/contributed/prosite2perl.pl
  1041. share/examples/BioPerl/contributed/rebase2list.pl
  1042. share/examples/BioPerl/db/est_tissue_query.pl
  1043. share/examples/BioPerl/db/get_seqs.pl
  1044. share/examples/BioPerl/db/rfetch.pl
  1045. share/examples/BioPerl/db/use_registry.pl
  1046. share/examples/BioPerl/generate_random_seq.pl
  1047. share/examples/BioPerl/longorf.pl
  1048. share/examples/BioPerl/make_primers.pl
  1049. share/examples/BioPerl/quality/svgtrace.pl
  1050. share/examples/BioPerl/rev_and_trans.pl
  1051. share/examples/BioPerl/revcom_dir.pl
  1052. share/examples/BioPerl/root/README
  1053. share/examples/BioPerl/root/exceptions1.pl
  1054. share/examples/BioPerl/root/exceptions2.pl
  1055. share/examples/BioPerl/root/exceptions3.pl
  1056. share/examples/BioPerl/root/exceptions4.pl
  1057. share/examples/BioPerl/searchio/blast_example.pl
  1058. share/examples/BioPerl/searchio/custom_writer.pl
  1059. share/examples/BioPerl/searchio/hitwriter.pl
  1060. share/examples/BioPerl/searchio/hspwriter.pl
  1061. share/examples/BioPerl/searchio/htmlwriter.pl
  1062. share/examples/BioPerl/searchio/psiblast_features.pl
  1063. share/examples/BioPerl/searchio/psiblast_iterations.pl
  1064. share/examples/BioPerl/searchio/rawwriter.pl
  1065. share/examples/BioPerl/searchio/resultwriter.pl
  1066. share/examples/BioPerl/searchio/waba2gff.pl
  1067. share/examples/BioPerl/searchio/waba2gff3.pl
  1068. share/examples/BioPerl/tk/gsequence.pl
  1069. share/examples/BioPerl/tk/hitdisplay.pl
  1070. share/examples/BioPerl/tools/extract_genes.pl
  1071. share/examples/BioPerl/tools/gb_to_gff.pl
  1072. share/examples/BioPerl/tools/gff2ps.pl
  1073. share/examples/BioPerl/tools/parse_codeml.pl
  1074. share/examples/BioPerl/tools/reverse-translate.pl
  1075. share/examples/BioPerl/tools/run_genscan.pl
  1076. share/examples/BioPerl/tools/run_primer3.pl
  1077. share/examples/BioPerl/tools/seq_pattern.pl
  1078. share/examples/BioPerl/tools/standaloneblast.pl
  1079. share/examples/BioPerl/tree/paup2phylip.pl
  1080. @owner
  1081. @group
  1082. @mode
Collapse this list.
Dependency lines:
  • p5-BioPerl>0:biology/p5-BioPerl
To install the port: cd /usr/ports/biology/p5-BioPerl/ && make install clean
To add the package: pkg install p5-BioPerl
PKGNAME: p5-BioPerl
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
p5-BioPerl
ABIlatestquarterly
FreeBSD:11:aarch641.0070021.007007_1
FreeBSD:11:amd641.007007_11.007007_1
FreeBSD:11:armv6-1.007007_1
FreeBSD:11:i3861.007007_11.007007_1
FreeBSD:11:mips-1.007007_1
FreeBSD:11:mips64-1.007007_1
FreeBSD:12:aarch641.0070021.007007_1
FreeBSD:12:amd641.007007_11.007007_1
FreeBSD:12:armv61.0070021.007007_1
FreeBSD:12:armv71.0070021.007007_1
FreeBSD:12:i3861.007007_11.007007_1
FreeBSD:12:mips-1.007007_1
FreeBSD:12:mips64-1.007007_1
FreeBSD:12:powerpc64-1.007007_1
FreeBSD:13:aarch641.007007_1-
FreeBSD:13:amd641.007007_1-
FreeBSD:13:armv61.007007-
FreeBSD:13:armv7--
FreeBSD:13:i3861.007007_1-
FreeBSD:13:mips1.007007-
FreeBSD:13:mips641.007007_1-
FreeBSD:13:powerpc641.007007_1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Data-Stag>=0 : devel/p5-Data-Stag
  2. p5-Error>=0 : lang/p5-Error
  3. p5-Graph>=0 : math/p5-Graph
  4. p5-HTTP-Message>=0 : www/p5-HTTP-Message
  5. p5-IO-String>=0 : devel/p5-IO-String
  6. p5-IO-Stringy>=0 : devel/p5-IO-Stringy
  7. p5-IPC-Run>=0 : devel/p5-IPC-Run
  8. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  9. p5-Module-Build>=0 : devel/p5-Module-Build
  10. p5-Set-Scalar>=0 : devel/p5-Set-Scalar
  11. p5-Test-Most>=0 : devel/p5-Test-Most
  12. p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet
  13. p5-URI>=0 : net/p5-URI
  14. p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
  15. p5-XML-DOM>=0 : textproc/p5-XML-DOM
  16. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  17. p5-XML-SAX-Base>=0 : textproc/p5-XML-SAX-Base
  18. p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
  19. p5-XML-SAX>=0 : textproc/p5-XML-SAX
  20. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  21. p5-XML-Writer>=0 : textproc/p5-XML-Writer
  22. p5-YAML>=0 : textproc/p5-YAML
  23. p5-libwww>=0 : www/p5-libwww
  24. p5-libxml>=0 : textproc/p5-libxml
  25. perl5>=5.30.r1<5.31 : lang/perl5.30
  26. perl5>=5.30.r1<5.31 : lang/perl5.30
Runtime dependencies:
  1. p5-Data-Stag>=0 : devel/p5-Data-Stag
  2. p5-Error>=0 : lang/p5-Error
  3. p5-Graph>=0 : math/p5-Graph
  4. p5-HTTP-Message>=0 : www/p5-HTTP-Message
  5. p5-IO-String>=0 : devel/p5-IO-String
  6. p5-IO-Stringy>=0 : devel/p5-IO-Stringy
  7. p5-IPC-Run>=0 : devel/p5-IPC-Run
  8. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  9. p5-Module-Build>=0 : devel/p5-Module-Build
  10. p5-Set-Scalar>=0 : devel/p5-Set-Scalar
  11. p5-Test-Most>=0 : devel/p5-Test-Most
  12. p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet
  13. p5-URI>=0 : net/p5-URI
  14. p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
  15. p5-XML-DOM>=0 : textproc/p5-XML-DOM
  16. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  17. p5-XML-SAX-Base>=0 : textproc/p5-XML-SAX-Base
  18. p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
  19. p5-XML-SAX>=0 : textproc/p5-XML-SAX
  20. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  21. p5-XML-Writer>=0 : textproc/p5-XML-Writer
  22. p5-YAML>=0 : textproc/p5-YAML
  23. p5-libwww>=0 : www/p5-libwww
  24. p5-libxml>=0 : textproc/p5-libxml
  25. perl5>=5.30.r1<5.31 : lang/perl5.30
This port is required by:
for Build
  1. biology/p5-Bio-ASN1-EntrezGene
  2. biology/p5-Bio-Cluster
  3. biology/p5-Bio-Coordinate
  4. biology/p5-Bio-DB-EMBL
  5. biology/p5-Bio-DB-NCBIHelper
  6. biology/p5-Bio-Das
  7. biology/p5-Bio-FeatureIO
Expand this list (11 items / 4 hidden)
  1. biology/p5-Bio-Graphics
  2. biology/p5-Bio-Phylo
  3. biology/p5-Bio-Variation
  4. biology/p5-BioPerl-Run
  5. Collapse this list.
for Run
  1. biology/p5-Bio-ASN1-EntrezGene
  2. biology/p5-Bio-Cluster
  3. biology/p5-Bio-Coordinate
  4. biology/p5-Bio-DB-EMBL
  5. biology/p5-Bio-DB-NCBIHelper
  6. biology/p5-Bio-Das
  7. biology/p5-Bio-FeatureIO
Expand this list (11 items / 4 hidden)
  1. biology/p5-Bio-Graphics
  2. biology/p5-Bio-Phylo
  3. biology/p5-Bio-Variation
  4. biology/p5-BioPerl-Run
  5. Collapse this list.

Configuration Options

USES:

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  2. ftp://ftp.cpan.org/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/BioPerl/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/authors/id/C/CJ/CJFIELDS/
  7. http://backpan.perl.org/authors/id/C/CJ/CJFIELDS/
  8. http://ftp.jaist.ac.jp/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/authors/id/C/CJ/CJFIELDS/
  10. https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/
  11. https://cpan.metacpan.org/modules/by-module/BioPerl/
  12. https://www.cpan.org/authors/id/C/CJ/CJFIELDS/
Port Moves
  • port moved here from biology/p5-bioperl on 2016-12-18
    REASON: Rename to match upstream naming

Number of commits found: 15

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Jun 2020 11:55:23
Original commit files touched by this commit  1.007007_1
Revision:540492
sunpoet search for other commits by this committer
Move devel/p5-IO-stringy to devel/p5-IO-Stringy and update to 2.113

- Fix LICENSE_FILE
- Update pkg-descr
- Update WWW
- Bump PORTREVISION of dependent ports for dependency change

Changes:	https://metacpan.org/changes/distribution/IO-Stringy
08 Dec 2019 16:57:24
Original commit files touched by this commit  1.007007
Revision:519356
sunpoet search for other commits by this committer
Update to 1.007007 (1.7.7)

Changes:	https://metacpan.org/changes/distribution/BioPerl
07 Sep 2019 22:44:02
Original commit files touched by this commit  1.007006
Revision:511437
sunpoet search for other commits by this committer
Update to 1.007006 (1.7.6)

- Remove PGTEST and SQLITETEST options: DBD::Pg and DBD::SQLite have been
removed from BioPerl by upstream for the move of modules and programs into
separate distributions

Changes:	https://metacpan.org/changes/distribution/BioPerl
11 Aug 2019 16:49:24
Original commit files touched by this commit  1.007005_1
Revision:508637
sunpoet search for other commits by this committer
Update to 1.007005 (1.7.5)

- Fix DISTNAME
- Bump PORTREVISION for package change

Changes:	https://metacpan.org/changes/distribution/BioPerl
11 Aug 2019 11:28:17
Original commit files touched by this commit  1.007005
Revision:508608
sunpoet search for other commits by this committer
Update WWW
22 Feb 2019 19:54:12
Original commit files touched by this commit  1.007005
Revision:493589
sunpoet search for other commits by this committer
Update to 1.007005 (1.7.5)

Changes:	https://metacpan.org/changes/distribution/BioPerl
20 Feb 2019 20:46:53
Original commit files touched by this commit  1.007004
Revision:493447
sunpoet search for other commits by this committer
Update to 1.007004 (1.7.4)

- Add LICENSE_FILE
- Use USES=shebangfix
- Use COPYTREE_SHARE instead of CP -R
- Take maintainership

Changes:	https://metacpan.org/changes/distribution/BioPerl
06 Oct 2018 13:06:45
Original commit files touched by this commit  1.007002
Revision:481365
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
15 Sep 2017 08:58:50
Original commit files touched by this commit  1.007002
Revision:449893
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
13 Sep 2017 01:45:35
Original commit files touched by this commit  1.007002
Revision:449746
wen search for other commits by this committer
- Update to 1.007002
Changes: http://search.cpan.org/src/CJFIELDS/BioPerl-1.007002/Changes
01 Jun 2017 23:50:33
Original commit files touched by this commit  1.007001_2
Revision:442335
sunpoet search for other commits by this committer
Remove outdated PERL_LEVEL check
22 Apr 2017 12:45:43
Original commit files touched by this commit  1.007001_2
Revision:439170
miwi search for other commits by this committer
- Fix shebangs
31 Jan 2017 16:21:46
Original commit files touched by this commit  1.007001_1
Revision:432932
mat search for other commits by this committer
Bump PORTREVISION for ports affected by the fix the last commit.

Done with:	Tools/scripts/bump-revision.sh
Sponsored by:	Absolight
19 Dec 2016 15:54:29
Original commit files touched by this commit  1.007001
Revision:428940
sunpoet search for other commits by this committer
- Update to 1.007001
- Update *_DEPENDS
- Use TEST_DEPENDS: Test::Most and URI::Escape are test-only dependencies
- Use PORTDATA, PORTDOCS and PORTEXAMPLES

Changes:	http://search.cpan.org/dist/BioPerl/Changes
18 Dec 2016 15:25:04
Original commit files touched by this commit  1.6.924_5
Revision:428868
sunpoet search for other commits by this committer
- Move biology/p5-bioperl to biology/p5-BioPerl
- Sort *_DEPENDS
- Bump PORTREVISION for dependent ports

Number of commits found: 15

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