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Port details
p5-BioPerl-Run Wrapper modules for common bioinformatics tools
1.007003 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.007003Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-12-18 15:29:01
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (211 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/catalog.mk
  2. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/LICENSE
  3. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/ART10
  4. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/GPLv1+
  5. bin/bp_multi_hmmsearch
  6. bin/bp_panalysis
  7. bin/bp_papplmaker
  8. bin/bp_run_neighbor
  9. bin/bp_run_protdist
  10. lib/perl5/site_perl/Bio/DB/ESoap.pm
  11. lib/perl5/site_perl/Bio/DB/ESoap/WSDL.pm
  12. lib/perl5/site_perl/Bio/DB/SoapEUtilities.pm
  13. lib/perl5/site_perl/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
  14. lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor.pm
  15. lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
  16. lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
  17. lib/perl5/site_perl/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
  18. lib/perl5/site_perl/Bio/DB/SoapEUtilities/LinkAdaptor.pm
  19. lib/perl5/site_perl/Bio/DB/SoapEUtilities/Result.pm
  20. lib/perl5/site_perl/Bio/Factory/EMBOSS.pm
  21. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Amap.pm
  22. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Blat.pm
  23. lib/perl5/site_perl/Bio/Tools/Run/Alignment/DBA.pm
  24. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Exonerate.pm
  25. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Gmap.pm
  26. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Kalign.pm
  27. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Lagan.pm
  28. lib/perl5/site_perl/Bio/Tools/Run/Alignment/MAFFT.pm
  29. lib/perl5/site_perl/Bio/Tools/Run/Alignment/MSAProbs.pm
  30. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Muscle.pm
  31. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Pal2Nal.pm
  32. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Probalign.pm
  33. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Probcons.pm
  34. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Proda.pm
  35. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Sim4.pm
  36. lib/perl5/site_perl/Bio/Tools/Run/Alignment/StandAloneFasta.pm
  37. lib/perl5/site_perl/Bio/Tools/Run/Analysis/soap.pm
  38. lib/perl5/site_perl/Bio/Tools/Run/AnalysisFactory/soap.pm
  39. lib/perl5/site_perl/Bio/Tools/Run/BEDTools.pm
  40. lib/perl5/site_perl/Bio/Tools/Run/BEDTools/Config.pm
  41. lib/perl5/site_perl/Bio/Tools/Run/BlastPlus.pm
  42. lib/perl5/site_perl/Bio/Tools/Run/BlastPlus/Config.pm
  43. lib/perl5/site_perl/Bio/Tools/Run/Coil.pm
  44. lib/perl5/site_perl/Bio/Tools/Run/EMBOSSApplication.pm
  45. lib/perl5/site_perl/Bio/Tools/Run/EMBOSSacd.pm
  46. lib/perl5/site_perl/Bio/Tools/Run/ERPIN.pm
  47. lib/perl5/site_perl/Bio/Tools/Run/Ensembl.pm
  48. lib/perl5/site_perl/Bio/Tools/Run/Eponine.pm
  49. lib/perl5/site_perl/Bio/Tools/Run/FootPrinter.pm
  50. lib/perl5/site_perl/Bio/Tools/Run/Genemark.pm
  51. lib/perl5/site_perl/Bio/Tools/Run/Genewise.pm
  52. lib/perl5/site_perl/Bio/Tools/Run/Genscan.pm
  53. lib/perl5/site_perl/Bio/Tools/Run/Glimmer.pm
  54. lib/perl5/site_perl/Bio/Tools/Run/Hmmer.pm
  55. lib/perl5/site_perl/Bio/Tools/Run/Infernal.pm
  56. lib/perl5/site_perl/Bio/Tools/Run/MCS.pm
  57. lib/perl5/site_perl/Bio/Tools/Run/Match.pm
  58. lib/perl5/site_perl/Bio/Tools/Run/Mdust.pm
  59. lib/perl5/site_perl/Bio/Tools/Run/Phylo/FastTree.pm
  60. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Gerp.pm
  61. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/Base.pm
  62. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm
  63. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
  64. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
  65. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/REL.pm
  66. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
  67. lib/perl5/site_perl/Bio/Tools/Run/Phylo/LVB.pm
  68. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
  69. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Njtree/Best.pm
  70. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
  71. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
  72. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Base.pm
  73. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Consense.pm
  74. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
  75. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
  76. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
  77. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
  78. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
  79. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
  80. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
  81. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phyml.pm
  82. lib/perl5/site_perl/Bio/Tools/Run/Phylo/QuickTree.pm
  83. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Raxml.pm
  84. lib/perl5/site_perl/Bio/Tools/Run/Phylo/SLR.pm
  85. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Semphy.pm
  86. lib/perl5/site_perl/Bio/Tools/Run/Primate.pm
  87. lib/perl5/site_perl/Bio/Tools/Run/Primer3.pm
  88. lib/perl5/site_perl/Bio/Tools/Run/Prints.pm
  89. lib/perl5/site_perl/Bio/Tools/Run/Profile.pm
  90. lib/perl5/site_perl/Bio/Tools/Run/Promoterwise.pm
  91. lib/perl5/site_perl/Bio/Tools/Run/Pseudowise.pm
  92. lib/perl5/site_perl/Bio/Tools/Run/RNAMotif.pm
  93. lib/perl5/site_perl/Bio/Tools/Run/RepeatMasker.pm
  94. lib/perl5/site_perl/Bio/Tools/Run/Samtools.pm
  95. lib/perl5/site_perl/Bio/Tools/Run/Samtools/Config.pm
  96. lib/perl5/site_perl/Bio/Tools/Run/Seg.pm
  97. lib/perl5/site_perl/Bio/Tools/Run/Signalp.pm
  98. lib/perl5/site_perl/Bio/Tools/Run/Simprot.pm
  99. lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlast.pm
  100. lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlastPlus.pm
  101. lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm
  102. lib/perl5/site_perl/Bio/Tools/Run/StandAloneNCBIBlast.pm
  103. lib/perl5/site_perl/Bio/Tools/Run/StandAloneWUBlast.pm
  104. lib/perl5/site_perl/Bio/Tools/Run/Tmhmm.pm
  105. lib/perl5/site_perl/Bio/Tools/Run/TribeMCL.pm
  106. lib/perl5/site_perl/Bio/Tools/Run/Vista.pm
  107. lib/perl5/site_perl/Bio/Tools/Run/tRNAscanSE.pm
  108. lib/perl5/site_perl/man/man3/Bio::DB::ESoap.3.gz
  109. lib/perl5/site_perl/man/man3/Bio::DB::ESoap::WSDL.3.gz
  110. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities.3.gz
  111. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::DocSumAdaptor.3.gz
  112. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor.3.gz
  113. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3.gz
  114. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::species.3.gz
  115. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::GQueryAdaptor.3.gz
  116. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::LinkAdaptor.3.gz
  117. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::Result.3.gz
  118. lib/perl5/site_perl/man/man3/Bio::Factory::EMBOSS.3.gz
  119. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Amap.3.gz
  120. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Blat.3.gz
  121. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::DBA.3.gz
  122. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Exonerate.3.gz
  123. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Gmap.3.gz
  124. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Kalign.3.gz
  125. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Lagan.3.gz
  126. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::MAFFT.3.gz
  127. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::MSAProbs.3.gz
  128. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Muscle.3.gz
  129. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Pal2Nal.3.gz
  130. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Probalign.3.gz
  131. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Probcons.3.gz
  132. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Proda.3.gz
  133. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Sim4.3.gz
  134. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::StandAloneFasta.3.gz
  135. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Analysis::soap.3.gz
  136. lib/perl5/site_perl/man/man3/Bio::Tools::Run::AnalysisFactory::soap.3.gz
  137. lib/perl5/site_perl/man/man3/Bio::Tools::Run::BEDTools.3.gz
  138. lib/perl5/site_perl/man/man3/Bio::Tools::Run::BEDTools::Config.3.gz
  139. lib/perl5/site_perl/man/man3/Bio::Tools::Run::BlastPlus.3.gz
  140. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Coil.3.gz
  141. lib/perl5/site_perl/man/man3/Bio::Tools::Run::EMBOSSApplication.3.gz
  142. lib/perl5/site_perl/man/man3/Bio::Tools::Run::EMBOSSacd.3.gz
  143. lib/perl5/site_perl/man/man3/Bio::Tools::Run::ERPIN.3.gz
  144. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Ensembl.3.gz
  145. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Eponine.3.gz
  146. lib/perl5/site_perl/man/man3/Bio::Tools::Run::FootPrinter.3.gz
  147. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genemark.3.gz
  148. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genewise.3.gz
  149. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genscan.3.gz
  150. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Glimmer.3.gz
  151. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Hmmer.3.gz
  152. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Infernal.3.gz
  153. lib/perl5/site_perl/man/man3/Bio::Tools::Run::MCS.3.gz
  154. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Match.3.gz
  155. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Mdust.3.gz
  156. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::FastTree.3.gz
  157. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Gerp.3.gz
  158. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::Base.3.gz
  159. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::BatchFile.3.gz
  160. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::FEL.3.gz
  161. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3.gz
  162. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::REL.3.gz
  163. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::SLAC.3.gz
  164. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::LVB.3.gz
  165. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Molphy::ProtML.3.gz
  166. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Njtree::Best.3.gz
  167. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phast::PhastCons.3.gz
  168. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3.gz
  169. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Base.3.gz
  170. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Consense.3.gz
  171. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawGram.3.gz
  172. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawTree.3.gz
  173. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3.gz
  174. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3.gz
  175. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3.gz
  176. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3.gz
  177. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3.gz
  178. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phyml.3.gz
  179. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::QuickTree.3.gz
  180. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Raxml.3.gz
  181. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::SLR.3.gz
  182. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Semphy.3.gz
  183. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Primate.3.gz
  184. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Primer3.3.gz
  185. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Prints.3.gz
  186. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Profile.3.gz
  187. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Promoterwise.3.gz
  188. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Pseudowise.3.gz
  189. lib/perl5/site_perl/man/man3/Bio::Tools::Run::RNAMotif.3.gz
  190. lib/perl5/site_perl/man/man3/Bio::Tools::Run::RepeatMasker.3.gz
  191. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Samtools.3.gz
  192. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Samtools::Config.3.gz
  193. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Seg.3.gz
  194. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Signalp.3.gz
  195. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Simprot.3.gz
  196. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlast.3.gz
  197. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3.gz
  198. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlastPlus::BlastMethods.3.gz
  199. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneNCBIBlast.3.gz
  200. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneWUBlast.3.gz
  201. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Tmhmm.3.gz
  202. lib/perl5/site_perl/man/man3/Bio::Tools::Run::TribeMCL.3.gz
  203. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Vista.3.gz
  204. lib/perl5/site_perl/man/man3/Bio::Tools::Run::tRNAscanSE.3.gz
  205. share/doc/BioPerl-Run/AUTHORS
  206. share/doc/BioPerl-Run/Changes
  207. share/doc/BioPerl-Run/INSTALL.PROGRAMS
  208. share/doc/BioPerl-Run/README.md
  209. @owner
  210. @group
  211. @mode
Collapse this list.
Dependency lines:
  • p5-BioPerl-Run>0:biology/p5-BioPerl-Run
To install the port:
cd /usr/ports/biology/p5-BioPerl-Run/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-BioPerl-Run
  • pkg install p5-BioPerl-Run
PKGNAME: p5-BioPerl-Run
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
p5-BioPerl-Run
ABIlatestquarterly
FreeBSD:11:aarch641.0070021.007003
FreeBSD:11:amd641.0070031.007003
FreeBSD:11:armv6-1.007003
FreeBSD:11:i3861.0070031.007003
FreeBSD:11:mips--
FreeBSD:11:mips64-1.007003
FreeBSD:12:aarch641.0070021.007003
FreeBSD:12:amd641.0070031.007003
FreeBSD:12:armv61.0070021.007003
FreeBSD:12:armv71.0070021.007003
FreeBSD:12:i3861.0070031.007003
FreeBSD:12:mips--
FreeBSD:12:mips64-1.007003
FreeBSD:12:powerpc64-1.007003
FreeBSD:13:aarch641.0070031.007003
FreeBSD:13:amd641.0070031.007003
FreeBSD:13:armv61.0070031.007003
FreeBSD:13:armv71.0070031.007003
FreeBSD:13:i3861.0070031.007003
FreeBSD:13:mips--
FreeBSD:13:mips641.0070031.007003
FreeBSD:13:powerpc641.0070031.007003
FreeBSD:14:aarch641.007003-
FreeBSD:14:amd641.007003-
FreeBSD:14:armv61.007003-
FreeBSD:14:armv71.007003-
FreeBSD:14:i3861.007003-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.007003-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
  2. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  3. p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
  4. p5-BioPerl>=1.007000 : biology/p5-BioPerl
  5. p5-Config-Any>=0 : devel/p5-Config-Any
  6. p5-File-Sort>=0 : misc/p5-File-Sort
  7. p5-IO-String>=0 : devel/p5-IO-String
  8. p5-IPC-Run>=0 : devel/p5-IPC-Run
  9. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  10. perl5>=5.32.r0<5.33 : lang/perl5.32
  11. p5-Module-Build>=0.4206 : devel/p5-Module-Build
  12. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
  2. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  3. p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
  4. p5-BioPerl>=1.007000 : biology/p5-BioPerl
  5. p5-Config-Any>=0 : devel/p5-Config-Any
  6. p5-File-Sort>=0 : misc/p5-File-Sort
  7. p5-IO-String>=0 : devel/p5-IO-String
  8. p5-IPC-Run>=0 : devel/p5-IPC-Run
  9. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  10. perl5>=5.32.r0<5.33 : lang/perl5.32
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (13 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  2. ftp://ftp.cpan.org/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/BioPerl/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/authors/id/C/CJ/CJFIELDS/
  7. http://backpan.perl.org/authors/id/C/CJ/CJFIELDS/
  8. http://ftp.jaist.ac.jp/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/authors/id/C/CJ/CJFIELDS/
  10. https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/
  11. https://cpan.metacpan.org/modules/by-module/BioPerl/
  12. https://www.cpan.org/authors/id/C/CJ/CJFIELDS/
Collapse this list.
Port Moves

Number of commits found: 10

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.007003
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
08 Jan 2020 18:36:40
Original commit files touched by this commit Revision:522441  1.007003
sunpoet search for other commits by this committer
Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over 3
years ago
20 Feb 2019 20:46:59
Original commit files touched by this commit Revision:493448  1.007003
sunpoet search for other commits by this committer
Update to 1.007003

- Take maintainership

Changes:	https://metacpan.org/changes/distribution/BioPerl-Run
06 Oct 2018 13:06:45
Original commit files touched by this commit Revision:481365  1.007002
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
15 Sep 2017 19:17:44
Original commit files touched by this commit Revision:449927  1.007002
sunpoet search for other commits by this committer
Update to 1.007002

Changes:	http://search.cpan.org/dist/BioPerl-Run/Changes
15 Sep 2017 08:58:50
Original commit files touched by this commit Revision:449893  1.007001_1
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
31 Jan 2017 16:21:46
Original commit files touched by this commit Revision:432932  1.007001_1
mat search for other commits by this committer
Bump PORTREVISION for ports affected by the fix the last commit.

Done with:	Tools/scripts/bump-revision.sh
Sponsored by:	Absolight
20 Dec 2016 18:35:26
Original commit files touched by this commit Revision:429017  1.007001
sunpoet search for other commits by this committer
- Update to 1.007001

Changes:	http://search.cpan.org/dist/BioPerl-Run/Changes
19 Dec 2016 15:54:34
Original commit files touched by this commit Revision:428941  1.007000
sunpoet search for other commits by this committer
- Update to 1.007000
- Change MASTER_SITES back to CPAN
- Update LICENSE
- Add LICENSE_FILE
- Use PORTDOCS
- Convert to options target helper
- Use INSTALL_SCRIPT
- Pet portlint: fix diff header of patch file

Changes:	http://search.cpan.org/dist/BioPerl-Run/Changes
18 Dec 2016 15:25:44
Original commit files touched by this commit Revision:428872  1.6.901_2
sunpoet search for other commits by this committer
- Move biology/p5-bioperl-run to biology/p5-BioPerl-Run
- Sort *_DEPENDS
- Add NO_ARCH
- Bump PORTREVISION for biology/p5-bioperl renaming

Number of commits found: 10