| Port details |
- p5-BioPerl-Run Wrapper modules for common bioinformatics tools
- 1.007003 biology
 =0      1.007003Version of this port present on the latest quarterly branch. - Maintainer: sunpoet@FreeBSD.org
- Port Added: 2016-12-18 15:29:01
- Last Update: 2021-04-06 14:31:07
- Commit Hash: 305f148
- Also Listed In: perl5
- License: ART10 GPLv1+
- Description:
- Bioperl-run contain modules that provides a PERL interface to various
bioinformatics applications. This allows various applications to be used
with common Bioperl objects.
WWW: https://github.com/bioperl/bioperl-run
- SVNWeb : git : Homepage
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-BioPerl-Run>0:biology/p5-BioPerl-Run
- To install the port:
- cd /usr/ports/biology/p5-BioPerl-Run/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-BioPerl-Run
- pkg install p5-BioPerl-Run
- PKGNAME: p5-BioPerl-Run
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1549711722
SHA256 (BioPerl-Run-1.007003.tar.gz) = e62e529352f0644bc26509065595d0a47fb6217e5f1301acad76182c2f062071
SIZE (BioPerl-Run-1.007003.tar.gz) = 5138162
- Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
- p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
- p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
- p5-BioPerl>=1.007000 : biology/p5-BioPerl
- p5-Config-Any>=0 : devel/p5-Config-Any
- p5-File-Sort>=0 : misc/p5-File-Sort
- p5-IO-String>=0 : devel/p5-IO-String
- p5-IPC-Run>=0 : devel/p5-IPC-Run
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- perl5>=5.32.r0<5.33 : lang/perl5.32
- p5-Module-Build>=0.4206 : devel/p5-Module-Build
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
- p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
- p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
- p5-BioPerl>=1.007000 : biology/p5-BioPerl
- p5-Config-Any>=0 : devel/p5-Config-Any
- p5-File-Sort>=0 : misc/p5-File-Sort
- p5-IO-String>=0 : devel/p5-IO-String
- p5-IPC-Run>=0 : devel/p5-IPC-Run
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
- Configuration Options:
- ===> The following configuration options are available for p5-BioPerl-Run-1.007003:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- biology_p5-BioPerl-Run
- USES:
- perl5 shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 10
| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Date | By | Description |
|---|
06 Apr 2021 14:31:07
  1.007003
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
08 Jan 2020 18:36:40
  1.007003
|
sunpoet |
Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over 3
years ago |
20 Feb 2019 20:46:59
1.007003
|
sunpoet |
Update to 1.007003
- Take maintainership
Changes: https://metacpan.org/changes/distribution/BioPerl-Run |
06 Oct 2018 13:06:45
1.007002
|
des |
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.
Approved by: portmgr (adamw) |
15 Sep 2017 19:17:44
1.007002
|
sunpoet |
Update to 1.007002
Changes: http://search.cpan.org/dist/BioPerl-Run/Changes |
15 Sep 2017 08:58:50
1.007001_1
|
mat |
Fix license information for portgs that use "the same license as Perl".
Sponsored by: Absolight |
31 Jan 2017 16:21:46
1.007001_1
|
mat |
Bump PORTREVISION for ports affected by the fix the last commit.
Done with: Tools/scripts/bump-revision.sh
Sponsored by: Absolight |
20 Dec 2016 18:35:26
1.007001
|
sunpoet |
- Update to 1.007001
Changes: http://search.cpan.org/dist/BioPerl-Run/Changes |
19 Dec 2016 15:54:34
1.007000
|
sunpoet |
- Update to 1.007000
- Change MASTER_SITES back to CPAN
- Update LICENSE
- Add LICENSE_FILE
- Use PORTDOCS
- Convert to options target helper
- Use INSTALL_SCRIPT
- Pet portlint: fix diff header of patch file
Changes: http://search.cpan.org/dist/BioPerl-Run/Changes |
18 Dec 2016 15:25:44
1.6.901_2
|
sunpoet |
- Move biology/p5-bioperl-run to biology/p5-BioPerl-Run
- Sort *_DEPENDS
- Add NO_ARCH
- Bump PORTREVISION for biology/p5-bioperl renaming |
Number of commits found: 10
|
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