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Port details
p5-Bio-Cluster BioPerl cluster modules
1.7.3_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.7.3_1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-20 20:47:05
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (27 items)
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  1. /usr/local/share/licenses/p5-Bio-Cluster-1.7.3_1/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-Cluster-1.7.3_1/LICENSE
  3. /usr/local/share/licenses/p5-Bio-Cluster-1.7.3_1/ART10
  4. /usr/local/share/licenses/p5-Bio-Cluster-1.7.3_1/GPLv1+
  5. lib/perl5/site_perl/Bio/Cluster.pm
  6. lib/perl5/site_perl/Bio/Cluster/ClusterFactory.pm
  7. lib/perl5/site_perl/Bio/Cluster/FamilyI.pm
  8. lib/perl5/site_perl/Bio/Cluster/SequenceFamily.pm
  9. lib/perl5/site_perl/Bio/Cluster/UniGene.pm
  10. lib/perl5/site_perl/Bio/Cluster/UniGeneI.pm
  11. lib/perl5/site_perl/Bio/ClusterI.pm
  12. lib/perl5/site_perl/Bio/ClusterIO.pm
  13. lib/perl5/site_perl/Bio/ClusterIO/dbsnp.pm
  14. lib/perl5/site_perl/Bio/ClusterIO/unigene.pm
  15. lib/perl5/site_perl/man/man3/Bio::Cluster.3.gz
  16. lib/perl5/site_perl/man/man3/Bio::Cluster::ClusterFactory.3.gz
  17. lib/perl5/site_perl/man/man3/Bio::Cluster::FamilyI.3.gz
  18. lib/perl5/site_perl/man/man3/Bio::Cluster::SequenceFamily.3.gz
  19. lib/perl5/site_perl/man/man3/Bio::Cluster::UniGene.3.gz
  20. lib/perl5/site_perl/man/man3/Bio::Cluster::UniGeneI.3.gz
  21. lib/perl5/site_perl/man/man3/Bio::ClusterI.3.gz
  22. lib/perl5/site_perl/man/man3/Bio::ClusterIO.3.gz
  23. lib/perl5/site_perl/man/man3/Bio::ClusterIO::dbsnp.3.gz
  24. lib/perl5/site_perl/man/man3/Bio::ClusterIO::unigene.3.gz
  25. @owner
  26. @group
  27. @mode
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Dependency lines:
  • p5-Bio-Cluster>0:biology/p5-Bio-Cluster
To install the port:
cd /usr/ports/biology/p5-Bio-Cluster/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-Bio-Cluster
  • pkg install p5-Bio-Cluster
PKGNAME: p5-Bio-Cluster
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
p5-Bio-Cluster
ABIlatestquarterly
FreeBSD:11:aarch64-1.7.3_1
FreeBSD:11:amd641.7.3_11.7.3_1
FreeBSD:11:armv6-1.7.3_1
FreeBSD:11:i3861.7.3_11.7.3_1
FreeBSD:11:mips--
FreeBSD:11:mips64-1.7.3_1
FreeBSD:12:aarch64-1.7.3_1
FreeBSD:12:amd641.7.3_11.7.3_1
FreeBSD:12:armv6-1.7.3_1
FreeBSD:12:armv7-1.7.3_1
FreeBSD:12:i3861.7.3_11.7.3_1
FreeBSD:12:mips--
FreeBSD:12:mips64-1.7.3_1
FreeBSD:12:powerpc64-1.7.3_1
FreeBSD:13:aarch641.7.3_11.7.3_1
FreeBSD:13:amd641.7.3_11.7.3_1
FreeBSD:13:armv61.7.3_11.7.3_1
FreeBSD:13:armv71.7.3_11.7.3_1
FreeBSD:13:i3861.7.3_11.7.3_1
FreeBSD:13:mips--
FreeBSD:13:mips641.7.3_11.7.3_1
FreeBSD:13:powerpc641.7.3_11.7.3_1
FreeBSD:14:aarch641.7.3_1-
FreeBSD:14:amd641.7.3_1-
FreeBSD:14:armv61.7.3_1-
FreeBSD:14:armv71.7.3_1-
FreeBSD:14:i3861.7.3_1-
FreeBSD:14:mips--
FreeBSD:14:mips641.7.3_1-
FreeBSD:14:powerpc641.7.3_1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Bio-Variation>=0 : biology/p5-Bio-Variation
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. p5-XML-SAX>=0 : textproc/p5-XML-SAX
  4. perl5>=5.32.r0<5.33 : lang/perl5.32
  5. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Bio-Variation>=0 : biology/p5-Bio-Variation
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. p5-XML-SAX>=0 : textproc/p5-XML-SAX
  4. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Build
  1. biology/p5-Bio-ASN1-EntrezGene
  2. biology/p5-BioPerl-Run
for Run
  1. biology/p5-Bio-ASN1-EntrezGene
  2. biology/p5-BioPerl-Run

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/
Collapse this list.

Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.7.3_1
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
08 Dec 2019 16:57:19
Original commit files touched by this commit Revision:519355  1.7.3_1
sunpoet search for other commits by this committer
Update *_DEPENDS

- Bump PORTREVISION for dependency change
20 Feb 2019 20:46:37
Original commit files touched by this commit Revision:493444  1.7.3
sunpoet search for other commits by this committer
Add p5-Bio-Cluster 1.7.3

Bio::Cluster is the BioPerl cluster modules. Classes and modules here describe
the basic structure for a cluster of BioPerl objects.

WWW: https://metacpan.org/release/Bio-Cluster

Number of commits found: 3