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Port details
p5-Bio-Variation BioPerl variation-related functionality
1.7.5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.7.5Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-12-08 16:53:05
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (33 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-Bio-Variation-1.7.5/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-Variation-1.7.5/LICENSE
  3. /usr/local/share/licenses/p5-Bio-Variation-1.7.5/ART10
  4. /usr/local/share/licenses/p5-Bio-Variation-1.7.5/GPLv1+
  5. bin/bp_flanks
  6. lib/perl5/site_perl/Bio/Variation.pm
  7. lib/perl5/site_perl/Bio/Variation/AAChange.pm
  8. lib/perl5/site_perl/Bio/Variation/AAReverseMutate.pm
  9. lib/perl5/site_perl/Bio/Variation/Allele.pm
  10. lib/perl5/site_perl/Bio/Variation/DNAMutation.pm
  11. lib/perl5/site_perl/Bio/Variation/IO.pm
  12. lib/perl5/site_perl/Bio/Variation/IO/flat.pm
  13. lib/perl5/site_perl/Bio/Variation/IO/xml.pm
  14. lib/perl5/site_perl/Bio/Variation/RNAChange.pm
  15. lib/perl5/site_perl/Bio/Variation/SNP.pm
  16. lib/perl5/site_perl/Bio/Variation/SeqDiff.pm
  17. lib/perl5/site_perl/Bio/Variation/VariantI.pm
  18. lib/perl5/site_perl/man/man1/bp_flanks.1.gz
  19. lib/perl5/site_perl/man/man3/Bio::Variation.3.gz
  20. lib/perl5/site_perl/man/man3/Bio::Variation::AAChange.3.gz
  21. lib/perl5/site_perl/man/man3/Bio::Variation::AAReverseMutate.3.gz
  22. lib/perl5/site_perl/man/man3/Bio::Variation::Allele.3.gz
  23. lib/perl5/site_perl/man/man3/Bio::Variation::DNAMutation.3.gz
  24. lib/perl5/site_perl/man/man3/Bio::Variation::IO.3.gz
  25. lib/perl5/site_perl/man/man3/Bio::Variation::IO::flat.3.gz
  26. lib/perl5/site_perl/man/man3/Bio::Variation::IO::xml.3.gz
  27. lib/perl5/site_perl/man/man3/Bio::Variation::RNAChange.3.gz
  28. lib/perl5/site_perl/man/man3/Bio::Variation::SNP.3.gz
  29. lib/perl5/site_perl/man/man3/Bio::Variation::SeqDiff.3.gz
  30. lib/perl5/site_perl/man/man3/Bio::Variation::VariantI.3.gz
  31. @owner
  32. @group
  33. @mode
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Dependency lines:
  • p5-Bio-Variation>0:biology/p5-Bio-Variation
To install the port:
cd /usr/ports/biology/p5-Bio-Variation/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-Bio-Variation
  • pkg install p5-Bio-Variation
PKGNAME: p5-Bio-Variation
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
p5-Bio-Variation
ABIlatestquarterly
FreeBSD:11:aarch64-1.7.5
FreeBSD:11:amd641.7.51.7.5
FreeBSD:11:armv6-1.7.5
FreeBSD:11:i3861.7.51.7.5
FreeBSD:11:mips--
FreeBSD:11:mips64-1.7.5
FreeBSD:12:aarch64-1.7.5
FreeBSD:12:amd641.7.51.7.5
FreeBSD:12:armv6-1.7.5
FreeBSD:12:armv7-1.7.5
FreeBSD:12:i3861.7.51.7.5
FreeBSD:12:mips--
FreeBSD:12:mips64-1.7.5
FreeBSD:12:powerpc64-1.7.5
FreeBSD:13:aarch641.7.51.7.5
FreeBSD:13:amd641.7.51.7.5
FreeBSD:13:armv61.7.51.7.5
FreeBSD:13:armv71.7.51.7.5
FreeBSD:13:i3861.7.51.7.5
FreeBSD:13:mips--
FreeBSD:13:mips641.7.51.7.5
FreeBSD:13:powerpc641.7.51.7.5
FreeBSD:14:aarch641.7.5-
FreeBSD:14:amd641.7.5-
FreeBSD:14:armv61.7.5-
FreeBSD:14:armv71.7.5-
FreeBSD:14:i3861.7.5-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.7.5-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-BioPerl>=0 : biology/p5-BioPerl
  2. p5-IO-String>=0 : devel/p5-IO-String
  3. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  4. p5-XML-Writer>=0.400 : textproc/p5-XML-Writer
  5. perl5>=5.32.r0<5.33 : lang/perl5.32
  6. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-BioPerl>=0 : biology/p5-BioPerl
  2. p5-IO-String>=0 : devel/p5-IO-String
  3. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  4. p5-XML-Writer>=0.400 : textproc/p5-XML-Writer
  5. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Build
  1. biology/p5-Bio-Cluster
for Run
  1. biology/p5-Bio-Cluster

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/
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Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.7.5
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
08 Jan 2020 18:36:35
Original commit files touched by this commit Revision:522440  1.7.5
sunpoet search for other commits by this committer
Update to 1.7.5

Changes:	https://metacpan.org/changes/distribution/Bio-Variation
08 Dec 2019 16:49:31
Original commit files touched by this commit Revision:519320  1.7.4
sunpoet search for other commits by this committer
Add p5-Bio-Variation 1.7.4

Bio::Variation::* provides BioPerl variation-related functionality.

WWW: https://metacpan.org/release/Bio-Variation

Number of commits found: 3