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Port details
p5-Bio-ASN1-EntrezGene Regular expression-based Perl Parser for NCBI Entrez Gene
1.73_2,1 biology on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.73_2,1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2005-10-15 20:11:03
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
People watching this port, also watch:: p5-Syntax-Highlight-Perl-Improved, py38-biopython, p5-XML-DOM-XPath
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (17 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/LICENSE
  3. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/ART10
  4. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/GPLv1+
  5. lib/perl5/site_perl/Bio/ASN1/EntrezGene.pm
  6. lib/perl5/site_perl/Bio/ASN1/EntrezGene/Indexer.pm
  7. lib/perl5/site_perl/Bio/ASN1/Sequence.pm
  8. lib/perl5/site_perl/Bio/ASN1/Sequence/Indexer.pm
  9. lib/perl5/site_perl/Bio/SeqIO/entrezgene.pm
  10. lib/perl5/site_perl/man/man3/Bio::ASN1::EntrezGene.3.gz
  11. lib/perl5/site_perl/man/man3/Bio::ASN1::EntrezGene::Indexer.3.gz
  12. lib/perl5/site_perl/man/man3/Bio::ASN1::Sequence.3.gz
  13. lib/perl5/site_perl/man/man3/Bio::ASN1::Sequence::Indexer.3.gz
  14. lib/perl5/site_perl/man/man3/Bio::SeqIO::entrezgene.3.gz
  15. @owner
  16. @group
  17. @mode
Collapse this list.
Dependency lines:
  • p5-Bio-ASN1-EntrezGene>0:biology/p5-Bio-ASN1-EntrezGene
To install the port: cd /usr/ports/biology/p5-Bio-ASN1-EntrezGene/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-Bio-ASN1-EntrezGene
  • pkg install p5-Bio-ASN1-EntrezGene
PKGNAME: p5-Bio-ASN1-EntrezGene
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
p5-Bio-ASN1-EntrezGene
ABIlatestquarterly
FreeBSD:11:aarch641.72_1,11.73_2,1
FreeBSD:11:amd641.73_2,11.73_2,1
FreeBSD:11:armv61.70_1,11.73_2,1
FreeBSD:11:i3861.73_2,11.73_2,1
FreeBSD:11:mips--
FreeBSD:11:mips64-1.73_2,1
FreeBSD:12:aarch641.72_1,11.73_2,1
FreeBSD:12:amd641.73_2,11.73_2,1
FreeBSD:12:armv61.72_1,11.73_2,1
FreeBSD:12:armv71.73,11.73_2,1
FreeBSD:12:i3861.73_2,11.73_2,1
FreeBSD:12:mips--
FreeBSD:12:mips64-1.73_2,1
FreeBSD:12:powerpc64-1.73_2,1
FreeBSD:13:aarch641.73_2,11.73_2,1
FreeBSD:13:amd641.73_2,11.73_2,1
FreeBSD:13:armv61.73_2,11.73_2,1
FreeBSD:13:armv71.73_2,11.73_2,1
FreeBSD:13:i3861.73_2,11.73_2,1
FreeBSD:13:mips--
FreeBSD:13:mips641.73_2,11.73_2,1
FreeBSD:13:powerpc641.73_2,11.73_2,1
FreeBSD:14:aarch641.73_2,1-
FreeBSD:14:amd641.73_2,1-
FreeBSD:14:armv61.73_2,1-
FreeBSD:14:armv71.73_2,1-
FreeBSD:14:i3861.73_2,1-
FreeBSD:14:mips--
FreeBSD:14:mips641.73_2,1-
FreeBSD:14:powerpc641.73_2,1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
  4. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Build
  1. biology/p5-Bio-DB-NCBIHelper
for Run
  1. biology/p5-Bio-DB-NCBIHelper

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/
Collapse this list.

Number of commits found: 29

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.73_2,1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
08 Jan 2020 18:36:30
Original commit files touched by this commit Revision:522439  1.73_2,1
sunpoet search for other commits by this committer
Update *_DEPENDS

- Bump PORTREVISION for dependency change

The circular dependency among p5-Bio-Cluster, p5-Bio-DB-NCBIHelper,
p5-Bio-Variation and this port has been resolved in p5-Bio-Variation 1.7.5
update.
08 Dec 2019 16:57:14
Original commit files touched by this commit Revision:519354  1.73_1,1
sunpoet search for other commits by this committer
Install Bio::SeqIO::entrezgene

- Bump PORTREVISION for package change
- Take maintainership

Bio::SeqIO::entrezgene has been removed from BioPerl since 1.7.3.
10 Oct 2018 10:23:11
Original commit files touched by this commit Revision:481714  1.73,1
sunpoet search for other commits by this committer
Update to 1.73

Changes:	https://metacpan.org/changes/distribution/Bio-ASN1-EntrezGene
06 Oct 2018 13:06:45
Original commit files touched by this commit Revision:481365  1.72_1,1
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
27 May 2018 20:15:20
Original commit files touched by this commit Revision:470993  1.72_1,1
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
15 Sep 2017 08:58:50
Original commit files touched by this commit Revision:449893  1.72_1,1
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
18 Dec 2016 15:25:14
Original commit files touched by this commit Revision:428869  1.72_1,1
sunpoet search for other commits by this committer
- Add LICENSE
- Add NO_ARCH
- Bump PORTREVISION for biology/p5-bioperl renaming
11 Sep 2016 05:26:01
Original commit files touched by this commit Revision:421793  1.72,1
wen search for other commits by this committer
- Update to 1.72
Changes: http://search.cpan.org/~cjfields/Bio-ASN1-EntrezGene-1.72/
19 May 2016 10:21:25
Original commit files touched by this commit Revision:415498  1.70_1,1
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
01 Apr 2016 13:29:17
Original commit files touched by this commit Revision:412344  1.70_1,1
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
24 Jun 2015 15:16:24
Original commit files touched by this commit Revision:390487  1.70_1,1
adamw search for other commits by this committer
Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The
downside to having this set is that portscout cannot find new releases
when the username changes (which happens often in large projects with
multiple maintainers).
08 May 2015 18:12:37
Original commit files touched by this commit Revision:385811  1.70_1,1
adamw search for other commits by this committer
Reassign biology/ perl modules to perl@.

While here:

Regenerate p5-AcePerl's patches using makepatch.
Make p5-Bio-ASN1-EntrezGene depend on p5-bioperl, instead of the
other way around. Bump PORTREVISION on those two ports.
11 Apr 2015 15:19:04
Original commit files touched by this commit Revision:383807  1.70,1
marino search for other commits by this committer
biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCH

Apparently in some world I don't live in 1.091 > 1.70
pkg needs this port's epoch to be bumped

reported by: 	wen
11 Apr 2015 15:00:13
Original commit files touched by this commit Revision:383805  1.70
marino search for other commits by this committer
biology/p5-Bio-ASN1-EntrezGene: Upgrade 1.09 => 1.70 to unbreak

While here, reset the port.  The last time the maintainer was seen was
in 2005, when the port was created.  Also, rewrap the package description
such that it keeps within 75 characters; also move the url so it won't
wrap across lines.
05 Apr 2015 17:55:36
Original commit files touched by this commit Revision:383309  1.091_1
bapt search for other commits by this committer
Mark as broken unfetchable ports
26 Nov 2014 13:08:38
Original commit files touched by this commit Revision:373448  1.091_1
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit Revision:371237  1.091
bapt search for other commits by this committer
Cleanup plist
29 Jul 2014 19:11:53
Original commit files touched by this commit Revision:363374  1.091
adamw search for other commits by this committer
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
06 Jan 2014 09:57:19
Original commit files touched by this commit Revision:338853  1.091
az search for other commits by this committer
- add stage support

Approved by:	portmgr (blanket infrastructure)
20 Sep 2013 15:55:44
Original commit files touched by this commit Revision:327709  1.091
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
07 Sep 2013 07:44:27
Original commit files touched by this commit Revision:326575  1.091
az search for other commits by this committer
- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)
22 Oct 2011 23:50:23
Original commit files touched by this commit   1.091
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
19 Mar 2011 12:38:54
Original commit files touched by this commit   1.091
miwi search for other commits by this committer
- Get Rid MD5 support
17 Apr 2008 14:30:31
Original commit files touched by this commit   1.091
araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
08 Sep 2007 00:53:15
Original commit files touched by this commit   1.091
linimon search for other commits by this committer
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
22 Jan 2006 08:20:34
Original commit files touched by this commit   1.091
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
22 Jan 2006 01:25:24
Original commit files touched by this commit   1.091
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
15 Oct 2005 20:09:50
Original commit files touched by this commit   1.091
ehaupt search for other commits by this committer
Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for
NCBI Entrez Gene.

PR:             87423
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Approved by:    novel (mentor) (implicit)

Number of commits found: 29