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Port details
p5-Bio-Phylo Phylogenetic analysis using Perl
2.0.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2006-05-13 16:50:16
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: perl5
License: ART10 GPLv1+
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (271 items)
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  1. /usr/local/share/licenses/p5-Bio-Phylo-2.0.1/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-Phylo-2.0.1/LICENSE
  3. /usr/local/share/licenses/p5-Bio-Phylo-2.0.1/ART10
  4. /usr/local/share/licenses/p5-Bio-Phylo-2.0.1/GPLv1+
  5. lib/perl5/site_perl/Bio/Phylo.pm
  6. lib/perl5/site_perl/Bio/Phylo/EvolutionaryModels.pm
  7. lib/perl5/site_perl/Bio/Phylo/Factory.pm
  8. lib/perl5/site_perl/Bio/Phylo/Forest.pm
  9. lib/perl5/site_perl/Bio/Phylo/Forest/DrawNodeRole.pm
  10. lib/perl5/site_perl/Bio/Phylo/Forest/DrawTreeRole.pm
  11. lib/perl5/site_perl/Bio/Phylo/Forest/Node.pm
  12. lib/perl5/site_perl/Bio/Phylo/Forest/NodeRole.pm
  13. lib/perl5/site_perl/Bio/Phylo/Forest/Tree.pm
  14. lib/perl5/site_perl/Bio/Phylo/Forest/TreeRole.pm
  15. lib/perl5/site_perl/Bio/Phylo/Generator.pm
  16. lib/perl5/site_perl/Bio/Phylo/IO.pm
  17. lib/perl5/site_perl/Bio/Phylo/Identifiable.pm
  18. lib/perl5/site_perl/Bio/Phylo/Listable.pm
  19. lib/perl5/site_perl/Bio/Phylo/ListableRole.pm
  20. lib/perl5/site_perl/Bio/Phylo/Manual.pod
  21. lib/perl5/site_perl/Bio/Phylo/Matrices.pm
  22. lib/perl5/site_perl/Bio/Phylo/Matrices/Character.pm
  23. lib/perl5/site_perl/Bio/Phylo/Matrices/Characters.pm
  24. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype.pm
  25. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Continuous.pm
  26. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Custom.pm
  27. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Dna.pm
  28. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Illumina.pm
  29. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Mixed.pm
  30. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Protein.pm
  31. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Restriction.pm
  32. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Rna.pm
  33. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Sanger.pm
  34. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Solexa.pm
  35. lib/perl5/site_perl/Bio/Phylo/Matrices/Datatype/Standard.pm
  36. lib/perl5/site_perl/Bio/Phylo/Matrices/Datum.pm
  37. lib/perl5/site_perl/Bio/Phylo/Matrices/DatumRole.pm
  38. lib/perl5/site_perl/Bio/Phylo/Matrices/Matrix.pm
  39. lib/perl5/site_perl/Bio/Phylo/Matrices/MatrixRole.pm
  40. lib/perl5/site_perl/Bio/Phylo/Matrices/TypeSafeData.pm
  41. lib/perl5/site_perl/Bio/Phylo/Mediators/TaxaMediator.pm
  42. lib/perl5/site_perl/Bio/Phylo/Models/Substitution/Binary.pm
  43. lib/perl5/site_perl/Bio/Phylo/Models/Substitution/Dna.pm
  44. lib/perl5/site_perl/Bio/Phylo/Models/Substitution/Dna/F81.pm
  45. lib/perl5/site_perl/Bio/Phylo/Models/Substitution/Dna/GTR.pm
  46. lib/perl5/site_perl/Bio/Phylo/Models/Substitution/Dna/HKY85.pm
  47. lib/perl5/site_perl/Bio/Phylo/Models/Substitution/Dna/JC69.pm
  48. lib/perl5/site_perl/Bio/Phylo/Models/Substitution/Dna/K80.pm
  49. lib/perl5/site_perl/Bio/Phylo/NeXML/DOM.pm
  50. lib/perl5/site_perl/Bio/Phylo/NeXML/DOM/Document.pm
  51. lib/perl5/site_perl/Bio/Phylo/NeXML/DOM/Document/Libxml.pm
  52. lib/perl5/site_perl/Bio/Phylo/NeXML/DOM/Document/Twig.pm
  53. lib/perl5/site_perl/Bio/Phylo/NeXML/DOM/Element.pm
  54. lib/perl5/site_perl/Bio/Phylo/NeXML/DOM/Element/Libxml.pm
  55. lib/perl5/site_perl/Bio/Phylo/NeXML/DOM/Element/Twig.pm
  56. lib/perl5/site_perl/Bio/Phylo/NeXML/Entities.pm
  57. lib/perl5/site_perl/Bio/Phylo/NeXML/Meta.pm
  58. lib/perl5/site_perl/Bio/Phylo/NeXML/Meta/XMLLiteral.pm
  59. lib/perl5/site_perl/Bio/Phylo/NeXML/Writable.pm
  60. lib/perl5/site_perl/Bio/Phylo/NeXML/XML2JSON.pm
  61. lib/perl5/site_perl/Bio/Phylo/Parsers/Abstract.pm
  62. lib/perl5/site_perl/Bio/Phylo/Parsers/Adjacency.pm
  63. lib/perl5/site_perl/Bio/Phylo/Parsers/Cdao.pm
  64. lib/perl5/site_perl/Bio/Phylo/Parsers/Dwca.pm
  65. lib/perl5/site_perl/Bio/Phylo/Parsers/Fasta.pm
  66. lib/perl5/site_perl/Bio/Phylo/Parsers/Fastq.pm
  67. lib/perl5/site_perl/Bio/Phylo/Parsers/Figtree.pm
  68. lib/perl5/site_perl/Bio/Phylo/Parsers/Json.pm
  69. lib/perl5/site_perl/Bio/Phylo/Parsers/Newick.pm
  70. lib/perl5/site_perl/Bio/Phylo/Parsers/Nexml.pm
  71. lib/perl5/site_perl/Bio/Phylo/Parsers/Nexus.pm
  72. lib/perl5/site_perl/Bio/Phylo/Parsers/Nhx.pm
  73. lib/perl5/site_perl/Bio/Phylo/Parsers/Phylip.pm
  74. lib/perl5/site_perl/Bio/Phylo/Parsers/Phyloxml.pm
  75. lib/perl5/site_perl/Bio/Phylo/Parsers/Table.pm
  76. lib/perl5/site_perl/Bio/Phylo/Parsers/Taxlist.pm
  77. lib/perl5/site_perl/Bio/Phylo/Parsers/Tnrs.pm
  78. lib/perl5/site_perl/Bio/Phylo/Parsers/Tolweb.pm
  79. lib/perl5/site_perl/Bio/Phylo/Parsers/Ubiocbmeta.pm
  80. lib/perl5/site_perl/Bio/Phylo/Parsers/Ubiometa.pm
  81. lib/perl5/site_perl/Bio/Phylo/Parsers/Ubiosearch.pm
  82. lib/perl5/site_perl/Bio/Phylo/PhyloWS.pm
  83. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Client.pm
  84. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Resource.pm
  85. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Resource/Description.pm
  86. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Service.pm
  87. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Service/Timetree.pm
  88. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Service/Tolweb.pm
  89. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Service/UbioClassificationBank.pm
  90. lib/perl5/site_perl/Bio/Phylo/PhyloWS/Service/UbioNameBank.pm
  91. lib/perl5/site_perl/Bio/Phylo/Project.pm
  92. lib/perl5/site_perl/Bio/Phylo/Set.pm
  93. lib/perl5/site_perl/Bio/Phylo/Taxa.pm
  94. lib/perl5/site_perl/Bio/Phylo/Taxa/TaxaLinker.pm
  95. lib/perl5/site_perl/Bio/Phylo/Taxa/Taxon.pm
  96. lib/perl5/site_perl/Bio/Phylo/Taxa/TaxonLinker.pm
  97. lib/perl5/site_perl/Bio/Phylo/Treedrawer.pm
  98. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Abstract.pm
  99. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Canvas.pm
  100. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Gif.pm
  101. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Jpeg.pm
  102. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Pdf.pm
  103. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Png.pm
  104. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Processing.pm
  105. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Svg.pm
  106. lib/perl5/site_perl/Bio/Phylo/Treedrawer/Swf.pm
  107. lib/perl5/site_perl/Bio/Phylo/Unparsers/Abstract.pm
  108. lib/perl5/site_perl/Bio/Phylo/Unparsers/Adjacency.pm
  109. lib/perl5/site_perl/Bio/Phylo/Unparsers/Cdao.pm
  110. lib/perl5/site_perl/Bio/Phylo/Unparsers/Fasta.pm
  111. lib/perl5/site_perl/Bio/Phylo/Unparsers/Figtree.pm
  112. lib/perl5/site_perl/Bio/Phylo/Unparsers/Hennig86.pm
  113. lib/perl5/site_perl/Bio/Phylo/Unparsers/Html.pm
  114. lib/perl5/site_perl/Bio/Phylo/Unparsers/Json.pm
  115. lib/perl5/site_perl/Bio/Phylo/Unparsers/Mrp.pm
  116. lib/perl5/site_perl/Bio/Phylo/Unparsers/Newick.pm
  117. lib/perl5/site_perl/Bio/Phylo/Unparsers/Nexml.pm
  118. lib/perl5/site_perl/Bio/Phylo/Unparsers/Nexus.pm
  119. lib/perl5/site_perl/Bio/Phylo/Unparsers/Nhx.pm
  120. lib/perl5/site_perl/Bio/Phylo/Unparsers/Nwmsrdf.pm
  121. lib/perl5/site_perl/Bio/Phylo/Unparsers/Pagel.pm
  122. lib/perl5/site_perl/Bio/Phylo/Unparsers/Phylip.pm
  123. lib/perl5/site_perl/Bio/Phylo/Unparsers/Phyloxml.pm
  124. lib/perl5/site_perl/Bio/Phylo/Unparsers/Rss1.pm
  125. lib/perl5/site_perl/Bio/Phylo/Unparsers/Taxlist.pm
  126. lib/perl5/site_perl/Bio/Phylo/Util/CONSTANT.pm
  127. lib/perl5/site_perl/Bio/Phylo/Util/CONSTANT/Int.pm
  128. lib/perl5/site_perl/Bio/Phylo/Util/Dependency.pm
  129. lib/perl5/site_perl/Bio/Phylo/Util/Exceptions.pm
  130. lib/perl5/site_perl/Bio/Phylo/Util/IDPool.pm
  131. lib/perl5/site_perl/Bio/Phylo/Util/Logger.pm
  132. lib/perl5/site_perl/Bio/Phylo/Util/MOP.pm
  133. lib/perl5/site_perl/Bio/Phylo/Util/Math.pm
  134. lib/perl5/site_perl/Bio/Phylo/Util/OptionalInterface.pm
  135. lib/perl5/site_perl/Bio/Phylo/Util/StackTrace.pm
  136. lib/perl5/site_perl/Bio/PhyloRole.pm
  137. lib/perl5/site_perl/man/man3/Bio::Phylo.3.gz
  138. lib/perl5/site_perl/man/man3/Bio::Phylo::EvolutionaryModels.3.gz
  139. lib/perl5/site_perl/man/man3/Bio::Phylo::Factory.3.gz
  140. lib/perl5/site_perl/man/man3/Bio::Phylo::Forest.3.gz
  141. lib/perl5/site_perl/man/man3/Bio::Phylo::Forest::DrawNodeRole.3.gz
  142. lib/perl5/site_perl/man/man3/Bio::Phylo::Forest::DrawTreeRole.3.gz
  143. lib/perl5/site_perl/man/man3/Bio::Phylo::Forest::Node.3.gz
  144. lib/perl5/site_perl/man/man3/Bio::Phylo::Forest::NodeRole.3.gz
  145. lib/perl5/site_perl/man/man3/Bio::Phylo::Forest::Tree.3.gz
  146. lib/perl5/site_perl/man/man3/Bio::Phylo::Forest::TreeRole.3.gz
  147. lib/perl5/site_perl/man/man3/Bio::Phylo::Generator.3.gz
  148. lib/perl5/site_perl/man/man3/Bio::Phylo::IO.3.gz
  149. lib/perl5/site_perl/man/man3/Bio::Phylo::Identifiable.3.gz
  150. lib/perl5/site_perl/man/man3/Bio::Phylo::Listable.3.gz
  151. lib/perl5/site_perl/man/man3/Bio::Phylo::ListableRole.3.gz
  152. lib/perl5/site_perl/man/man3/Bio::Phylo::Manual.3.gz
  153. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices.3.gz
  154. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Character.3.gz
  155. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Characters.3.gz
  156. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype.3.gz
  157. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Continuous.3.gz
  158. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Custom.3.gz
  159. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Dna.3.gz
  160. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Illumina.3.gz
  161. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Mixed.3.gz
  162. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Protein.3.gz
  163. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Restriction.3.gz
  164. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Rna.3.gz
  165. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Sanger.3.gz
  166. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Solexa.3.gz
  167. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datatype::Standard.3.gz
  168. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Datum.3.gz
  169. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::DatumRole.3.gz
  170. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::Matrix.3.gz
  171. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::MatrixRole.3.gz
  172. lib/perl5/site_perl/man/man3/Bio::Phylo::Matrices::TypeSafeData.3.gz
  173. lib/perl5/site_perl/man/man3/Bio::Phylo::Mediators::TaxaMediator.3.gz
  174. lib/perl5/site_perl/man/man3/Bio::Phylo::Models::Substitution::Binary.3.gz
  175. lib/perl5/site_perl/man/man3/Bio::Phylo::Models::Substitution::Dna.3.gz
  176. lib/perl5/site_perl/man/man3/Bio::Phylo::Models::Substitution::Dna::F81.3.gz
  177. lib/perl5/site_perl/man/man3/Bio::Phylo::Models::Substitution::Dna::GTR.3.gz
  178. lib/perl5/site_perl/man/man3/Bio::Phylo::Models::Substitution::Dna::HKY85.3.gz
  179. lib/perl5/site_perl/man/man3/Bio::Phylo::Models::Substitution::Dna::JC69.3.gz
  180. lib/perl5/site_perl/man/man3/Bio::Phylo::Models::Substitution::Dna::K80.3.gz
  181. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::DOM.3.gz
  182. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::DOM::Document.3.gz
  183. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::DOM::Document::Libxml.3.gz
  184. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::DOM::Document::Twig.3.gz
  185. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::DOM::Element.3.gz
  186. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::DOM::Element::Libxml.3.gz
  187. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::DOM::Element::Twig.3.gz
  188. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::Entities.3.gz
  189. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::Meta.3.gz
  190. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::Meta::XMLLiteral.3.gz
  191. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::Writable.3.gz
  192. lib/perl5/site_perl/man/man3/Bio::Phylo::NeXML::XML2JSON.3.gz
  193. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Abstract.3.gz
  194. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Adjacency.3.gz
  195. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Cdao.3.gz
  196. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Dwca.3.gz
  197. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Fasta.3.gz
  198. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Fastq.3.gz
  199. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Figtree.3.gz
  200. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Json.3.gz
  201. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Newick.3.gz
  202. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Nexml.3.gz
  203. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Nexus.3.gz
  204. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Nhx.3.gz
  205. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Phylip.3.gz
  206. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Phyloxml.3.gz
  207. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Table.3.gz
  208. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Taxlist.3.gz
  209. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Tnrs.3.gz
  210. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Tolweb.3.gz
  211. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Ubiocbmeta.3.gz
  212. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Ubiometa.3.gz
  213. lib/perl5/site_perl/man/man3/Bio::Phylo::Parsers::Ubiosearch.3.gz
  214. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS.3.gz
  215. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Client.3.gz
  216. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Resource.3.gz
  217. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Resource::Description.3.gz
  218. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Service.3.gz
  219. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Service::Timetree.3.gz
  220. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Service::Tolweb.3.gz
  221. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3.gz
  222. lib/perl5/site_perl/man/man3/Bio::Phylo::PhyloWS::Service::UbioNameBank.3.gz
  223. lib/perl5/site_perl/man/man3/Bio::Phylo::Project.3.gz
  224. lib/perl5/site_perl/man/man3/Bio::Phylo::Set.3.gz
  225. lib/perl5/site_perl/man/man3/Bio::Phylo::Taxa.3.gz
  226. lib/perl5/site_perl/man/man3/Bio::Phylo::Taxa::TaxaLinker.3.gz
  227. lib/perl5/site_perl/man/man3/Bio::Phylo::Taxa::Taxon.3.gz
  228. lib/perl5/site_perl/man/man3/Bio::Phylo::Taxa::TaxonLinker.3.gz
  229. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer.3.gz
  230. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Abstract.3.gz
  231. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Canvas.3.gz
  232. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Gif.3.gz
  233. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Jpeg.3.gz
  234. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Pdf.3.gz
  235. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Png.3.gz
  236. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Processing.3.gz
  237. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Svg.3.gz
  238. lib/perl5/site_perl/man/man3/Bio::Phylo::Treedrawer::Swf.3.gz
  239. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Abstract.3.gz
  240. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Adjacency.3.gz
  241. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Cdao.3.gz
  242. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Fasta.3.gz
  243. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Figtree.3.gz
  244. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Hennig86.3.gz
  245. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Html.3.gz
  246. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Json.3.gz
  247. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Mrp.3.gz
  248. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Newick.3.gz
  249. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Nexml.3.gz
  250. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Nexus.3.gz
  251. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Nhx.3.gz
  252. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Nwmsrdf.3.gz
  253. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Pagel.3.gz
  254. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Phylip.3.gz
  255. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Phyloxml.3.gz
  256. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Rss1.3.gz
  257. lib/perl5/site_perl/man/man3/Bio::Phylo::Unparsers::Taxlist.3.gz
  258. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::CONSTANT.3.gz
  259. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::CONSTANT::Int.3.gz
  260. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::Dependency.3.gz
  261. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::Exceptions.3.gz
  262. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::IDPool.3.gz
  263. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::Logger.3.gz
  264. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::MOP.3.gz
  265. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::Math.3.gz
  266. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::OptionalInterface.3.gz
  267. lib/perl5/site_perl/man/man3/Bio::Phylo::Util::StackTrace.3.gz
  268. lib/perl5/site_perl/man/man3/Bio::PhyloRole.3.gz
  269. @owner
  270. @group
  271. @mode
Collapse this list.
Dependency lines:
  • p5-Bio-Phylo>0:biology/p5-Bio-Phylo
To install the port:
cd /usr/ports/biology/p5-Bio-Phylo/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-Bio-Phylo
  • pkg install p5-Bio-Phylo
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-Bio-Phylo
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
p5-Bio-Phylo
ABIlatestquarterly
FreeBSD:11:aarch642.0.12.0.1
FreeBSD:11:amd642.0.12.0.1
FreeBSD:11:armv60.582.0.1
FreeBSD:11:i3862.0.12.0.1
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch642.0.12.0.1
FreeBSD:12:amd642.0.12.0.1
FreeBSD:12:armv62.0.12.0.1
FreeBSD:12:armv72.0.12.0.1
FreeBSD:12:i3862.0.12.0.1
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout2.0.1
FreeBSD:13:aarch642.0.12.0.1
FreeBSD:13:amd642.0.12.0.1
FreeBSD:13:armv62.0.12.0.1
FreeBSD:13:armv72.0.12.0.1
FreeBSD:13:i3862.0.12.0.1
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc642.0.12.0.1
FreeBSD:13:riscv64pkg-fallout2.0.1
FreeBSD:14:aarch642.0.1pkg-fallout
FreeBSD:14:amd642.0.1pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv72.0.1pkg-fallout
FreeBSD:14:i3862.0.1pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc642.0.1pkg-fallout
FreeBSD:14:riscv642.0.1pkg-fallout
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Archive-Zip>=0 : archivers/p5-Archive-Zip
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. p5-GD>=0 : graphics/p5-GD
  4. p5-Math-CDF>=0 : math/p5-Math-CDF
  5. p5-Math-Random>=0 : math/p5-Math-Random
  6. p5-PDF-API2>=0 : textproc/p5-PDF-API2
  7. p5-RDF-Query>=0 : textproc/p5-RDF-Query
  8. p5-RDF-Trine>=0 : textproc/p5-RDF-Trine
  9. p5-SVG>=0 : textproc/p5-SVG
  10. p5-SWF-Builder>=0 : graphics/p5-SWF-Builder
  11. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  12. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  13. p5-XML-XML2JSON>=0 : textproc/p5-XML-XML2JSON
  14. p5-libxml>=0 : textproc/p5-libxml
  15. perl5>=5.32.r0<5.33 : lang/perl5.32
  16. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Archive-Zip>=0 : archivers/p5-Archive-Zip
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. p5-GD>=0 : graphics/p5-GD
  4. p5-Math-CDF>=0 : math/p5-Math-CDF
  5. p5-Math-Random>=0 : math/p5-Math-Random
  6. p5-PDF-API2>=0 : textproc/p5-PDF-API2
  7. p5-RDF-Query>=0 : textproc/p5-RDF-Query
  8. p5-RDF-Trine>=0 : textproc/p5-RDF-Trine
  9. p5-SVG>=0 : textproc/p5-SVG
  10. p5-SWF-Builder>=0 : graphics/p5-SWF-Builder
  11. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  12. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  13. p5-XML-XML2JSON>=0 : textproc/p5-XML-XML2JSON
  14. p5-libxml>=0 : textproc/p5-libxml
  15. perl5>=5.32.r0<5.33 : lang/perl5.32
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message

Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/
Collapse this list.

Number of commits found: 55

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.0.1
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.1
20 Jul 2022 14:20:57
commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.1
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.0.1
06 Oct 2018 13:06:45
Revision:481365Original commit files touched by this commit
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
2.0.1
27 May 2018 20:15:20
Revision:470993Original commit files touched by this commit
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
2.0.1
26 Dec 2017 23:20:28
Revision:457333Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 2.0.1

Changes:	https://github.com/rvosa/bio-phylo/releases
0.58_1
15 Sep 2017 08:58:50
Revision:449893Original commit files touched by this commit
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
0.58_1
18 Dec 2016 15:25:22
Revision:428871Original commit files touched by this commit
sunpoet search for other commits by this committer
- Add LICENSE_FILE
- Add NO_ARCH
- Bump PORTREVISION for biology/p5-bioperl renaming
0.58
19 May 2016 10:21:25
Revision:415498Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
0.58
01 Apr 2016 13:29:17
Revision:412344Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
0.58
07 Dec 2014 04:41:48
Revision:374171Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.58
0.56_1
26 Nov 2014 13:08:38
Revision:373448Original commit files touched by this commit
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.56
20 Oct 2014 07:10:48
Revision:371237Original commit files touched by this commit
bapt search for other commits by this committer
Cleanup plist
0.56
05 Jan 2014 12:07:21
Revision:338751Original commit files touched by this commit
az search for other commits by this committer
- support stage
0.56
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
0.56
02 Aug 2013 18:52:11
Revision:324174Original commit files touched by this commit
mat search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
0.56
20 Jul 2013 10:04:33
Revision:323340Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.56
0.52
16 Feb 2013 14:58:52
Revision:312356Original commit files touched by this commit
culot search for other commits by this committer
- Update to 0.52 [1]
- Capitalize names (Perl) in COMMENT

PR:		ports/176003 [1]
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
0.50
12 Jun 2012 18:55:28
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 0.50
- Add TEST_DEPENDS
- Sort PLIST
0.49
03 Jun 2012 15:12:49
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 0.49
0.48_1
01 Jun 2012 05:26:28
Original commit files touched by this commit
dinoex search for other commits by this committer
- update png to 1.5.10
0.48
03 May 2012 09:48:21
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 0.48
- Add BUILD_DEPENDS
0.47
11 Apr 2012 01:34:57
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.47
0.46
05 Mar 2012 08:22:46
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.46
0.45
29 Oct 2011 06:20:45
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 0.45
0.43
17 Oct 2011 01:38:22
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 0.43
0.40
09 Aug 2011 18:26:45
Original commit files touched by this commit
culot search for other commits by this committer
- Update to 0.40
- Add LICENSE (Artistic 1 & GPLv1)
0.39
01 Aug 2011 03:11:37
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 0.39
0.38
16 Jul 2011 06:08:34
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 0.38
- Sort MAN3 and PLIST
0.36
01 Apr 2011 08:34:03
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.36
0.35
28 Feb 2011 01:30:15
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.35
0.34
23 Dec 2010 06:33:33
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.34
0.33
16 Dec 2010 08:19:56
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.33
0.32
12 Dec 2010 21:29:40
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Update to 0.32

With Hat:       perl@
Changes:        http://search.cpan.org/dist/Bio-Phylo/Changes
0.31
22 Nov 2010 08:50:40
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.31
0.30
17 Nov 2010 06:24:38
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.30

PR:             ports/152205
Submitted by:   Gea-Suan Lin <gslin@gslin.org>
0.28
09 Nov 2010 14:15:44
Original commit files touched by this commit
jadawin search for other commits by this committer
- Update to 0.28
0.26
25 Oct 2010 10:59:25
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.26
- Reset maintainer to perl@
0.22
22 Oct 2010 09:29:44
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.22
0.21_1
28 Mar 2010 06:47:48
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
0.21
09 Mar 2010 07:34:48
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.21
0.18
03 Mar 2010 13:44:19
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 0.18
- Adopt

Feature safe:   yes
0.16_2
05 Feb 2010 11:46:55
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to jpeg-8
0.16_1
21 Dec 2009 02:19:12
Original commit files touched by this commit
dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
0.16_1
31 Jul 2009 13:57:52
Original commit files touched by this commit
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
0.16
29 Apr 2008 05:27:10
Original commit files touched by this commit
linimon search for other commits by this committer
Reset aaron's port maintainerships due to many maintainer-timeouts.
0.16
17 Apr 2008 14:30:31
Original commit files touched by this commit
araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
0.16
08 Sep 2007 00:53:15
Original commit files touched by this commit
linimon search for other commits by this committer
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
0.16
19 Jun 2007 20:15:59
Original commit files touched by this commit
aaron search for other commits by this committer
Bump to v0.16.

PR:             111719
Submitted by:   araujo@bsdmail.org
0.15_1
19 May 2007 20:32:57
Original commit files touched by this commit
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
0.15
27 Dec 2006 18:58:26
Original commit files touched by this commit
aaron search for other commits by this committer
Update to v0.15
0.14
07 Dec 2006 15:43:27
Original commit files touched by this commit
laszlof search for other commits by this committer
- Update to 0.14

Submitted by:   Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
Approved by:    maintainer timeout (3 months)
0.12
19 May 2006 23:18:32
Original commit files touched by this commit
aaron search for other commits by this committer
- Updated from 0.07 to 0.12

Approved by:    tobez (implicit)

0.08 20/Feb/2006 15:14
                       Improved referential integrity between nodes,
                                taxa, and data.
                       Implemented Fastnexus parser
                       Node object silently implements Bio::Tree::NodeI
                                interface if BioPerl is installed
                       Tree object silently implements Bio::Tree::TreeI
                                interface if BioPerl is installed
                       Added convertor methods for XML and CIPRES
                       Implemented more Matrix methods
                       Implemented symbol tables in Bio::Phylo::Util::CONSTANT
                       Implemented visit method for listable objects
                       Implemented caching infrastructure for calculations
                       Changed object-model to inside-out arrays
                       Added Biodiversity measures code by Aki Mimoto
                       Moved constants and exceptions to Bio::Phylo::Util::*
                       Fixed memory leak due to circular references
0.07
13 May 2006 16:48:15
Original commit files touched by this commit
aaron search for other commits by this committer
Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.

Approved by:    tobez (implicit)

Number of commits found: 55