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Port details
pear-merger Memory-efficient and highly accurate paired-end read merger
0.9.6 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.9.6Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-04 17:21:55
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: CC-BY-NC-SA-3.0
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/pearRM
  2. man/man1/pearRM.1.gz
  3. /usr/local/share/licenses/pear-merger-0.9.6/catalog.mk
  4. /usr/local/share/licenses/pear-merger-0.9.6/LICENSE
  5. /usr/local/share/licenses/pear-merger-0.9.6/CC-BY-NC-SA-3.0
Collapse this list.
Dependency lines:
  • pear-merger>0:biology/pear-merger
To install the port:
cd /usr/ports/biology/pear-merger/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/pear-merger
  • pkg install pear-merger
PKGNAME: pear-merger
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
pear-merger
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.9.60.9.6
FreeBSD:11:armv6--
FreeBSD:11:i3860.9.60.9.6
FreeBSD:11:mips--
FreeBSD:11:mips64-0.9.6
FreeBSD:12:aarch64-0.9.6
FreeBSD:12:amd640.9.60.9.6
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.9.60.9.6
FreeBSD:12:mips--
FreeBSD:12:mips640.9.60.9.6
FreeBSD:12:powerpc64-0.9.6
FreeBSD:13:aarch64-0.9.6
FreeBSD:13:amd640.9.60.9.6
FreeBSD:13:armv6--
FreeBSD:13:armv7-0.9.6
FreeBSD:13:i3860.9.60.9.6
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-0.9.6
FreeBSD:14:aarch640.9.6-
FreeBSD:14:amd640.9.6-
FreeBSD:14:armv6--
FreeBSD:14:armv70.9.6-
FreeBSD:14:i3860.9.6-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc640.9.6-
 

This port is required by:
for Run
  1. biology/ddocent

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://depot.galaxyproject.org/software/pear/
Collapse this list.

Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.9.6
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.9.6
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
06 Apr 2021 13:04:16
 files touched by this commit commit hash:8f0ebbe09b53d252688d90d716bd46db3df6d47b  0.9.6
Piotr Kubaj (pkubaj) search for other commits by this committer
biology/pear-merger: enable on aarch64, armv6, armv7, riscv64

It should build now.
06 Apr 2021 09:50:56
 files touched by this commit commit hash:2ffa084df93c5ae30d1ce0a9fba1f4f0c902212e  0.9.6
Piotr Kubaj (pkubaj) search for other commits by this committer
biology/pear-merger: fix build on non-x86

Builds fine with GCC.
02 Jan 2021 01:46:09
Original commit files touched by this commit Revision:559904  0.9.6
linimon search for other commits by this committer
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.

While here, pet portlint (Makevar order).

Approved by:	portmgr (tier-2 blanket)
21 Jun 2018 23:52:37
Original commit files touched by this commit Revision:473009  0.9.6
linimon search for other commits by this committer
Mark as broken on aarch64, and, where appropriate, armvX.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
04 Apr 2018 17:21:39
Original commit files touched by this commit Revision:466449  0.9.6
jwb search for other commits by this committer
biology/pear-merger: Memory-efficient and accurate paired-end read merger

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14959

Number of commits found: 7