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Port details on branch 2026Q3
pear-merger Memory-efficient and highly accurate paired-end read merger
0.9.6_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.9.6_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-04 17:21:55
Last Update: 2024-01-12 15:11:29
Commit Hash: d432922
License: CC-BY-NC-SA-3.0
WWW:
https://sco.h-its.org/exelixis/web/software/pear/
Description:
PEAR is an ultrafast, memory-efficient and highly accurate paired-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/pearRM
  2. share/man/man1/pearRM.1.gz
  3. /usr/local/share/licenses/pear-merger-0.9.6_1/catalog.mk
  4. /usr/local/share/licenses/pear-merger-0.9.6_1/LICENSE
  5. /usr/local/share/licenses/pear-merger-0.9.6_1/CC-BY-NC-SA-3.0
Collapse this list.
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • pear-merger>0:biology/pear-merger
To install the port:
cd /usr/ports/biology/pear-merger/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/pear-merger
  • pkg install pear-merger
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: pear-merger
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1519766031 SHA256 (pear_0.9.6_src_all.tar.gz) = f7728371e26a5b46fa928b0f7ae1b552ed6a78815b117ba48ef1af98e96c8e2b SIZE (pear_0.9.6_src_all.tar.gz) = 292790

Packages (timestamps in pop-ups are UTC):
pear-merger
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.9.6_10.9.6_1-0.9.6_10.9.6_1n/an/an/a
FreeBSD:13:quarterly0.9.6_10.9.6_1-0.9.6_10.9.6_1n/an/an/a
FreeBSD:14:latest0.9.6_10.9.6_1-0.9.6_10.9.6_1---
FreeBSD:14:quarterly0.9.6_10.9.6_1-0.9.6_10.9.6_1-0.9.60.9.6
FreeBSD:15:latest0.9.6_10.9.6_1n/a0.9.6_1n/an/a0.9.6_10.9.6_1
FreeBSD:15:quarterly0.9.6_10.9.6_1n/a-n/an/a--
FreeBSD:16:latest0.9.6_10.9.6_1n/a-n/an/a--
This port has no dependencies.
This port is required by:
for Run
  1. biology/ddocent

Configuration Options:
No options to configure
Options name:
biology_pear-merger
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://depot.galaxyproject.org/software/pear/
Collapse this list.

There are no commits on branch 2026Q3 for this port