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We just rebooted with several updates: * new HMTLify code * no port maintainer is now highly visible (e.g. https://freshports.org/security/sssd/) * fixed search logic error when using plain/ text details at https://github.com/FreshPorts/freshports/releases/tag/2.2.34
Port details
py-ete3 Framework for the analysis and visualization of trees
3.1.2_5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-05-16 00:13:16
Last Update: 2023-01-11 15:58:34
Commit Hash: 77d6847
Also Listed In: python
License: GPLv3
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}ete3>0:biology/py-ete3@${PY_FLAVOR}
To install the port:
cd /usr/ports/biology/py-ete3/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-ete3
  • pkg install py39-ete3
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-ete3 listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-ete3
Package flavors (<flavor>: <package>)
  • py39: py39-ete3
distinfo:

Packages (timestamps in pop-ups are UTC):
py27-ete3
ABIlatestquarterly
FreeBSD:11:aarch64pkg-fallout3.1.1
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-falloutpkg-fallout
FreeBSD:12:amd64pkg-falloutpkg-fallout
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i386pkg-falloutpkg-fallout
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:aarch64pkg-falloutpkg-fallout
FreeBSD:13:amd64pkg-falloutpkg-fallout
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv7pkg-falloutpkg-fallout
FreeBSD:13:i386pkg-falloutpkg-fallout
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch64pkg-falloutpkg-fallout
FreeBSD:14:amd64pkg-falloutpkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i386pkg-falloutpkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc64pkg-falloutpkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 
py37-ete3
ABIlatestquarterly
FreeBSD:11:aarch64pkg-fallout3.1.1
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-falloutpkg-fallout
FreeBSD:12:amd64pkg-falloutpkg-fallout
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i386pkg-falloutpkg-fallout
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout3.1.2_4
FreeBSD:13:aarch64pkg-falloutpkg-fallout
FreeBSD:13:amd64pkg-falloutpkg-fallout
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv7pkg-falloutpkg-fallout
FreeBSD:13:i386pkg-falloutpkg-fallout
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch64pkg-falloutpkg-fallout
FreeBSD:14:amd64pkg-falloutpkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i386pkg-falloutpkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc64pkg-falloutpkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 
py39-ete3
ABIlatestquarterly
FreeBSD:11:aarch64pkg-falloutpkg-fallout
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-fallout3.1.2_5
FreeBSD:12:amd643.1.2_53.1.2_5
FreeBSD:12:armv6pkg-falloutpkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i3863.1.2_53.1.2_5
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:aarch643.1.2_53.1.2_5
FreeBSD:13:amd643.1.2_53.1.2_5
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv73.1.2_53.1.2_5
FreeBSD:13:i3863.1.2_53.1.2_5
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-fallout3.1.2_5
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch643.1.2_5pkg-fallout
FreeBSD:14:amd643.1.2_5pkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i3863.1.2_5pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc643.1.2_5pkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-numpy>=1.16,1<1.24,1 : math/py-numpy@py39
  2. py39-lxml>0 : devel/py-lxml@py39
  3. py39-six>0 : devel/py-six@py39
  4. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  5. python3.9 : lang/python39
  6. py39-qt5-pyqt>=5.15.7 : devel/py-qt5-pyqt@py39
Test dependencies:
  1. py39-pytest>=7,1 : devel/py-pytest@py39
  2. python3.9 : lang/python39
  3. py39-qt5-pyqt>=5.15.7 : devel/py-qt5-pyqt@py39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.24,1 : math/py-numpy@py39
  2. py39-lxml>0 : devel/py-lxml@py39
  3. py39-six>0 : devel/py-six@py39
  4. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  5. python3.9 : lang/python39
  6. py39-qt5-pyqt>=5.15.7 : devel/py-qt5-pyqt@py39
There are no ports dependent upon this port

Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/e/ete3/
  2. https://pypi.org/packages/source/e/ete3/
Collapse this list.
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
3.1.2_5
11 Jan 2023 15:58:34
commit hash:77d68471aded6907dbbcb5ef50d557e4c69db656commit hash:77d68471aded6907dbbcb5ef50d557e4c69db656commit hash:77d68471aded6907dbbcb5ef50d557e4c69db656commit hash:77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.1.2_5
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.1.2_5
06 Aug 2022 22:23:11
commit hash:a93cd97f3c76f9d378f4a56f33cfaa5a04790bddcommit hash:a93cd97f3c76f9d378f4a56f33cfaa5a04790bddcommit hash:a93cd97f3c76f9d378f4a56f33cfaa5a04790bddcommit hash:a93cd97f3c76f9d378f4a56f33cfaa5a04790bdd files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-ete3: Add tests
3.1.2_5
07 Mar 2022 17:39:13
commit hash:2d8f8573167d49958b7fbf471f42a360a20227d8commit hash:2d8f8573167d49958b7fbf471f42a360a20227d8commit hash:2d8f8573167d49958b7fbf471f42a360a20227d8commit hash:2d8f8573167d49958b7fbf471f42a360a20227d8 files touched by this commit
Loïc Bartoletti (lbartoletti) search for other commits by this committer
devel/py-qt5, devel/py-sip: Update versions

- Update sip to 6.5.1
- Update PyQt5 to 5.15.6
- Update PyQtChart, PyQtNetworkAuth and PyQtWebengine to 5.15.5
- Update PyQtSip to 12.9.1
- Update PyQtBuilder to 1.12.2
- Add ${_MAKE_JOBS} for pyqt.mk (reported by Tatsuki Makino)

PR:		261685
Exp-run by:	antoine
3.1.2_4
27 Jan 2022 06:12:26
commit hash:4f0a5e1540c391610950d6ae9ce64ba0dd218d72commit hash:4f0a5e1540c391610950d6ae9ce64ba0dd218d72commit hash:4f0a5e1540c391610950d6ae9ce64ba0dd218d72commit hash:4f0a5e1540c391610950d6ae9ce64ba0dd218d72 files touched by this commit
Loïc Bartoletti (lbartoletti) search for other commits by this committer
PyQt: Update sip to 6.5.0, reintroduce sip4 and simplify PyQt framework.

SIP:
As mentioned in the update from sip to sip5, this is a transitional version
to remove what is deprecated in sip4.
Sip6 completely removes the deprecated parts.
Unfortunately, some ports — mostly cura things — can not use sip6, so we
reintroduce sip4.

PyQt:
At the same time, we took the opportunity to simplify PyQT and propose only one
package as for devel/pyside2. */py-qt5-* have been merged — excepted chart,
networkauth and webengine — into devel/py-qt5-pyqt.

This allows us to be in adequacy with the packages that the author of these
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.1.2_4
07 Apr 2021 08:09:01
commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
3.1.2_4
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
3.1.2_4
16 Mar 2021 09:29:54
Revision:568547Original commit files touched by this commit
lbartoletti search for other commits by this committer
PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1

PR:		254218
Exp-run by:	antoine
3.1.2_3
08 Mar 2021 06:49:18
Revision:567825Original commit files touched by this commit
lbartoletti search for other commits by this committer
PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0

* PyQt5: update to 5.15.3

This is a minor feature and bug-fix release. There are corresponding releases of
the other PyQt5-related packages.

 - Added the missing QImage.setAlphaChannel().
 - Support for the QtNetworkAuth library has been moved to a separate
PyQtNetworkAuth package.
 - Wheels no longer bundle the corresponding Qt libraries and instead
automatically install them from an external wheel.

* QScintilla2: update to 2.12.0

This adds support for Qt6 and removes support for Qt4.

 - Change the new distname (again)i due to a conflict
 - Use the new sip-build system

* devel/py-qtbuilder: update to 1.9.0
* devel/py-sip: fix flavor for sip-distinfo

PR:		253865
Exp-run by:	antoine
3.1.2_2
15 Dec 2020 17:56:00
Revision:558168Original commit files touched by this commit
lbartoletti search for other commits by this committer
Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to
12.8.1

PR:		251764
Exp-run by: antoine
3.1.2_1
08 Dec 2020 20:03:07
Revision:557300Original commit files touched by this commit
lbartoletti search for other commits by this committer
Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0
This commit combines several updates.

- Update Qt to 5.12.2
- Update PyQt to 5.15.1
- Since PySide 5.15.1 is broken with Qt 5.15.2, so PySide and Shiboken are also
updated to 5.15.2.
- Update sip to 5.4.0

SIP is a collection of tools  to create Python bindings for C and C++ libraries
and used by PyQt and wxPython. There are some changes with sip5 [1]:
- python 3.5+ is required
- sip drops support of old deprecated methods as sipdistutils & cie.
- this version breaks also PyQt5 extension ABI. SIP files will be installed in
${PYTHON_SITELIBDIR}/PyQt${_PYQT_VERSION}/bindings
- some ports will use the new pyqtbuilder package with the pyproject.toml setup.
Instead if the project have a setup.py, you should use sip-build to build it.
- if a port needs sip, it should also needs pysip. BTW, py-qt5-core requires
pysip, so that should be enough for PyQt packages.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.1.2_1
05 Oct 2020 15:50:04
Revision:551499Original commit files touched by this commit
lbartoletti search for other commits by this committer
Update PyQt to 5.15.0, py-sip to 4.19.24 and qscintilla2 to 2.11.5

- Update PyQt to 5.15.0, py-sip to 4.19.24 and qscintilla2 to 2.11.5
- Use pypi for PYQT [1]
- Add devel/py-qt5-sip (Don't use it for now. It will be used in future updates
of PyQt with py-sip >= 5)
- Add missing py-qt5 ports: comms/py-qt5-sensors, devel/py-qt5-location,
devel/py-qt5-remoteobjects, net/py-qt5-networkauth
- Strip libs
- Refactor *_PATH and *_PORT parts

[1] RiverBankComputing doesn't offer links to download latest version of some
ports

PR:		247369
Reviewed by:	tcberner
Differential Revision:	https://reviews.freebsd.org/D25749
Exp-run by:	antoine
3.1.2
02 Sep 2020 03:54:05
Revision:547317Original commit files touched by this commit
yuri search for other commits by this committer
biology/py-ete3: Update 3.1.1 -> 3.1.2

Reported by:	portscout
3.1.1
16 May 2020 00:13:09
Revision:535339Original commit files touched by this commit
yuri search for other commits by this committer
New port: biology/py-ete3: Framework for the analysis and visualization of trees

Number of commits found: 15