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Port details
py-fastTSNE Fast, parallel implementations of t-SNE
0.2.13_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
0.2.13Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-15 09:03:21
Last Update: 2019-05-08 17:05:53
SVN Revision: 501030
Also Listed In: python
License: BSD3CLAUSE
Fast, parallel implementations of t-SNE allows, for example, in one case
to visualize 160,796 single cell transcriptomes from the mouse nervous system
computed in under 2 minutes using FFT accelerated interpolation and approximate
nearest neighbors.

WWW: https://github.com/pavlin-policar/fastTSNE
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • py36-fastTSNE>0:biology/py-fastTSNE

To install the port: cd /usr/ports/biology/py-fastTSNE/ && make install clean
To add the package: pkg install py36-fastTSNE

PKGNAME: py36-fastTSNE

Package flavors (<flavor>: <package>)
  • py36: py36-fastTSNE

distinfo:

TIMESTAMP = 1544862153
SHA256 (fastTSNE-0.2.13.tar.gz) = c602acf5e61f80bdda1bdfe91838ec89d7fdbdbb072e54c0d8da31c35fc964a0
SIZE (fastTSNE-0.2.13.tar.gz) = 687321


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-setuptools>0 : devel/py-setuptools@py36
  3. python3.6 : lang/python36
Runtime dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-numba>=0.38.1 : devel/py-numba@py36
  3. py36-scipy>0 : science/py-scipy@py36
  4. py36-scikit-learn>=0.20.0 : science/py-scikit-learn@py36
  5. py36-setuptools>0 : devel/py-setuptools@py36
  6. python3.6 : lang/python36
Library dependencies:
  1. libfftw3.so : math/fftw3
  2. libomp.so : devel/openmp

This port is required by:

for Run
Configuration Options
     No options to configure

USES:
localbase:ldflags python:3.5+

Master Sites:
  1. https://files.pythonhosted.org/packages/source/f/fastTSNE/
  2. https://pypi.org/packages/source/f/fastTSNE/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 3

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
08 May 2019 16:05:53
Original commit files touched by this commit  0.2.13_1
Revision:501030
jbeich search for other commits by this committer
devel/openmp: phase out

- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767
31 Mar 2019 16:57:55
Original commit files touched by this commit  0.2.13
Revision:497430
yuri search for other commits by this committer
biology/py-fastTSNE: Add the PORTSCOUT line
15 Dec 2018 08:58:05
Original commit files touched by this commit  0.2.13
Revision:487491
yuri search for other commits by this committer
New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNE

Number of commits found: 3

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