| Port details |
- py-gffutils Work with GFF and GTF files in a flexible database framework
- 0.10.1 biology
 =0      0.10.1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2018-10-19 02:07:07
- Last Update: 2021-04-07 08:09:01
- Commit Hash: cf118cc
- Also Listed In: python
- License: MIT
- Description:
- gffutils is a Python package for working with and manipulating the GFF and GTF
format files typically used for genomic annotations. Files are loaded into a
sqlite3 database, allowing much more complex manipulation of hierarchical
features (e.g., genes, transcripts, and exons) than is possible with plain-text
methods alone.
WWW: https://github.com/daler/gffutils
- SVNWeb : git : Homepage
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}gffutils>0:biology/py-gffutils@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-gffutils/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-gffutils
- pkg install py38-gffutils
NOTE: This is a Python port. Instead of py38-gffutils listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py38-gffutils
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1592273301
SHA256 (gffutils-0.10.1.tar.gz) = a8fc39006d7aa353147238160640e2210b168f7849cb99896be3fc9441e351cb
SIZE (gffutils-0.10.1.tar.gz) = 1542433
- Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py38-setuptools>0 : devel/py-setuptools@py38
- python3.8 : lang/python38
- Runtime dependencies:
-
- py38-argcomplete>=1.9.4 : devel/py-argcomplete@py38
- py38-argh>=0.26.2 : devel/py-argh@py38
- py38-pyfaidx>=0.5.5.2 : biology/py-pyfaidx@py38
- py38-simplejson>0 : devel/py-simplejson@py38
- py38-six>=1.12.0 : devel/py-six@py38
- py38-setuptools>0 : devel/py-setuptools@py38
- python3.8 : lang/python38
- There are no ports dependent upon this port
- Configuration Options:
- No options to configure
- Options name:
- biology_py-gffutils
- USES:
- python:3.6+
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 7
| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Date | By | Description |
|---|
07 Apr 2021 08:09:01
  0.10.1
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
06 Apr 2021 14:31:07
0.10.1
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
14 Jul 2020 07:59:28
  0.10.1
|
antoine |
Unbreak bulk -a |
16 Jun 2020 02:10:08
0.10.1
|
yuri |
biology/py-gffutils: Update 0.10 -> 0.10.1 |
31 Dec 2019 05:16:09
0.10
|
yuri |
biology/py-gffutils: Update 0.9 -> 0.10
Reported by: portscout |
10 Apr 2019 06:18:32
0.9_1
|
antoine |
Bump a few PORTREVISIONs after r498529
With hat: portmgr |
19 Oct 2018 02:06:54
0.9
|
yuri |
New port: biology/py-gffutils: Work with GFF and GTF files in a flexible
database framework |
Number of commits found: 7
|
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