notbugIf you buy from Amazon USA, please support us by using this link.
Port details
py-gffutils Work with GFF and GTF files in a flexible database framework
0.9 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-10-19 02:07:07
Last Update: 2018-10-19 03:06:54
SVN Revision: 482400
Also Listed In: python
License: MIT
gffutils is a Python package for working with and manipulating the GFF and GTF
format files typically used for genomic annotations. Files are loaded into a
sqlite3 database, allowing much more complex manipulation of hierarchical
features (e.g., genes, transcripts, and exons) than is possible with plain-text
methods alone.

WWW: https://github.com/daler/gffutils
SVNWeb : Homepage : PortsMon

There is no configure plist information for this port.

Dependency line: py27-gffutils>0:biology/py-gffutils


To install the port: cd /usr/ports/biology/py-gffutils/ && make install clean
To add the package: pkg install py27-gffutils

PKGNAME: py27-gffutils

There is no flavor information for this port.

distinfo:

TIMESTAMP = 1539913631
SHA256 (gffutils-0.9.tar.gz) = e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b
SIZE (gffutils-0.9.tar.gz) = 1537395


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. py27-setuptools>0 : devel/py-setuptools@py27
  2. python2.7 : lang/python27
Runtime dependencies:
  1. py27-argcomplete>0 : devel/py-argcomplete@py27
  2. py27-argh>0 : devel/py-argh@py27
  3. py27-pyfaidx>0 : biology/py-pyfaidx@py27
  4. py27-simplejson>0 : devel/py-simplejson@py27
  5. py27-six>0 : devel/py-six@py27
  6. py27-setuptools>0 : devel/py-setuptools@py27
  7. python2.7 : lang/python27
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
python

Master Sites:
  1. https://files.pythonhosted.org/packages/source/g/gffutils/
  2. https://pypi.org/packages/source/g/gffutils/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 Oct 2018 02:06:54
Original commit files touched by this commit  0.9
Revision:482400
yuri search for other commits by this committer
New port: biology/py-gffutils: Work with GFF and GTF files in a flexible
database framework

Number of commits found: 1

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
python37Mar 26
libXdmcp*Mar 22
gitlab-ceMar 21
wordpressMar 21
wordpressMar 21
wordpressMar 21
wordpressMar 21
wordpressMar 21
giteaMar 20
gitlab-ceMar 20
firefoxMar 19
firefox-esrMar 19
libxulMar 19
linux-firefoxMar 19
linux-seamonkeyMar 19

12 vulnerabilities affecting 152 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2019-03-26 18:13:05


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 36333
Broken 115
Deprecated 144
Ignore 335
Forbidden 3
Restricted 163
No CDROM 74
Vulnerable 35
Expired 13
Set to expire 119
Interactive 0
new 24 hours 3
new 48 hours12
new 7 days37
new fortnight73
new month152

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2019 Dan Langille. All rights reserved.