notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

/commits.php is going away

I'm proposing to take /commits.php away - it mainly duplicates the home page. Details in this GitHub issue.
Port details
py-macs2 Identify transcription factor binding sites
2.2.7.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.2.7.1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-12-02 20:46:35
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
Also Listed In: python
License: BSD3CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR}
To install the port: cd /usr/ports/biology/py-macs2/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-macs2
  • pkg install py38-macs2
NOTE: This is a Python port. Instead of py38-macs2 listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-macs2
Package flavors (<flavor>: <package>)
  • py38: py38-macs2
distinfo:
Packages (timestamps in pop-ups are UTC):
py27-macs2
ABIlatestquarterly
FreeBSD:11:aarch642.1.0.p20170505_1-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch642.1.0.p20170505_1-
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-macs2
ABIlatestquarterly
FreeBSD:11:aarch64-2.2.7.1
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-2.2.7.1
FreeBSD:13:aarch642.2.7.1-
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.2.7.1-
 
py38-macs2
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd642.2.7.12.2.7.1
FreeBSD:11:armv6--
FreeBSD:11:i3862.2.7.12.2.7.1
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-2.2.7.1
FreeBSD:12:amd642.2.7.12.2.7.1
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3862.2.7.12.2.7.1
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-2.2.7.1
FreeBSD:13:amd642.2.7.12.2.7.1
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3862.2.7.12.2.7.1
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch642.2.7.1-
FreeBSD:14:amd642.2.7.1-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3862.2.7.1-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  2. cython-3.8 : lang/cython@py38
  3. py38-setuptools>0 : devel/py-setuptools@py38
  4. python3.8 : lang/python38
Runtime dependencies:
  1. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  2. py38-setuptools>0 : devel/py-setuptools@py38
  3. python3.8 : lang/python38
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/taoliu/MACS/tar.gz/v2.2.7.1?dummy=/
Collapse this list.

Number of commits found: 11

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  2.2.7.1
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.2.7.1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
14 Apr 2020 12:13:55
Original commit files touched by this commit Revision:531674  2.2.7.1
jwb search for other commits by this committer
biology/py-macs2: Upgrade to 2.2.7.1

Bug fix release

Reported by:    portscout
09 Feb 2020 14:23:43
Original commit files touched by this commit Revision:525659  2.2.6_1
jwb search for other commits by this committer
biology/py-macs2: Bump revision for previous run dep addition
09 Feb 2020 14:21:29
Original commit files touched by this commit Revision:525658  2.2.6
jwb search for other commits by this committer
biology/py-macs2: Add missing numpy run depend
11 Jan 2020 14:20:00
Original commit files touched by this commit Revision:522687  2.2.6
jwb search for other commits by this committer
biology/py-macs2: Upgrade to 2.2.6

Bug fixes and performance improvements
Now require python 3.6+

Reported by:    portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  2.1.0.p20170505_3
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  2.1.0.p20170505_2
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
10 Mar 2018 17:46:06
Original commit files touched by this commit Revision:464084  2.1.0.p20170505_1
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
05 Dec 2017 02:59:01
Original commit files touched by this commit Revision:455561  2.1.0.p20170505
jwb search for other commits by this committer
biology/py-macs2: Restrict to python 2.7.
Use ${PYNUMPY} per mat suggestion.

Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D13350
02 Dec 2017 20:46:28
Original commit files touched by this commit Revision:455383  2.1.0.p20170505  Sanity Test Failure
jwb search for other commits by this committer
[new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)
sequences

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13322

Number of commits found: 11