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Port details
py-multiqc Aggregate bioinformatics analysis reports across samples and tools
1.10 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.10Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-09-23 16:09:36
Last Update: 2021-05-10 20:13:20
Commit Hash: 1d44af5
Also Listed In: python
License: GPLv3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR}
To install the port: cd /usr/ports/biology/py-multiqc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-multiqc
  • pkg install py38-multiqc
NOTE: This is a Python port. Instead of py38-multiqc listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-multiqc
Package flavors (<flavor>: <package>)
  • py38: py38-multiqc
distinfo:
Packages (timestamps in pop-ups are UTC):
py27-multiqc
ABIlatestquarterly
FreeBSD:11:aarch64-1.8
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-multiqc
ABIlatestquarterly
FreeBSD:11:aarch64-1.8
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch641.8-
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.10-
 
py38-multiqc
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd641.101.10
FreeBSD:11:armv6--
FreeBSD:11:i3861.101.10
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.10
FreeBSD:12:amd641.101.10
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3861.101.10
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64-1.10
FreeBSD:13:amd641.101.10
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.101.10
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch641.10-
FreeBSD:14:amd641.10-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.10-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-setuptools>0 : devel/py-setuptools@py38
  2. python3.8 : lang/python38
Runtime dependencies:
  1. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  2. py38-click>0 : devel/py-click@py38
  3. py38-future>0.14.0 : devel/py-future@py38
  4. py38-coloredlogs>0 : devel/py-coloredlogs@py38
  5. py38-matplotlib>=2.1.1 : math/py-matplotlib@py38
  6. py38-markdown>0 : textproc/py-markdown@py38
  7. py38-networkx>0 : math/py-networkx@py38
  8. py38-rich>0 : textproc/py-rich@py38
  9. py38-yaml>=4 : devel/py-yaml@py38
  10. py38-requests>0 : www/py-requests@py38
  11. py38-simplejson>0 : devel/py-simplejson@py38
  12. py38-Jinja2>=2.9 : devel/py-Jinja2@py38
  13. py38-lzstring>0 : archivers/py-lzstring@py38
  14. py38-spectra>=0.0.10 : graphics/py-spectra@py38
  15. py38-colormath>0 : math/py-colormath@py38
  16. py38-setuptools>0 : devel/py-setuptools@py38
  17. python3.8 : lang/python38
This port is required by:
for Run
  1. biology/biostar-tools

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/m/multiqc/
  2. https://pypi.org/packages/source/m/multiqc/
Collapse this list.

Number of commits found: 8

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 May 2021 20:13:20
 files touched by this commit commit hash:1d44af58980136b882d146f21d8776943a14c5eb  1.10
thierry search for other commits by this committer
math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.10
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.10
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
20 Mar 2021 14:25:48
Original commit files touched by this commit Revision:568866  1.10
jwb search for other commits by this committer
biology/py-multiqc: Update to 1.10

Numerous new features, a few bug fixes since 1.9

Reported by:    portscout
05 Feb 2021 01:37:04
Original commit files touched by this commit Revision:564072  1.9
jwb search for other commits by this committer
biology/py-multiqc: Update to 1.9

Fix runtime error due to incompatibility of 1.8 with latest matplotlib
Drop python2 support
Numerous new features and bug fixes
19 Sep 2020 14:15:43
Original commit files touched by this commit Revision:548989  1.8
antoine search for other commits by this committer
Unbreak bulk -a
26 Nov 2019 16:25:09
Original commit files touched by this commit Revision:518470  1.8
jwb search for other commits by this committer
biology/py-multiqc: Upgrade to 1.8

Major enhancements including 6 new modules and improvements to existing modules
Numerous minor fixes and enhancements

Reported by:    portscout
23 Sep 2019 16:09:30
Original commit files touched by this commit Revision:512646  1.7
jwb search for other commits by this committer
biology/py-multiqc: Aggregate bioinformatics analysis reports

MultiQC searches a given directory for analysis logs and compiles an HTML
report. It's a general use tool, perfect for summarising the output from
numerous bioinformatics tools.

Number of commits found: 8