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Things are slow!

Some of the pages ont the website are slow. I know diskio is way up. I don't know what it is but it's been going on for about three weeks. It might have been a change to the zpool recordsize on the PostgreSQL database dataset.

One way to know: copy the dataset to another dataset with the original recordsize and use that. I hope can get to that later this week.

I have not tackled the issue yet because I've been concentrating on the BSDCan and PGCon calls for papers.

Port details
py-multiqc Aggregate bioinformatics analysis reports across samples and tools
1.8 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.7Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-09-23 16:09:36
Last Update: 2019-11-26 16:25:09
SVN Revision: 518470
Also Listed In: python
License: GPLv3
Description:
SVNWeb : Homepage

There is no configure plist information for this port.

Dependency lines:
  • py36-multiqc>0:biology/py-multiqc
To install the port: cd /usr/ports/biology/py-multiqc/ && make install clean
To add the package: pkg install py36-multiqc
PKGNAME: py36-multiqc
Package flavors (<flavor>: <package>)
  • py36: py36-multiqc
  • py27: py27-multiqc
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py36-setuptools>0 : devel/py-setuptools@py36
  2. python3.6 : lang/python36
Runtime dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-click>0 : devel/py-click@py36
  3. py36-future>0.14.0 : devel/py-future@py36
  4. py36-coloredlogs>0 : devel/py-coloredlogs@py36
  5. py36-matplotlib>=2.1.1 : math/py-matplotlib@py36
  6. py36-markdown>0 : textproc/py-markdown@py36
  7. py36-yaml>0 : devel/py-yaml@py36
  8. py36-requests> : www/py-requests@py36
  9. py36-simplejson>0 : devel/py-simplejson@py36
  10. py36-Jinja2>=2.9 : devel/py-Jinja2@py36
  11. py36-lzstring>0 : archivers/py-lzstring@py36
  12. py36-spectra>=0.0.10 : graphics/py-spectra@py36
  13. py36-colormath>0 : math/py-colormath@py36
  14. py36-setuptools>0 : devel/py-setuptools@py36
  15. python3.6 : lang/python36
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://files.pythonhosted.org/packages/source/m/multiqc/
  2. https://pypi.org/packages/source/m/multiqc/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2017-11-30
    Affects: */py*
    Author: mat@FreeBSD.org
    Reason: 
      Ports using Python via USES=python are now flavored.  All the py3-* ports
      have been removed and folded into their py-* master ports.
    
      People using Poudriere 3.2+ and binary packages do not have to do anything.
    
      For other people, to build the Python 3.6 version of, for example,
      databases/py-gdbm, you need to run:
    
        # make FLAVOR=py36 install
    
    

Number of commits found: 2

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Nov 2019 16:25:09
Original commit files touched by this commit  1.8
Revision:518470
jwb search for other commits by this committer
biology/py-multiqc: Upgrade to 1.8

Major enhancements including 6 new modules and improvements to existing modules
Numerous minor fixes and enhancements

Reported by:    portscout
23 Sep 2019 16:09:30
Original commit files touched by this commit  1.7
Revision:512646
jwb search for other commits by this committer
biology/py-multiqc: Aggregate bioinformatics analysis reports

MultiQC searches a given directory for analysis logs and compiles an HTML
report. It's a general use tool, perfect for summarising the output from
numerous bioinformatics tools.

Number of commits found: 2

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