Port details on branch 2022Q3 |
- py-multiqc Aggregate bioinformatics analysis reports across samples and tools
- 1.15 biology =0 1.15Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2019-09-23 16:09:36
- Last Update: 2023-08-05 16:18:37
- Commit Hash: a084c0b
- Also Listed In: python
- License: GPLv3
- WWW:
- https://pypi.python.org/pypi/multiqc
- Description:
- MultiQC searches a given directory for analysis logs and compiles an HTML
report. It's a general use tool, perfect for summarising the output from
numerous bioinformatics tools.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-multiqc/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-multiqc
- pkg install py39-multiqc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-multiqc listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-multiqc
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1691243629
SHA256 (multiqc-1.15.tar.gz) = ce5359a12226cf4ce372c6fdad142cfe2ae7501ffa97ac7aab544ced4db5ea3c
SIZE (multiqc-1.15.tar.gz) = 1077075
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
- py39-rich-click>0 : devel/py-rich-click@py39
- py39-future>0.14.0 : devel/py-future@py39
- py39-coloredlogs>0 : devel/py-coloredlogs@py39
- py39-matplotlib>=2.1.1 : math/py-matplotlib@py39
- py39-markdown>0 : textproc/py-markdown@py39
- py39-networkx>0 : math/py-networkx@py39
- py39-rich>0 : textproc/py-rich@py39
- py39-yaml>=4 : devel/py-yaml@py39
- py39-requests>0 : www/py-requests@py39
- py39-simplejson>0 : devel/py-simplejson@py39
- py39-Jinja2>=2.9 : devel/py-Jinja2@py39
- py39-lzstring>0 : archivers/py-lzstring@py39
- py39-spectra>=0.0.10 : graphics/py-spectra@py39
- py39-colormath>0 : math/py-colormath@py39
- py39-kiwisolver>0 : math/py-kiwisolver@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- This port is required by:
- for Run
-
- biology/atac-seq
- biology/biostar-tools
- biology/chip-seq
- biology/rna-seq
Configuration Options:
- No options to configure
- Options name:
- biology_py-multiqc
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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