| Port details on branch 2024Q2 |
- seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- 2.8.0_3 biology
 =0      2.8.0_3Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2024-05-13 18:30:44
- Last Update: 2024-06-15 09:57:50
- Commit Hash: aa2919f
- License: MIT
- WWW:
- https://bioinf.shenwei.me/seqkit/
- Description:
- FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and
protein sequences. Common manipulations of FASTA/Q file include converting,
searching, filtering, deduplication, splitting, shuffling, and sampling.
Existing tools only implement some of these manipulations, and not particularly
efficiently, and some are only available for certain operating systems.
Furthermore, the complicated installation process of required packages and
running environments can render these programs less user friendly.
SeqKit is a cross-platform ultrafast comprehensive toolkit for FASTA/Q
processing. SeqKit provides executable binary files for all major operating
systems, including Windows, Linux, and Mac OS X, and can be directly used
without any dependencies or pre-configurations. SeqKit demonstrates competitive
performance in execution time and memory usage compared to similar tools. The
efficiency and usability of SeqKit enable researchers to rapidly accomplish
common FASTA/Q file manipulations.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/seqkit/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/seqkit
- pkg install seqkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: seqkit
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1710220176
SHA256 (go/biology_seqkit/seqkit-v2.8.0/v2.8.0.mod) = 5a4eefdd7e32176c2f257c61a92713f1ed4198aa941ef7a9c2af5d3299b13832
SIZE (go/biology_seqkit/seqkit-v2.8.0/v2.8.0.mod) = 2514
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- go121 : lang/go121
- Fetch dependencies:
-
- go121 : lang/go121
- ca_root_nss>0 : security/ca_root_nss
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_seqkit
- USES:
- go:modules zip
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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