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Bot filter coming soon

To deter bots pegging the database CPU to 100%, a bot testing filter to be added to the website. This should not affect newsfeeds etc. Anubis seems light-weight - it is already in use within the FreeBSD Project. This notice is just a heads up in case you see something odd. This notice will be updated after Anubis is installed.

Category listing - biology: ports with commits on branch 2024Q2
Software related to biology. - Number of ports in this category (with commits on branch 2024Q2): 8

Ports marked with a * actually reside within another category but have biology listed as a secondary category.

kmcp Accurate metagenomic profiling & fast large-scale genome searching
0.9.4_6 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.9.4_6Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-04-15 08:39:30
License: MIT
Dependency lines:
  • kmcp>0:biology/kmcp
migrate Program to estimate population sizes and migration rates
5.0.6_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.0.6_2Version of this port present on the latest quarterly branch.
Maintainer: eduardo@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-04-12 20:33:06
License: MIT
Dependency lines:
  • migrate>0:biology/migrate
ncbi-entrez-direct Access to the NCBI's suite of interconnected databases
14.9.20210423_22 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 14.9.20210423_22Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-04-15 08:39:30
Also Listed In: perl5
License: PD
Dependency lines:
  • ncbi-entrez-direct>0:biology/ncbi-entrez-direct
nest Simulator for spiking neural network models
3.5_1* search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.5_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-05-26 22:00:19
Also Listed In: science
License: GPLv2
Dependency lines:
  • nest>0:science/nest
seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
2.8.0_3 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.8.0_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-05-13 18:30:44
License: MIT
Dependency lines:
  • seqkit>0:biology/seqkit
spoa C++ implementation of the partial order alignment (POA) algorithm
4.1.0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.1.0Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-04-28 07:21:06
License: MIT
Dependency lines:
  • spoa>0:biology/spoa
taxonkit Practical and efficient NCBI taxonomy toolkit
0.16.0_4 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.16.0_4Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-04-15 08:39:30
License: MIT
Dependency lines:
  • taxonkit>0:biology/taxonkit
unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers
0.19.1_14 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.19.1_14Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-04-15 08:39:30
License: MIT
Dependency lines:
  • unikmer>0:biology/unikmer
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