Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.4_6 0.9.4_16Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-04-15 08:39:30

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• kmcp>0:biology/kmcp

migrate Program to estimate population sizes and migration rates

5.0.6_2 5.0.6_2Version of this port present on the latest quarterly branch.

Maintainer: eduardo@FreeBSD.org

Port Added: 2024-04-12 20:33:06

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• migrate>0:biology/migrate

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_22 14.9.20210423_32Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2024-04-15 08:39:30

Also Listed In: perl5

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

nest Simulator for spiking neural network models

3.5_1^* 3.5_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-05-26 22:00:19

Also Listed In: science

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• nest>0:science/nest

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.8.0_3 2.10.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-05-13 18:30:44

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqkit>0:biology/seqkit

spoa C++ implementation of the partial order alignment (POA) algorithm

4.1.0 4.1.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-04-28 07:21:06

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• spoa>0:biology/spoa

taxonkit Practical and efficient NCBI taxonomy toolkit

0.16.0_4 0.19.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-04-15 08:39:30

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.19.1_14 0.20.0_11Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-04-15 08:39:30

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• unikmer>0:biology/unikmer