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Port details
spoa C++ implementation of the partial order alignment (POA) algorithm
4.0.7_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.0.7_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-01-19 09:28:06
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: MIT
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (15 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/spoa-4.0.7_2/catalog.mk
  3. /usr/local/share/licenses/spoa-4.0.7_2/LICENSE
  4. /usr/local/share/licenses/spoa-4.0.7_2/MIT
  5. bin/spoa
  6. include/spoa/alignment_engine.hpp
  7. include/spoa/architectures.hpp
  8. include/spoa/graph.hpp
  9. include/spoa/spoa.hpp
  10. lib/libspoa.so
  11. lib/libspoa.so.7.0.0
  12. libdata/pkgconfig/spoa-1.pc
  13. @owner
  14. @group
  15. @mode
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Dependency lines:
  • For RUN/BUILD depends:
    • spoa>0:biology/spoa
  • For LIB depends:
    • libspoa.so:biology/spoa
To install the port: cd /usr/ports/biology/spoa/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/spoa
  • pkg install spoa
PKGNAME: spoa
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
spoa
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd644.0.7_24.0.7_2
FreeBSD:11:armv6--
FreeBSD:11:i3864.0.7_24.0.7_2
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd644.0.7_24.0.7_2
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3864.0.7_24.0.7_2
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd644.0.7_24.0.7_2
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3864.0.7_24.0.7_2
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-4.0.7_2
FreeBSD:14:aarch64--
FreeBSD:14:amd644.0.7_2-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3864.0.7_2-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc644.0.7_2-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bioparser>0 : biology/bioparser
  2. nucleic_acid.hpp : biology/biosoup
  3. cereal>0 : devel/cereal
  4. simde>0 : devel/simde
  5. cmake : devel/cmake
  6. ninja : devel/ninja
Runtime dependencies:
  1. cereal>0 : devel/cereal
Library dependencies:
  1. libcpu_features.so : devel/cpu_features
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/rvaser/spoa/tar.gz/4.0.7?dummy=/
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Number of commits found: 5

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  4.0.7_2
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  4.0.7_2
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
04 Mar 2021 19:18:54
Original commit files touched by this commit Revision:567333  4.0.7_2
pkubaj search for other commits by this committer
biology/spoa: fix build on non-x86

In file included from
/wrkdirs/usr/ports/biology/spoa/work/spoa-4.0.7/src/dispatcher.cpp:7:
/usr/local/include/cpuinfo_x86.h:228:2: error: "Including cpuinfo_x86.h from a
non-x86 target."
#error "Including cpuinfo_x86.h from a non-x86 target."
19 Feb 2021 09:22:30
Original commit files touched by this commit Revision:566037  4.0.7_2
yuri search for other commits by this committer
biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDS

Reported by:	fallout
19 Jan 2021 09:28:01
Original commit files touched by this commit Revision:562036  4.0.7
yuri search for other commits by this committer
New port: biology/spoa: C++ implementation of the partial order alignment (POA)
algorithm

Number of commits found: 5