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Port details
star Spliced Transcripts Alignment to a Reference
2.7.3.a_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.7.3.a_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-04-21 20:31:13
Last Update: 2021-04-07 08:09:01
Commit Hash: cf118cc
License: GPLv3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
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  1. bin/STAR
  2. /usr/local/share/licenses/rna-STAR-2.7.3.a_1/catalog.mk
  3. /usr/local/share/licenses/rna-STAR-2.7.3.a_1/LICENSE
  4. /usr/local/share/licenses/rna-STAR-2.7.3.a_1/GPLv3
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Dependency lines:
  • rna-STAR>0:biology/star
To install the port: cd /usr/ports/biology/star/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/star
  • pkg install rna-STAR
PKGNAME: rna-STAR
Flavors: there is no flavor information for this port.
NOT_FOR_ARCHS: i386 powerpc
distinfo:
Packages (timestamps in pop-ups are UTC):
rna-STAR
ABIlatestquarterly
FreeBSD:11:aarch64-2.7.3.a
FreeBSD:11:amd642.7.3.a_12.7.3.a_1
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-2.7.3.a_1
FreeBSD:12:amd642.7.3.a_12.7.3.a_1
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-2.7.3.a_1
FreeBSD:13:aarch642.7.3.a_12.7.3.a_1
FreeBSD:13:amd642.7.3.a_12.7.3.a_1
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc642.7.3.a2.7.3.a_1
FreeBSD:14:aarch642.7.3.a_1-
FreeBSD:14:amd642.7.3.a_1-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.7.3.a_1-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/alexdobin/STAR/tar.gz/2.7.3a?dummy=/
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Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  2.7.3.a_1
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.7.3.a_1
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
11 Jan 2021 17:39:52
Original commit files touched by this commit Revision:561235  2.7.3.a_1
jwb search for other commits by this committer
biology/star: Drop dependency on gcc

Replace compiler:openmp with compiler:c++11-lang and localbase

PR:             port/247753, ports/252379
09 Apr 2020 12:43:03
Original commit files touched by this commit Revision:531206  2.7.3.a
jwb search for other commits by this committer
biology/star: Upgrade to 2.7.3a

Several compatibility and feature enhancements
06 Oct 2019 22:18:31
Original commit files touched by this commit Revision:513915  2.7.2.d
jwb search for other commits by this committer
biology/star: Upgrade to 2.7.2d

Fix chimeric output bug.

Numerous other minor fixes and enhancements since 2.7.0.

Reported by:    portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  2.7.0.f_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
02 May 2019 00:39:51
Original commit files touched by this commit Revision:500629  2.7.0.f
jwb search for other commits by this committer
biology/star: Force newer GCC on platforms with GCC 4.2 base

PR:             237700
Submitted by:   pkubaj
23 Apr 2019 15:03:29
Original commit files touched by this commit Revision:499763  2.7.0.f
jwb search for other commits by this committer
biology/star: Modify PKGBASE to avoid conflict with archivers/star
21 Apr 2019 20:30:56
Original commit files touched by this commit Revision:499592  2.7.0.f
jwb search for other commits by this committer
biology/star: Spliced Transcripts Alignment to a Reference

STAR is an extremely fast RNA-seq aligner, an alternative to tophat2,
hisat2, bowtie, subread, etc.

Number of commits found: 9