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I started running short on disk space for the non-production FreshPorts hosts. This time, I have decided to ask for donations. See my recent blog post which points to my Patreon account.
Server is being updated to FreeBSD 14.3 as you read this... and it is done.
Commit processing is stalled - it is a jail issue. I will work on it later today. 2025-09-17 12:17 UTC - It has been fixed. Sometime before 17:27 UTC.
Port details on branch 2023Q3
taxonkit Practical and efficient NCBI taxonomy toolkit
0.14.2_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.14.2_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-08-04 15:02:22
Last Update: 2023-09-08 14:39:12
Commit Hash: 793b61c
License: MIT
WWW:
https://bioinf.shenwei.me/taxonkit/
Description:
TaxonKit allows to: * list taxonomic subtrees (TaxIds) * query taxonomic lineage of given TaxIds * reformat lineage in canonical ranks * convert scientific names to TaxIds * filter TaxIds by taxonomic rank range * compute lowest common ancestor (LCA) for TaxIds * create TaxId changelog from dump archives
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
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  1. bin/taxonkit
  2. /usr/local/share/licenses/taxonkit-0.14.2_2/catalog.mk
  3. /usr/local/share/licenses/taxonkit-0.14.2_2/LICENSE
  4. /usr/local/share/licenses/taxonkit-0.14.2_2/MIT
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USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • taxonkit>0:biology/taxonkit
To install the port:
cd /usr/ports/biology/taxonkit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/taxonkit
  • pkg install taxonkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: taxonkit
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1681528717 SHA256 (go/biology_taxonkit/taxonkit-v0.14.2/v0.14.2.mod) = 821f2ea553848ba4acd76e01d18c1026ed94979d59314a16d2c1dd958a1fff92 SIZE (go/biology_taxonkit/taxonkit-v0.14.2/v0.14.2.mod) = 1022

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SHA256 (go/biology_taxonkit/taxonkit-v0.14.2/v0.14.2.zip) = c02cbdd24e7c26b312b26fd63e0c1bf2de27fdab37d0905e8f473170e2031681 SIZE (go/biology_taxonkit/taxonkit-v0.14.2/v0.14.2.zip) = 1601649

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No package information for this port in our database
Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link: pkg-fallout
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. go120 : lang/go120
Fetch dependencies:
  1. go120 : lang/go120
  2. ca_root_nss>0 : security/ca_root_nss
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_taxonkit
USES:
go:modules zip
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://proxy.golang.org/github.com/shenwei356/taxonkit/@v/
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Number of commits found: 2

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.14.2_2
08 Sep 2023 14:39:12
commit hash: 793b61c98913da3088efd5af67684d2eded3e992commit hash: 793b61c98913da3088efd5af67684d2eded3e992commit hash: 793b61c98913da3088efd5af67684d2eded3e992commit hash: 793b61c98913da3088efd5af67684d2eded3e992 files touched by this commit		 Dmitri Goutnik (dmgk) search for other commits by this committer 
all: Bump PORTREVISION after lang/go120 update

Approved by:	ports-secteam (blanket)
0.14.2_1
04 Aug 2023 14:36:07
commit hash: e7d39fc40a601f25b64b6f73a05219343c290162commit hash: e7d39fc40a601f25b64b6f73a05219343c290162commit hash: e7d39fc40a601f25b64b6f73a05219343c290162commit hash: e7d39fc40a601f25b64b6f73a05219343c290162 files touched by this commit		 Dmitri Goutnik (dmgk) search for other commits by this committer 
all: Bump PORTREVISION after lang/go{119,120} update

Approved by:	ports-secteam (blanket)

Number of commits found: 2
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