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Commit processing is stalled - it is a jail issue. I will work on it later today. 2025-09-17 12:17 UTC - It has been fixed. Sometime before 17:27 UTC.
Category listing - biology: ports with commits on branch 2023Q3
Software related to biology. - Number of ports in this category (with commits on branch 2023Q3): 6

Ports marked with a * actually reside within another category but have biology listed as a secondary category.

kmcp Accurate metagenomic profiling & fast large-scale genome searching
0.9.2_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.9.2_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-08-04 15:02:22
License: MIT
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • kmcp>0:biology/kmcp
ncbi-entrez-direct Access to the NCBI's suite of interconnected databases
14.9.20210423_16 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 14.9.20210423_16Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-08-04 15:02:22
Also Listed In: perl5
License: PD
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • ncbi-entrez-direct>0:biology/ncbi-entrez-direct
seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
2.4.0_4 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.4.0_4Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-08-04 15:02:22
License: MIT
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • seqkit>0:biology/seqkit
taxonkit Practical and efficient NCBI taxonomy toolkit
0.14.2_2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.14.2_2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-08-04 15:02:22
License: MIT
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • taxonkit>0:biology/taxonkit
unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers
0.19.1_8 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.19.1_8Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-08-04 15:02:22
License: MIT
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • unikmer>0:biology/unikmer
vcflib C++ library and CLI tools for parsing and manipulating VCF files
1.0.7 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0.7Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-07-30 23:06:19
License: MIT
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • vcflib>0:biology/vcflib
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