Ports marked with a ^* actually reside within another category but have biology listed as a secondary category.

kmcp Accurate metagenomic profiling & fast large-scale genome searching

0.9.2_2 0.9.4_16Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-08-04 15:02:22

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• kmcp>0:biology/kmcp

ncbi-entrez-direct Access to the NCBI's suite of interconnected databases

14.9.20210423_16 14.9.20210423_32Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2023-08-04 15:02:22

Also Listed In: perl5

License: PD

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ncbi-entrez-direct>0:biology/ncbi-entrez-direct

seqkit Cross-platform and ultrafast toolkit for FASTA/Q file manipulation

2.4.0_4 2.10.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-08-04 15:02:22

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• seqkit>0:biology/seqkit

taxonkit Practical and efficient NCBI taxonomy toolkit

0.14.2_2 0.19.0_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-08-04 15:02:22

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• taxonkit>0:biology/taxonkit

unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers

0.19.1_8 0.20.0_11Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-08-04 15:02:22

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• unikmer>0:biology/unikmer

vcflib C++ library and CLI tools for parsing and manipulating VCF files

1.0.7 1.0.7Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2023-07-30 23:06:19

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• vcflib>0:biology/vcflib