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Port details
tinker General purpose molecular modelling package
7.1.3_3 biology on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Restricted RESTRICTED: author requests no distribution except from his FTP site

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: unknown
License: tinker
Tinker is a set of small programs for doing general purpose molecular
modeling calculations. Tools are included for energy minimizations,
geometry calculations, simulated annealing, molecular dynamics, and
molecular analysis calculations. Tools for converting coordinate sets
are also provided.  Tinker employs several force fields and minimization
techniques.

This port sets the maxatm value to 2500 atoms.  This should be
sufficient for most molecular systems.  Should you need to work with
larger systems you can set the maxatm parameter in the sizes.i file
located in the tinker/source directory and recompile.  Note that if it
is set too large that tinker programs will abort and core dump.

For more information about Tinker see:

WWW: http://dasher.wustl.edu/tinker/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (634 items)
  1. /usr/local/share/licenses/tinker-7.1.3_3/catalog.mk
  2. /usr/local/share/licenses/tinker-7.1.3_3/LICENSE
  3. /usr/local/share/licenses/tinker-7.1.3_3/tinker
  4. bin/alchemy
  5. bin/analyze_t
  6. bin/anneal
  7. bin/archive
  8. bin/bar
  9. bin/correlate
  10. bin/crystal
  11. bin/diffuse
  12. bin/distgeom
  13. bin/document
  14. bin/dynamic
  15. bin/gda
  16. bin/intedit
  17. bin/intxyz
  18. bin/minimize
  19. bin/minirot
  20. bin/minrigid
  21. bin/molxyz
  22. bin/monte
  23. bin/newton
  24. bin/newtrot
  25. bin/nucleic
  26. bin/optimize
  27. bin/optirot
  28. bin/optrigid
  29. bin/path
  30. bin/pdbxyz
  31. bin/polarize
  32. bin/poledit
  33. bin/potential
  34. bin/prmedit
  35. bin/protein
  36. bin/pss
  37. bin/pssrigid
  38. bin/pssrot
  39. bin/radial
  40. bin/saddle
  41. bin/scan
  42. bin/sniffer
  43. bin/spacefill
  44. bin/spectrum
  45. bin/superpose
  46. bin/sybylxyz
  47. bin/testgrad
  48. bin/testhess
  49. bin/testpair
  50. bin/testpol
  51. bin/testrot
  52. bin/timer
  53. bin/timerot
  54. bin/torsfit
  55. bin/valence
  56. bin/vibbig
  57. bin/vibrate
  58. bin/vibrot
  59. bin/xtalfit
  60. bin/xtalmin
  61. bin/xyzedit
  62. bin/xyzint
  63. bin/xyzpdb
  64. bin/xyzsybyl
  65. share/doc/tinker/0README
  66. share/doc/tinker/ffe-guide.pdf
  67. share/doc/tinker/guide.pdf
  68. share/doc/tinker/license.pdf
  69. share/doc/tinker/license.txt
  70. share/doc/tinker/summary.pdf
  71. share/doc/tinker/summary.txt
  72. share/examples/tinker/0README
  73. share/examples/tinker/alatet.int
  74. share/examples/tinker/alatet.key
  75. share/examples/tinker/alatet.seq
  76. share/examples/tinker/alatet.xyz
  77. share/examples/tinker/alkane.key
  78. share/examples/tinker/alkane.xyz
  79. share/examples/tinker/ammonia.key
  80. share/examples/tinker/ammonia.xyz
  81. share/examples/tinker/amoeba.key
  82. share/examples/tinker/amoeba.xyz
  83. share/examples/tinker/anthracene.key
  84. share/examples/tinker/anthracene.xyz
  85. share/examples/tinker/aspirin.key
  86. share/examples/tinker/aspirin.xyz
  87. share/examples/tinker/arach.int
  88. share/examples/tinker/arach.key
  89. share/examples/tinker/arach.xyz
  90. share/examples/tinker/azulene.int
  91. share/examples/tinker/azulene.key
  92. share/examples/tinker/azulene.xyz
  93. share/examples/tinker/bdna.int
  94. share/examples/tinker/bdna.key
  95. share/examples/tinker/bdna.make
  96. share/examples/tinker/bdna.pdb
  97. share/examples/tinker/bdna.seq
  98. share/examples/tinker/bdna.xyz
  99. share/examples/tinker/bearing.key
  100. share/examples/tinker/bearing.xyz
  101. share/examples/tinker/bearing2.key
  102. share/examples/tinker/benzamidine.key
  103. share/examples/tinker/benzamidine.xyz
  104. share/examples/tinker/benzbox.key
  105. share/examples/tinker/benzbox.xyz
  106. share/examples/tinker/benzene.int
  107. share/examples/tinker/benzene.key
  108. share/examples/tinker/benzene.xyz
  109. share/examples/tinker/book.key
  110. share/examples/tinker/book.xyz
  111. share/examples/tinker/bowl.int
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  116. share/examples/tinker/bowl3.key
  117. share/examples/tinker/bowl3.xyz
  118. share/examples/tinker/bucky.int
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  120. share/examples/tinker/bucky.xyz
  121. share/examples/tinker/butane.int
  122. share/examples/tinker/butane.key
  123. share/examples/tinker/butane.xyz
  124. share/examples/tinker/butane2.int
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  127. share/examples/tinker/butanes.dyn
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  129. share/examples/tinker/butanes.xyz
  130. share/examples/tinker/butanex.key
  131. share/examples/tinker/butanex.xyz
  132. share/examples/tinker/butopls.int
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  135. share/examples/tinker/butopls2.int
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  137. share/examples/tinker/butopls2.xyz
  138. share/examples/tinker/c5.int
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  142. share/examples/tinker/c7a.int
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  144. share/examples/tinker/c7a.seq
  145. share/examples/tinker/c7a.xyz
  146. share/examples/tinker/c7e.int
  147. share/examples/tinker/c7e.key
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  149. share/examples/tinker/c7e.xyz
  150. share/examples/tinker/cage.key
  151. share/examples/tinker/cage.xyz
  152. share/examples/tinker/calmodulin.key
  153. share/examples/tinker/calmodulin.pdb
  154. share/examples/tinker/calmodulin.seq
  155. share/examples/tinker/calmodulin.xyz
  156. share/examples/tinker/cawater.key
  157. share/examples/tinker/cawater.xyz
  158. share/examples/tinker/cln025.key
  159. share/examples/tinker/cln025.make
  160. share/examples/tinker/cln025.pdb
  161. share/examples/tinker/cln025.seq
  162. share/examples/tinker/cln025.xyz
  163. share/examples/tinker/copper.key
  164. share/examples/tinker/copper.xyz
  165. share/examples/tinker/cpentene.key
  166. share/examples/tinker/cpentene.xyz
  167. share/examples/tinker/crambin.dyn
  168. share/examples/tinker/crambin.key
  169. share/examples/tinker/crambin.pdb
  170. share/examples/tinker/crambin.seq
  171. share/examples/tinker/crambin.xyz
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  174. share/examples/tinker/crambin3.key
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  176. share/examples/tinker/crown.int
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  179. share/examples/tinker/cychept.int
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  182. share/examples/tinker/cyclo.int
  183. share/examples/tinker/cyclo.key
  184. share/examples/tinker/cyclo.xyz
  185. share/examples/tinker/cyclo2.int
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  187. share/examples/tinker/cyclo2.xyz
  188. share/examples/tinker/cycprop.key
  189. share/examples/tinker/cycprop.xyz
  190. share/examples/tinker/dang.key
  191. share/examples/tinker/dang.xyz
  192. share/examples/tinker/deltorphin.int
  193. share/examples/tinker/deltorphin.key
  194. share/examples/tinker/deltorphin.make
  195. share/examples/tinker/deltorphin.seq
  196. share/examples/tinker/deltorphin.xyz
  197. share/examples/tinker/dhfr.key
  198. share/examples/tinker/dhfr.pdb
  199. share/examples/tinker/dhfr.seq
  200. share/examples/tinker/dhfr.xyz
  201. share/examples/tinker/dhfr2.key
  202. share/examples/tinker/dhfr2.seq
  203. share/examples/tinker/dhfr2.xyz
  204. share/examples/tinker/diamond.key
  205. share/examples/tinker/diamond.xyz
  206. share/examples/tinker/diene.int
  207. share/examples/tinker/diene.key
  208. share/examples/tinker/diene.xyz
  209. share/examples/tinker/dimethane.key
  210. share/examples/tinker/dimethane.xyz
  211. share/examples/tinker/dmp.key
  212. share/examples/tinker/dmp.xyz
  213. share/examples/tinker/enkephalin.int
  214. share/examples/tinker/enkephalin.key
  215. share/examples/tinker/enkephalin.make
  216. share/examples/tinker/enkephalin.seq
  217. share/examples/tinker/enkephalin.xyz
  218. share/examples/tinker/ermer.int
  219. share/examples/tinker/ermer.key
  220. share/examples/tinker/ermer.xyz
  221. share/examples/tinker/ester.key
  222. share/examples/tinker/ester.xyz
  223. share/examples/tinker/ethane.int
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  225. share/examples/tinker/ethane.xyz
  226. share/examples/tinker/ethanol.int
  227. share/examples/tinker/ethanol.key
  228. share/examples/tinker/ethanol.xyz
  229. share/examples/tinker/ether.key
  230. share/examples/tinker/ether.xyz
  231. share/examples/tinker/etherbox.dyn
  232. share/examples/tinker/etherbox.key
  233. share/examples/tinker/etherbox.xyz
  234. share/examples/tinker/ethylene.int
  235. share/examples/tinker/ethylene.key
  236. share/examples/tinker/ethylene.xyz
  237. share/examples/tinker/flane.int
  238. share/examples/tinker/flane.key
  239. share/examples/tinker/flane.xyz
  240. share/examples/tinker/form.key
  241. share/examples/tinker/form.xyz
  242. share/examples/tinker/formbig.key
  243. share/examples/tinker/formbig.xyz
  244. share/examples/tinker/formbox.dyn
  245. share/examples/tinker/formbox.key
  246. share/examples/tinker/formbox.xyz
  247. share/examples/tinker/formopls.dyn
  248. share/examples/tinker/formopls.key
  249. share/examples/tinker/formopls.xyz
  250. share/examples/tinker/furan.int
  251. share/examples/tinker/furan.key
  252. share/examples/tinker/furan.xyz
  253. share/examples/tinker/glucose.key
  254. share/examples/tinker/glucose.xyz
  255. share/examples/tinker/glycerol.dyn
  256. share/examples/tinker/glycerol.key
  257. share/examples/tinker/glycerol.xyz
  258. share/examples/tinker/graphite.key
  259. share/examples/tinker/graphite.xyz
  260. share/examples/tinker/helix.dyn
  261. share/examples/tinker/helix.key
  262. share/examples/tinker/helix.xyz
  263. share/examples/tinker/heme.key
  264. share/examples/tinker/heme.xyz
  265. share/examples/tinker/hexane.int
  266. share/examples/tinker/hexane.key
  267. share/examples/tinker/hexane.xyz
  268. share/examples/tinker/hexanes.dyn
  269. share/examples/tinker/hexanes.key
  270. share/examples/tinker/hexanes.xyz
  271. share/examples/tinker/iamoeba.key
  272. share/examples/tinker/iamoeba.xyz
  273. share/examples/tinker/imidazole.int
  274. share/examples/tinker/imidazole.key
  275. share/examples/tinker/imidazole.xyz
  276. share/examples/tinker/imine.int
  277. share/examples/tinker/imine.key
  278. share/examples/tinker/imine.xyz
  279. share/examples/tinker/indole.key
  280. share/examples/tinker/indole.xyz
  281. share/examples/tinker/lactam.key
  282. share/examples/tinker/lactam.xyz
  283. share/examples/tinker/lipid.key
  284. share/examples/tinker/lipid.xyz
  285. share/examples/tinker/lj38.key
  286. share/examples/tinker/lj38.xyz
  287. share/examples/tinker/melittin.key
  288. share/examples/tinker/melittin.pdb
  289. share/examples/tinker/melittin.seq
  290. share/examples/tinker/melittin.xyz
  291. share/examples/tinker/membrane.key
  292. share/examples/tinker/membrane.xyz
  293. share/examples/tinker/meohbox.key
  294. share/examples/tinker/meohbox.xyz
  295. share/examples/tinker/methane.int
  296. share/examples/tinker/methane.key
  297. share/examples/tinker/methane.xyz
  298. share/examples/tinker/methanol.key
  299. share/examples/tinker/methanol.xyz
  300. share/examples/tinker/mgwater.key
  301. share/examples/tinker/mgwater.xyz
  302. share/examples/tinker/mm3.key
  303. share/examples/tinker/mm3.xyz
  304. share/examples/tinker/nacl.key
  305. share/examples/tinker/nacl.xyz
  306. share/examples/tinker/nada.key
  307. share/examples/tinker/nada.xyz
  308. share/examples/tinker/naphthalene.int
  309. share/examples/tinker/naphthalene.key
  310. share/examples/tinker/naphthalene.xyz
  311. share/examples/tinker/naphthax.frac
  312. share/examples/tinker/naphthax.key
  313. share/examples/tinker/naphthax.xyz
  314. share/examples/tinker/nitrile.key
  315. share/examples/tinker/nitrile.xyz
  316. share/examples/tinker/nitrogen.dyn
  317. share/examples/tinker/nitrogen.key
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  319. share/examples/tinker/nma.int
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  322. share/examples/tinker/nmabox.dyn
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  324. share/examples/tinker/nmabox.xyz
  325. share/examples/tinker/nmf.key
  326. share/examples/tinker/nmf.xyz
  327. share/examples/tinker/nstilbene.int
  328. share/examples/tinker/nstilbene.key
  329. share/examples/tinker/nstilbene.xyz
  330. share/examples/tinker/octane.int
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  332. share/examples/tinker/octane.xyz
  333. share/examples/tinker/octane2.int
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  336. share/examples/tinker/octene.dyn
  337. share/examples/tinker/octene.key
  338. share/examples/tinker/octene.xyz
  339. share/examples/tinker/palmitate.int
  340. share/examples/tinker/palmitate.key
  341. share/examples/tinker/palmitate.xyz
  342. share/examples/tinker/pentane.frac
  343. share/examples/tinker/pentane.key
  344. share/examples/tinker/pentane.xyz
  345. share/examples/tinker/peptide.int
  346. share/examples/tinker/peptide.key
  347. share/examples/tinker/peptide.make
  348. share/examples/tinker/peptide.pdb
  349. share/examples/tinker/peptide.seq
  350. share/examples/tinker/peptide.xyz
  351. share/examples/tinker/phenanth.key
  352. share/examples/tinker/phenanth.xyz
  353. share/examples/tinker/photo.key
  354. share/examples/tinker/photo.pdb
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  357. share/examples/tinker/pol3.key
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  359. share/examples/tinker/polyala.key
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  365. share/examples/tinker/propellane.int
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  370. share/examples/tinker/pyridine.int
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  410. share/examples/tinker/tip4pbox.key
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  412. share/examples/tinker/tip5p.key
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  418. share/examples/tinker/ubiquitin.key
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  454. share/examples/tinker/white.int
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  457. share/tinker/bench/0README
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  492. share/tinker/bench/results-2.3
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  499. share/tinker/bench/results-3.7
  500. share/tinker/bench/results-3.8
  501. share/tinker/bench/results-3.9
  502. share/tinker/bench/results-4.0
  503. share/tinker/bench/results-4.1
  504. share/tinker/bench/results-4.2
  505. share/tinker/bench/results-4.3
  506. share/tinker/bench/results-5.0
  507. share/tinker/bench/results-5.1
  508. share/tinker/bench/results-6.0
  509. share/tinker/bench/results-6.2
  510. share/tinker/bench/results-6.3
  511. share/tinker/bench/results-7.0
  512. share/tinker/params/0README
  513. share/tinker/params/amber94.prm
  514. share/tinker/params/amber96.prm
  515. share/tinker/params/amber98.prm
  516. share/tinker/params/amber99.prm
  517. share/tinker/params/amber99sb.prm
  518. share/tinker/params/amoeba04.prm
  519. share/tinker/params/amoeba09.prm
  520. share/tinker/params/amoebabio09.prm
  521. share/tinker/params/amoebapro04.prm
  522. share/tinker/params/amoebapro13.prm
  523. share/tinker/params/charmm19.prm
  524. share/tinker/params/charmm22.prm
  525. share/tinker/params/charmm22cmap.prm
  526. share/tinker/params/dang.prm
  527. share/tinker/params/hoch.prm
  528. share/tinker/params/iwater.prm
  529. share/tinker/params/mm2.prm
  530. share/tinker/params/mm3.prm
  531. share/tinker/params/mm3pro.prm
  532. share/tinker/params/mmff.prm
  533. share/tinker/params/oplsaa.prm
  534. share/tinker/params/oplsaal.prm
  535. share/tinker/params/oplsua.prm
  536. share/tinker/params/smoothaa.prm
  537. share/tinker/params/smoothua.prm
  538. share/tinker/params/tiny.prm
  539. share/tinker/params/water03.prm
  540. share/tinker/params/water14.prm
  541. share/tinker/test/0README
  542. share/tinker/test/anion.dat
  543. share/tinker/test/anion.dyn0
  544. share/tinker/test/anion.key
  545. share/tinker/test/anion.log
  546. share/tinker/test/anion.run
  547. share/tinker/test/anion.xyz
  548. share/tinker/test/argon.1st
  549. share/tinker/test/argon.key
  550. share/tinker/test/argon.log
  551. share/tinker/test/argon.run
  552. share/tinker/test/cluster.dat
  553. share/tinker/test/cluster.key
  554. share/tinker/test/cluster.log
  555. share/tinker/test/cluster.run
  556. share/tinker/test/cluster.xyz
  557. share/tinker/test/crambin.key
  558. share/tinker/test/crambin.log
  559. share/tinker/test/crambin.pdb
  560. share/tinker/test/crambin.run
  561. share/tinker/test/cyclohex.boat
  562. share/tinker/test/cyclohex.chair
  563. share/tinker/test/cyclohex.key
  564. share/tinker/test/cyclohex.log
  565. share/tinker/test/cyclohex.run
  566. share/tinker/test/dhfr.dyn
  567. share/tinker/test/dhfr.key
  568. share/tinker/test/dhfr.log
  569. share/tinker/test/dhfr.run
  570. share/tinker/test/dhfr.xyz
  571. share/tinker/test/dialanine.key
  572. share/tinker/test/dialanine.log
  573. share/tinker/test/dialanine.run
  574. share/tinker/test/dialanine.xyz
  575. share/tinker/test/enkephalin.dat
  576. share/tinker/test/enkephalin.key
  577. share/tinker/test/enkephalin.log
  578. share/tinker/test/enkephalin.run
  579. share/tinker/test/ethanol.000
  580. share/tinker/test/ethanol.020
  581. share/tinker/test/ethanol.040
  582. share/tinker/test/ethanol.060
  583. share/tinker/test/ethanol.080
  584. share/tinker/test/ethanol.100
  585. share/tinker/test/ethanol.120
  586. share/tinker/test/ethanol.140
  587. share/tinker/test/ethanol.160
  588. share/tinker/test/ethanol.180
  589. share/tinker/test/ethanol.dat
  590. share/tinker/test/ethanol.key
  591. share/tinker/test/ethanol.log
  592. share/tinker/test/ethanol.run
  593. share/tinker/test/ethanol.xyz
  594. share/tinker/test/formamide.cell
  595. share/tinker/test/formamide.dat
  596. share/tinker/test/formamide.key
  597. share/tinker/test/formamide.log
  598. share/tinker/test/formamide.run
  599. share/tinker/test/gpcr.blk
  600. share/tinker/test/gpcr.key
  601. share/tinker/test/gpcr.log
  602. share/tinker/test/gpcr.run
  603. share/tinker/test/gpcr.xyz
  604. share/tinker/test/helix.1st
  605. share/tinker/test/helix.key
  606. share/tinker/test/helix.log
  607. share/tinker/test/helix.run
  608. share/tinker/test/ice.key
  609. share/tinker/test/ice.log
  610. share/tinker/test/ice.run
  611. share/tinker/test/ice.xyz
  612. share/tinker/test/ifabp.dat
  613. share/tinker/test/ifabp.key
  614. share/tinker/test/ifabp.log
  615. share/tinker/test/ifabp.run
  616. share/tinker/test/ifabp.xyz
  617. share/tinker/test/nitrogen.arc
  618. share/tinker/test/nitrogen.key
  619. share/tinker/test/nitrogen.log
  620. share/tinker/test/nitrogen.run
  621. share/tinker/test/nitrogen.xyz
  622. share/tinker/test/salt.cell
  623. share/tinker/test/salt.key
  624. share/tinker/test/salt.log
  625. share/tinker/test/salt.run
  626. share/tinker/test/tetraala.dat
  627. share/tinker/test/tetraala.key
  628. share/tinker/test/tetraala.log
  629. share/tinker/test/tetraala.run
  630. share/tinker/test/water.key
  631. share/tinker/test/water.log
  632. share/tinker/test/water.pot
  633. share/tinker/test/water.run
  634. share/tinker/test/water.xyz
  635. Collapse this list.

To install the port: cd /usr/ports/biology/tinker/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

PKGNAME: there is no package for this port: _LICENSE_RESTRICTED = delete-package delete-distfiles

distinfo:

SHA256 (tinker-7.1.3.tar.gz) = c221459ac1ac423ed8c99c7ba67eaab09821c970333cd2841efb20ccbfd59095
SIZE (tinker-7.1.3.tar.gz) = 28655947


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gfortran6 : lang/gcc6
  2. as : devel/binutils
Runtime dependencies:
  1. gfortran6 : lang/gcc6
There are no ports dependent upon this port

Configuration Options
===> The following configuration options are available for tinker-7.1.3_3:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
     OPTIMIZED_FFLAGS=off: compilation optimizations
===> Use 'make config' to modify these settings

USES:
fortran

Master Sites:
  1. http://dasher.wustl.edu/tinker/downloads/

Number of commits found: 69

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
09 Nov 2017 20:45:04
Original commit files touched by this commit  7.1.3_3
Revision:453869
antoine search for other commits by this committer
Fix the context of some patches so that they apply with stricter patch(1)

PR:		223545
With hat:	portmgr
10 Sep 2017 20:55:39
Original commit files touched by this commit  7.1.3_3
Revision:449591
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
01 Apr 2017 15:23:32
Original commit files touched by this commit  7.1.3_2
Revision:437439
gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
07 Dec 2016 13:24:57
Original commit files touched by this commit  7.1.3_1
Revision:428057
gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
02 Nov 2016 22:45:14
Original commit files touched by this commit  7.1.3
Revision:425174
mat search for other commits by this committer
Cleanup no longer needed CHMOD usage after r424898.

PR:		213743
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
21 Oct 2016 12:51:41
Original commit files touched by this commit  7.1.3
Revision:424411  Sanity Test Failure
mat search for other commits by this committer
${RM} already has -f.

PR:		213570
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
19 Aug 2015 13:30:00
Original commit files touched by this commit  7.1.3
Revision:394778  Sanity Test Failure
mat search for other commits by this committer
Convert ports to use the options helpers in categories [abc]*, and minor fixes.

Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3412?
22 May 2015 13:34:22
Original commit files touched by this commit  7.1.3
Revision:387021
mat search for other commits by this committer
Remove $FreeBSD$ from patches files in categories a-j.

With hat:	portmgr
Sponsored by:	Absolight
18 May 2015 01:27:47
Original commit files touched by this commit  7.1.3
Revision:386651
wen search for other commits by this committer
- Update to 7.1.3
11 Mar 2015 13:44:21
Original commit files touched by this commit  7.1.2
Revision:380981
mi search for other commits by this committer
Update from 7.1.1 to 7.1.2.
08 Mar 2015 18:34:42
Original commit files touched by this commit  7.1.1
Revision:380785
mi search for other commits by this committer
Unbreak by updating from 7.0.1 to 7.1.1. Hopefully, the authors will
stop rerolling releases (and breaking downstream checksums) now.

While here, allow parallel builds (seems to work again now) and stop
extraction of unused subdirectories.
31 Jan 2015 09:49:23
Original commit files touched by this commit  7.0.1
Revision:378195
antoine search for other commits by this committer
Mark BROKEN: Checksum and size mismatch

Reported by:	pkg-fallout
04 Jan 2015 15:21:13
Original commit files touched by this commit  7.0.1
Revision:376238
pi search for other commits by this committer
biology/tinker: 6.2.6 -> 7.0.1

PR:		196376
Submitted by:	Nikola Kolev <koue@chaosophia.net>
20 Oct 2014 07:10:48
Original commit files touched by this commit  6.2.6_6
Revision:371237
bapt search for other commits by this committer
Cleanup plist
10 Sep 2014 20:50:37
Original commit files touched by this commit  6.2.6_6
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
22 Apr 2014 19:28:18
Original commit files touched by this commit  6.2.6_5
Revision:351875
riggs search for other commits by this committer
- Un-break fetch stage: the name scheme of the source tarballs has changed
- Add LICENSE*
- Remove conflict with hunspell:
  - Rename the 'analyze' binary to 'analyze_t'
  - put a note in pkg-message.in
- Pet portlint

PR:		ports/187569
Submitted by:	Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
Approved by:	thierry (mentor)
MFH:	2014Q2
10 Mar 2014 20:55:22
Original commit files touched by this commit  6.2.06_4
Revision:347809
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
18 Dec 2013 18:27:05
Original commit files touched by this commit  6.2.06_3
Revision:336854
tijl search for other commits by this committer
- biology/tinker: USES=fortran, staging.
- Add CONFLICTS_INSTALL between hunspell and tinker.
  Both install bin/analyze.
26 Oct 2013 00:52:36
Original commit files touched by this commit  6.2.06_2
Revision:331644
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Sep 2013 15:55:44
Original commit files touched by this commit  6.2.06_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
18 Aug 2013 11:38:35
Original commit files touched by this commit  6.2.06_1
Revision:324901
marino search for other commits by this committer
biology/tinker: Regenerate distinfo to unbreak fetch

Apparently the distfile was rerolled.  The sizes of the file are only a few
bytes apart.  Since the master site never changed, it's reasonable just to
regenerate the distinfo and bump the PORTREVISION.

PR:		180664
Approved by:	bapt/culot (mentors, implicit)
14 Aug 2013 22:35:54
Original commit files touched by this commit  6.2.06
Revision:324744  Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
15 Jul 2013 14:50:22
Original commit files touched by this commit  6.2.06
Revision:323046
miwi search for other commits by this committer
- Update to 6.2.06

PR:		180518
Submitted by:	Ports Fury
29 May 2013 05:25:49
Original commit files touched by this commit  6.2.05
Revision:319343
miwi search for other commits by this committer
- Update to 6.2.05

PR:		179061
Submitted by:	Ports Fury
21 May 2013 08:19:03
Original commit files touched by this commit  6.2.04
Revision:318658
miwi search for other commits by this committer
- Update to 6.2.04

PR:		178590
Submitted by:	Ports Fury
29 Apr 2013 14:23:03
Original commit files touched by this commit  6.2.02
Revision:316821
miwi search for other commits by this committer
- Update to 6.2.02

PR:		178031
Submitted by:	Ports Fury
24 Mar 2013 16:13:57
Original commit files touched by this commit  6.2.01
Revision:315140
miwi search for other commits by this committer
- Update to 6.2.01

PR:		177261
Submitted by:	ports fury
01 Dec 2012 00:00:43
Original commit files touched by this commit  6.1.01
Revision:308054
sperber search for other commits by this committer
- Update to version 6.1.01
- Add MAKE_JOBS_SAFE
- Convert to optionsng
- Trim Makefile header

PR:           ports/171971
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
10 Oct 2011 20:17:22
Original commit files touched by this commit  5.1.09
pav search for other commits by this committer
- ${FFLAGS} might contain commas

Reported by:    pointyhat
31 Jan 2011 11:45:44
Original commit files touched by this commit  5.1.09
miwi search for other commits by this committer
- Update to 5.1.09

PR:             154359
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Feature safe:   yes
30 Oct 2010 23:51:30
Original commit files touched by this commit  4.2.20040908_5
rene search for other commits by this committer
- Unbreak by removing some old and adding some new master sites
- Bump PORTREVISION
PR:             ports/151733
Submitted by:   Chris Petrik [c.petrik.sosa gmail.com]
30 Sep 2010 08:53:18
Original commit files touched by this commit  4.2.20040908_4
erwin search for other commits by this committer
Mark BROKEN: does not fetch.
13 Sep 2009 00:08:01
Original commit files touched by this commit  4.2.20040908_4
gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
07 Jan 2009 16:34:27
Original commit files touched by this commit  4.2.20040908_3
gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
19 Apr 2008 17:56:05
Original commit files touched by this commit  4.2.20040908_2
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
12 Jul 2007 06:49:37
Original commit files touched by this commit  4.2.20040908_1
maho search for other commits by this committer
Now we use USE_FORTRAN=yes to use FORTRAN compiler.
25 May 2007 01:41:55
Original commit files touched by this commit  4.2.20040908_1
edwin search for other commits by this committer
swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from
dasher.wustl.edu
25 May 2007 01:00:15
Original commit files touched by this commit  4.2.20040908_1
kris search for other commits by this committer
BROKEN: Unfetchable
21 Apr 2007 15:26:54
Original commit files touched by this commit  4.2.20040908_1
miwi search for other commits by this committer
- Unbreak
- Add backup MASTER_SITES

PR:             111963
Submitted by:   Jason Harris <jharris@widomaker.com>
20 Apr 2007 08:03:13
Original commit files touched by this commit  4.2.20040908_1
kris search for other commits by this committer
BROKEN: Unfetchable
16 Mar 2007 21:16:36
Original commit files touched by this commit  4.2.20040908_1
gabor search for other commits by this committer
- MASTER_SITE is back, remove BROKEN

PR:             ports/109954
Submitted by:   Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
27 Feb 2007 04:55:59
Original commit files touched by this commit  4.2.20040908_1
kris search for other commits by this committer
BROKEN: Unfetchable
12 Jan 2007 12:21:21
Original commit files touched by this commit  4.2.20040908_1
maho search for other commits by this committer
* Migrate to gfortran.
* Bump port revision.
03 May 2006 23:26:35
Original commit files touched by this commit  4.2.20040908
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
24 Nov 2005 00:04:00
Original commit files touched by this commit  4.2.20040908
pav search for other commits by this committer
- Add SHA256
25 Sep 2004 08:06:08
Original commit files touched by this commit  4.2.20040908
thierry search for other commits by this committer
Upgrade to latest revision to make fetchable again.

Approved by:    portmgr (marcus)
19 Aug 2004 22:24:21
Original commit files touched by this commit  4.2.20040819
thierry search for other commits by this committer
- Unbreak by upgrading to 4.2;

- Use DIST_SUBDIR because tarball is not versioned;

- Add sysdate to PORTVERSION to handle minor revisions;

- Do some cleaning.
23 Jul 2004 20:31:09
Original commit files touched by this commit  4.1
anholt search for other commits by this committer
Use X_IMAKE_PORT instead of dist-specific imake dependencies.  While here,
make the BROKEN message a little more informative.
03 Jul 2004 09:53:15
Original commit files touched by this commit  4.1
kris search for other commits by this committer
BROKEN: Checksum mismatch
10 Apr 2004 17:26:55
Original commit files touched by this commit  4.1
trevor search for other commits by this committer
Tidy up whitespace.
21 Nov 2003 22:28:34
Original commit files touched by this commit  4.1
pav search for other commits by this committer
- Update checksum again, seems author removes .ps version of documentation
  from tarball
- Unmark broken, it builds for me just fine

Approved by:    adamw (mentor)
22 Oct 2003 09:29:55
Original commit files touched by this commit  4.1
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
16 Oct 2003 00:58:05
Original commit files touched by this commit  4.1
linimon search for other commits by this committer
Forced commit to add rationale.  (Note: this port was previously
broken due to a bad checksum; the initial intent of the update
was to try to fix only that.  However, the new revision fails
as well, but this led to my being sloppy with the checkin.
As Maxwell Smart said, "Sorry about that, Chief.")

New distfile 9/13.  "Changes from TINKER 4.0 include some new force
field parameter sets, improvements to rigid body dynamics, a
Nose-Hoover thermostat, and numerous minor additions and bug fixes."

However, the compilation fails in sockets.c with an undefined
ref to <jni.h>.  This is part of: "an interface between TINKER Fortran
code and FFE Java objects used for socket based communication."

Some interested party is going to have to take up this one, I'm
afraid, as I have no idea what is involved.

Reminded by: kris
15 Oct 2003 23:56:43
Original commit files touched by this commit  4.1
linimon search for other commits by this committer
Fixes the checksum problem, but doesn't fix the port; adds a BROKEN
line about how it fails.  Some other interested person will have
to take it from here.

PR:             56882
25 Jul 2003 22:30:56
Original commit files touched by this commit  4.0
maho search for other commits by this committer
Some clean-up.
a) ECHO-> ECHO_CMD
b) place of WITH_OPTIMIZED_FLAGS seems to be wrong.
c) fix errors reported from freshports.org
25 Jul 2003 21:19:09
Original commit files touched by this commit  4.0
maho search for other commits by this committer
Duplicated the `pre-extract:' and `post-build:'

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  myself
25 Jul 2003 07:19:40
Original commit files touched by this commit  4.0
maho search for other commits by this committer
a) Some corrupts with Makefile and pkg-plist.
b) forgot to notice that drop maintainership to ports@

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  myself
25 Jul 2003 02:48:05
Original commit files touched by this commit  4.0
maho search for other commits by this committer
a) Forgot to update distinfo 52498
b) added LEGAL. author requests no distribution
   except from his FTP site
c) clean-ups for compiler optimization

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  maho; partially :)
19 Jul 2003 03:48:44
Original commit files touched by this commit  4.0
maho search for other commits by this committer
Maintainer update of biology/tinker port to version 4.0.

PR:             52498
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
30 Mar 2003 06:43:14
Original commit files touched by this commit  3.9_1
edwin search for other commits by this committer
Update the biology/tinker Makefile so it builds on -current

PR:             ports/50371
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
21 Feb 2003 11:01:38
Original commit files touched by this commit  3.9_1
knu search for other commits by this committer
De-pkg-comment.
19 Jan 2002 15:15:17
Original commit files touched by this commit
ijliao search for other commits by this committer
Upgrade tinker to the latest revision    
13 Sep 2001 04:50:40
Original commit files touched by this commit
lioux search for other commits by this committer
style fix: un"echo" commands    
13 Sep 2001 02:13:52
Original commit files touched by this commit
lioux search for other commits by this committer
Update to 3.9    
08 Jul 2001 19:15:34
Original commit files touched by this commit
ijliao search for other commits by this committer
Add NOPORTDOCS support to pkg-plist    
20 Apr 2001 15:01:37
Original commit files touched by this commit
olgeni search for other commits by this committer
Update distfile checksum (PORTREVISION bumped)    
24 Jan 2001 17:58:44
Original commit files touched by this commit
ijliao search for other commits by this committer
update from 3.7 to 3.8    
08 Oct 2000 00:23:30
Original commit files touched by this commit
asami search for other commits by this committer
Convert category biology to new layout.  
09 Jun 2000 05:59:14
Original commit files touched by this commit
will search for other commits by this committer
Clean up this port so that it installs stuff in a more proper location   as per
hier(7) and Porter's Handbook.    

Number of commits found: 69

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