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Port details
trimadap Trim adapter sequences from Illumina data using heuristic rules
0.1.3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.3Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-03 18:24:21
Last Update: 2021-10-25 12:58:29
Commit Hash: 61b6613
License: GPLv2
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/trimadap-mt
  2. /usr/local/share/licenses/trimadap-0.1.3/catalog.mk
  3. /usr/local/share/licenses/trimadap-0.1.3/LICENSE
  4. /usr/local/share/licenses/trimadap-0.1.3/GPLv2
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Dependency lines:
  • trimadap>0:biology/trimadap
To install the port:
cd /usr/ports/biology/trimadap/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/trimadap
  • pkg install trimadap
PKGNAME: trimadap
Flavors: there is no flavor information for this port.
ONLY_FOR_ARCHS: amd64 i386 powerpc64le
distinfo:
Packages (timestamps in pop-ups are UTC):
trimadap
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd640.1.30.1.3
FreeBSD:11:armv6--
FreeBSD:11:i3860.1.30.1.3
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64--
FreeBSD:12:amd640.1.30.1.3
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3860.1.30.1.3
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd640.1.30.1.3
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3860.1.30.1.3
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd640.1.3-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3860.1.3-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

This port is required by:
for Run
  1. biology/ddocent

Configuration Options:
Options name:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/lh3/trimadap/tar.gz/0.1-3-gddfef21?dummy=/
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Number of commits found: 7

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
25 Oct 2021 12:58:29
 files touched by this commit commit hash:61b661339366b6ee95ca1de0667979da9240c6b8  0.1.3
Alexey Dokuchaev (danfe) search for other commits by this committer
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)

ONLY_FOR_ARCHS_REASON is used as part of the sentence and thus should
start with lower-case letter and not end with a period which is added
by the framework, similar to other knobs like BROKEN, IGNORE, et al.

While here, remove needless quoting, add missing Oxford comma, expand
contractions and jargonisms, use correct spelling for proper names.
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  0.1.3
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  0.1.3
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
06 Apr 2021 09:53:56
 files touched by this commit commit hash:5b92ed01d91a2fa9932769a56436c597770ae839  0.1.3
Piotr Kubaj (pkubaj) search for other commits by this committer
biology/trimadap: fix build on powerpc64le

Requires GCC for its SSE translation.
11 May 2019 00:18:24
Original commit files touched by this commit Revision:501207  0.1.3
jwb search for other commits by this committer
biology/trimadap: Mark only for amd64 and i386

Contains hard-coded SSE instructions
21 Jun 2018 23:52:37
Original commit files touched by this commit Revision:473009  0.1.3
linimon search for other commits by this committer
Mark as broken on aarch64, and, where appropriate, armvX.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
03 Apr 2018 18:23:54
Original commit files touched by this commit Revision:466367  0.1.3
jwb search for other commits by this committer
biology/trimadap: Trim adapter sequences from Illumina data

Reviewed by:    mat
Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D14935

Number of commits found: 7